Wall clock time and date at job start Sun Mar 29 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47548 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 21 21 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 22 22 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 23 23 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 24 24 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 27 27 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 28 28 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 29 29 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 30 30 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 31 31 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 32 32 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 33 33 H 1.07999 * 126.64240 * 179.78042 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 8.4965 -0.8291 0.0081 11 6 9.7607 -1.6908 0.0136 12 6 10.9760 -0.7996 0.0190 13 1 10.8584 0.2739 0.0189 14 6 12.2380 -1.3548 0.0241 15 7 12.3814 -2.6621 0.0237 16 14 13.7444 -0.2502 0.0314 17 1 14.1375 0.0414 1.4334 18 1 14.8637 -0.9346 -0.6642 19 1 13.4296 1.0209 -0.6689 20 6 2.3408 -1.1291 -0.0066 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3634 0.8897 0.5142 24 1 1.9769 2.1146 0.0004 25 1 6.1245 0.0584 -0.0014 26 1 7.2697 -2.3638 0.8916 27 1 7.2775 -2.3625 -0.8884 28 1 8.4895 -0.1993 -0.8815 29 1 8.4818 -0.2006 0.8985 30 1 9.7675 -2.3204 0.9034 31 1 9.7758 -2.3197 -0.8766 32 1 13.2692 -3.0528 0.0268 33 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718485720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:24 Heat of formation + Delta-G solvation = -67.475706 kcal Electronic energy + Delta-G solvation = -15655.122846 eV Core-core repulsion = 12873.879917 eV Total energy + Delta-G solvation = -2781.242929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.71102 -40.60187 -37.09691 -35.40754 -35.03047 -33.16824 -31.55509 -28.93598 -27.93127 -25.54714 -23.71631 -22.40497 -22.11996 -20.79013 -18.99411 -18.48564 -17.49659 -17.34316 -16.90837 -16.54942 -16.43690 -15.28725 -15.21783 -14.44245 -14.27118 -14.09338 -13.94175 -13.77693 -13.56312 -13.51338 -12.76280 -12.58544 -12.55692 -12.40029 -11.79162 -11.71066 -11.35644 -11.15919 -10.75463 -10.55857 -10.30915 -9.55660 -8.20039 -6.31579 -0.01122 1.33065 1.41652 1.43042 1.54026 1.63573 2.03980 2.18752 2.42408 3.13802 3.64959 3.81719 4.03554 4.11072 4.17044 4.34481 4.51234 4.65409 4.88182 4.89789 4.90459 4.92592 5.04158 5.09327 5.14099 5.27560 5.50158 5.51825 5.69156 5.82542 5.83264 6.21458 6.39792 6.85648 6.94563 7.38039 8.92152 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065409 B = 0.003554 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.974000 B = 7876.984241 C = 8273.894400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.008 3.992 4 O -0.168 6.168 5 C -0.103 4.103 6 C 0.595 3.405 7 O -0.566 6.566 8 N -0.704 5.704 9 C 0.127 3.873 10 C -0.103 4.103 11 C 0.024 3.976 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.123 4.123 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.255 0.745 25 H 0.417 0.583 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.068 0.932 30 H -0.006 1.006 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.982 10.575 -0.048 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.062 4.062 4 O -0.063 6.063 5 C -0.154 4.154 6 C 0.383 3.617 7 O -0.448 6.448 8 N -0.354 5.354 9 C 0.004 3.996 10 C -0.140 4.140 11 C -0.014 4.014 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.144 4.144 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.107 0.893 24 H 0.271 0.729 25 H 0.253 0.747 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.607 9.765 -0.054 24.626 hybrid contribution 1.038 0.135 0.009 1.047 sum -21.569 9.901 -0.045 23.733 Atomic orbital electron populations 1.20261 0.86332 1.03952 1.03205 1.20868 0.99288 0.91530 1.09166 1.25178 0.78608 1.01793 1.00576 1.84058 1.30961 1.20598 1.70711 1.21679 0.95478 0.81394 1.16878 1.16896 0.82132 0.86261 0.76455 1.90848 1.86739 1.14102 1.53078 1.45918 1.04896 1.11513 1.73074 1.21392 0.82921 0.93837 1.01440 1.21614 0.92254 0.97959 1.02216 1.18941 0.92293 0.94878 0.95265 1.21681 0.91943 0.93845 1.50543 0.91580 1.26022 1.02847 0.96468 0.94746 1.70106 1.23889 1.11888 1.51650 0.85407 0.78084 0.78838 0.78472 1.19803 1.20990 1.18447 1.22106 0.90747 1.01520 1.00038 0.90427 0.91334 0.89260 0.72920 0.74657 0.92402 0.92389 0.91343 0.91338 0.98745 0.98737 0.92770 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 71.24 0.74 -0.03 16 2 C -0.21 -3.38 6.14 -20.06 -0.12 -3.50 16 3 C 0.01 0.11 12.00 67.10 0.81 0.91 16 4 O -0.17 -3.58 10.40 -4.97 -0.05 -3.63 16 5 C -0.10 -2.73 7.13 24.07 0.17 -2.56 16 6 C 0.59 19.56 7.79 86.44 0.67 20.24 16 7 O -0.57 -22.68 16.86 -4.33 -0.07 -22.76 16 8 N -0.70 -21.58 5.55 -467.09 -2.59 -24.18 16 9 C 0.13 4.63 5.67 86.38 0.49 5.12 16 10 C -0.10 -4.03 5.27 30.59 0.16 -3.86 16 11 C 0.02 1.25 4.97 29.85 0.15 1.40 16 12 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 16 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C -0.12 -2.87 10.57 22.39 0.24 -2.64 16 21 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.26 0.89 8.06 -2.91 -0.02 0.87 16 25 H 0.42 10.51 8.23 -92.71 -0.76 9.75 16 26 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -71.68 295.13 3.93 -67.74 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.34 Total: 8.73 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.00 Total: -14.85 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.31 Total: -81.23 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.12 Total: -26.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.68 3.93 -67.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718485720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.268 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds