Wall clock time and date at job start Sun Mar 29 2020 21:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 12 12 C 1.53004 * 109.47278 * 300.00073 * 11 10 9 13 13 C 1.52999 * 109.47194 * 300.00130 * 12 11 10 14 14 C 1.52998 * 109.47153 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.47534 * 299.99892 * 14 13 12 16 16 F 1.39903 * 109.47162 * 60.00388 * 14 13 12 17 17 F 1.39908 * 109.46861 * 179.97438 * 14 13 12 18 18 C 1.53006 * 109.47148 * 59.99641 * 13 12 11 19 19 C 1.52998 * 109.47063 * 300.00349 * 18 13 12 20 20 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 23 23 H 1.08997 * 109.47293 * 60.00168 * 11 10 9 24 24 H 1.09003 * 109.47189 * 180.02562 * 11 10 9 25 25 H 1.09000 * 109.47238 * 179.97438 * 12 11 10 26 26 H 1.09003 * 109.46809 * 60.00014 * 12 11 10 27 27 H 1.09003 * 109.47147 * 299.99677 * 13 12 11 28 28 H 1.08997 * 109.47326 * 180.02562 * 18 13 12 29 29 H 1.09003 * 109.47067 * 59.99987 * 18 13 12 30 30 H 1.09003 * 109.46883 * 299.99751 * 19 18 13 31 31 H 1.08997 * 109.47445 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 2.4223 -4.0429 -1.4277 12 6 1.1443 -4.1962 -2.2548 13 6 0.2668 -5.2884 -1.6400 14 6 -1.0114 -5.4412 -2.4668 15 9 -1.7107 -4.2296 -2.4727 16 9 -0.6787 -5.7941 -3.7790 17 9 -1.8135 -6.4404 -1.9049 18 6 -0.0976 -4.9023 -0.2050 19 6 1.1804 -4.7490 0.6220 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.9685 -3.5476 0.5965 23 1 3.0474 -3.2648 -1.8657 24 1 2.9669 -4.9871 -1.4227 25 1 1.4039 -4.4708 -3.2772 26 1 0.5994 -3.2522 -2.2598 27 1 0.8118 -6.2324 -1.6351 28 1 -0.7223 -5.6806 0.2332 29 1 -0.6425 -3.9583 -0.2100 30 1 1.7254 -5.6930 0.6270 31 1 0.9209 -4.4735 1.6442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725622634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:47 Heat of formation + Delta-G solvation = -166.502400 kcal Electronic energy + Delta-G solvation = -17955.312361 eV Core-core repulsion = 14627.918572 eV Total energy + Delta-G solvation = -3327.393789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83970 -47.36380 -47.25438 -38.47620 -33.86820 -31.52182 -30.39676 -28.75056 -25.14313 -23.49145 -22.31547 -21.31466 -18.89958 -17.98834 -17.82994 -17.22825 -17.20540 -15.03610 -14.51950 -14.34577 -14.10234 -13.90697 -13.72300 -13.57742 -13.44649 -13.44378 -13.06361 -12.81963 -12.16748 -11.87920 -11.77434 -11.33273 -10.90812 -10.83933 -10.71664 -10.38363 -10.12443 -10.00141 -9.63615 -9.54430 -8.87461 -6.94638 -5.75536 -3.04108 3.04893 3.43758 3.49097 3.50692 4.07316 4.28332 4.34206 4.60318 5.06173 5.09731 5.35614 5.55027 5.59108 5.66549 5.70712 5.85095 5.91045 5.96143 6.19720 6.28441 6.36202 6.59453 6.67072 6.77561 6.92210 7.00836 7.71212 8.43292 9.54460 10.12458 10.46894 11.46949 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.034178 B = 0.007439 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.052700 B = 3762.800897 C = 4007.534305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.170 3.830 11 C -0.129 4.129 12 C -0.111 4.111 13 C -0.124 4.124 14 C 0.450 3.550 15 F -0.176 7.176 16 F -0.190 7.190 17 F -0.191 7.191 18 C -0.116 4.116 19 C -0.118 4.118 20 H 0.255 0.745 21 H 0.384 0.616 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -12.614 -3.031 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.060 3.940 11 C -0.169 4.169 12 C -0.149 4.149 13 C -0.144 4.144 14 C 0.396 3.604 15 F -0.157 7.157 16 F -0.172 7.172 17 F -0.173 7.173 18 C -0.154 4.154 19 C -0.156 4.156 20 H 0.065 0.935 21 H 0.219 0.781 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.483 -12.465 -3.027 12.836 hybrid contribution -0.135 0.894 -0.293 0.950 sum 0.348 -11.571 -3.320 12.043 Atomic orbital electron populations 1.69657 1.05045 1.25622 1.57667 1.24727 0.95480 0.97608 1.03109 0.86227 0.78639 0.84073 0.77457 1.21825 1.21861 1.20845 1.19240 0.90972 0.84183 1.42619 0.91235 1.42499 1.05786 0.99598 1.88483 1.20257 0.94435 0.86557 0.92756 1.22113 0.95766 0.99918 0.99142 1.21501 0.97217 0.98138 0.97995 1.22495 0.91681 1.03583 0.96634 1.20852 0.87333 0.73512 0.78744 1.93213 1.81193 1.44960 1.96376 1.93139 1.92484 1.92086 1.39457 1.93138 1.76666 1.62452 1.85005 1.21562 0.99332 1.02837 0.91681 1.21744 0.95540 0.98922 0.99372 0.93529 0.78061 0.93146 0.91417 0.93522 0.92292 0.89174 0.87804 0.91667 0.89692 0.92244 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.17 4.28 -53.43 -0.23 -17.40 16 10 C 0.17 3.16 3.10 -67.93 -0.21 2.95 16 11 C -0.13 -2.14 5.61 -26.73 -0.15 -2.29 16 12 C -0.11 -1.81 4.80 -26.73 -0.13 -1.94 16 13 C -0.12 -1.79 2.17 -90.62 -0.20 -1.99 16 14 C 0.45 6.80 2.69 37.16 0.10 6.90 16 15 F -0.18 -3.08 16.28 2.25 0.04 -3.04 16 16 F -0.19 -2.85 16.80 2.25 0.04 -2.81 16 17 F -0.19 -2.79 16.80 2.25 0.04 -2.75 16 18 C -0.12 -1.77 4.79 -26.73 -0.13 -1.90 16 19 C -0.12 -1.80 5.61 -26.73 -0.15 -1.95 16 20 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.38 9.76 6.06 -40.82 -0.25 9.51 16 22 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.88 7.80 -51.93 -0.41 0.47 16 26 H 0.09 1.80 7.26 -51.93 -0.38 1.42 16 27 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.06 0.87 7.80 -51.93 -0.41 0.47 16 29 H 0.08 1.54 6.16 -51.93 -0.32 1.22 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -28.74 262.30 -5.41 -34.15 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.83 Total: 5.04 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.11 Total: -7.27 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.50 Total: -44.45 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 0.11 Total: -8.60 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.74 -5.41 -34.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725622634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.357 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds