Wall clock time and date at job start Sun Mar 29 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 12 12 C 1.53004 * 109.47278 * 300.00073 * 11 10 9 13 13 C 1.52999 * 109.47194 * 300.00130 * 12 11 10 14 14 C 1.52998 * 109.47153 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.47534 * 299.99892 * 14 13 12 16 16 F 1.39903 * 109.47162 * 60.00388 * 14 13 12 17 17 F 1.39908 * 109.46861 * 179.97438 * 14 13 12 18 18 C 1.53006 * 109.47148 * 59.99641 * 13 12 11 19 19 C 1.52998 * 109.47063 * 300.00349 * 18 13 12 20 20 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 23 23 H 1.08997 * 109.47293 * 60.00168 * 11 10 9 24 24 H 1.09003 * 109.47189 * 180.02562 * 11 10 9 25 25 H 1.09000 * 109.47238 * 179.97438 * 12 11 10 26 26 H 1.09003 * 109.46809 * 60.00014 * 12 11 10 27 27 H 1.09003 * 109.47147 * 299.99677 * 13 12 11 28 28 H 1.08997 * 109.47326 * 180.02562 * 18 13 12 29 29 H 1.09003 * 109.47067 * 59.99987 * 18 13 12 30 30 H 1.09003 * 109.46883 * 299.99751 * 19 18 13 31 31 H 1.08997 * 109.47445 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 2.4223 -4.0429 -1.4277 12 6 1.1443 -4.1962 -2.2548 13 6 0.2668 -5.2884 -1.6400 14 6 -1.0114 -5.4412 -2.4668 15 9 -1.7107 -4.2296 -2.4727 16 9 -0.6787 -5.7941 -3.7790 17 9 -1.8135 -6.4404 -1.9049 18 6 -0.0976 -4.9023 -0.2050 19 6 1.1804 -4.7490 0.6220 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.9685 -3.5476 0.5965 23 1 3.0474 -3.2648 -1.8657 24 1 2.9669 -4.9871 -1.4227 25 1 1.4039 -4.4708 -3.2772 26 1 0.5994 -3.2522 -2.2598 27 1 0.8118 -6.2324 -1.6351 28 1 -0.7223 -5.6806 0.2332 29 1 -0.6425 -3.9583 -0.2100 30 1 1.7254 -5.6930 0.6270 31 1 0.9209 -4.4735 1.6442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725622634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:46 Heat of formation + Delta-G solvation = -183.155871 kcal Electronic energy + Delta-G solvation = -17956.034510 eV Core-core repulsion = 14627.918572 eV Total energy + Delta-G solvation = -3328.115938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.05953 -48.54435 -48.52919 -39.84560 -35.64559 -33.26020 -31.67940 -30.46401 -26.56662 -25.39053 -23.59544 -22.60248 -20.27194 -19.29945 -19.18563 -19.03576 -18.43753 -16.62395 -16.25738 -15.61646 -15.46232 -15.31530 -15.18380 -14.96401 -14.70512 -14.69440 -14.46455 -14.34672 -13.52325 -13.45709 -13.03951 -12.83468 -12.66751 -12.61466 -12.17751 -12.04372 -11.87280 -11.46367 -11.27398 -10.98902 -10.78542 -8.92003 -7.89086 -5.15263 1.48011 1.48823 1.56960 1.85284 2.59476 2.87992 3.07316 3.15101 3.44602 3.83650 3.88579 4.07861 4.17157 4.35035 4.41402 4.53799 4.60195 4.66916 4.86423 5.02716 5.08400 5.30666 5.31856 5.33386 5.49840 5.61500 5.65270 6.34163 7.40240 8.21020 8.41566 9.34460 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.034178 B = 0.007439 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.052700 B = 3762.800897 C = 4007.534305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.966 3.034 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.733 5.733 10 C 0.158 3.842 11 C -0.121 4.121 12 C -0.108 4.108 13 C -0.115 4.115 14 C 0.450 3.550 15 F -0.196 7.196 16 F -0.188 7.188 17 F -0.185 7.185 18 C -0.114 4.114 19 C -0.109 4.109 20 H 0.247 0.753 21 H 0.373 0.627 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -14.690 -3.052 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.796 3.204 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.050 3.950 11 C -0.161 4.161 12 C -0.145 4.145 13 C -0.134 4.134 14 C 0.396 3.604 15 F -0.178 7.178 16 F -0.169 7.169 17 F -0.167 7.167 18 C -0.152 4.152 19 C -0.147 4.147 20 H 0.056 0.944 21 H 0.206 0.794 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.162 0.838 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.915 -14.583 -3.049 15.021 hybrid contribution -0.534 1.437 -0.300 1.563 sum 1.380 -13.146 -3.349 13.636 Atomic orbital electron populations 1.69820 1.06507 1.25631 1.60232 1.25470 0.96244 1.00809 1.04607 0.85241 0.77808 0.80219 0.77137 1.21952 1.22680 1.19386 1.19638 0.91393 0.85434 1.39781 0.90669 1.42719 1.05511 1.00815 1.88382 1.20595 0.94508 0.85529 0.94372 1.21986 0.95801 1.01231 0.97070 1.21397 0.96983 0.96902 0.99246 1.22487 0.91082 1.04443 0.95402 1.20981 0.87514 0.72934 0.78988 1.93184 1.81728 1.46386 1.96475 1.93143 1.92420 1.91976 1.39398 1.93148 1.76619 1.62029 1.84897 1.21516 0.99343 1.01747 0.92590 1.21677 0.95233 0.99360 0.98384 0.94385 0.79365 0.93397 0.93613 0.89297 0.90700 0.93676 0.83830 0.89306 0.93496 0.88058 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.77 13.06 21.65 0.28 -59.48 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.23 -12.48 9.93 84.03 0.83 -11.65 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.73 -35.24 4.28 -322.94 -1.38 -36.62 16 10 C 0.16 5.62 3.10 44.99 0.14 5.76 16 11 C -0.12 -3.72 5.61 30.59 0.17 -3.55 16 12 C -0.11 -3.34 4.80 30.60 0.15 -3.20 16 13 C -0.12 -2.98 2.17 -10.79 -0.02 -3.00 16 14 C 0.45 12.79 2.69 71.98 0.19 12.99 16 15 F -0.20 -6.91 16.28 44.97 0.73 -6.18 16 16 F -0.19 -5.22 16.80 44.97 0.76 -4.47 16 17 F -0.19 -4.97 16.80 44.97 0.76 -4.21 16 18 C -0.11 -3.24 4.79 30.60 0.15 -3.10 16 19 C -0.11 -3.02 5.61 30.59 0.17 -2.85 16 20 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 21 H 0.37 19.57 6.06 -92.71 -0.56 19.01 16 22 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 2.07 7.80 -2.39 -0.02 2.05 16 26 H 0.04 1.82 7.26 -2.39 -0.02 1.81 16 27 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.09 2.11 7.80 -2.39 -0.02 2.09 16 29 H 0.05 1.71 6.16 -2.39 -0.01 1.70 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.35 262.30 6.00 -57.35 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.58 Total: 17.87 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 2.25 Total: -12.68 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -1.10 Total: -96.10 kcal Atomic # 9 Polarization: -17.10 SS G_CDS: 2.24 Total: -14.86 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -63.35 6.00 -57.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725622634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.801 kcal (2) G-P(sol) polarization free energy of solvation -63.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds