Wall clock time and date at job start Sun Mar 29 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1 6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47131 * 35.00777 * 10 9 7 12 12 C 1.52998 * 109.47262 * 275.00203 * 10 9 7 13 13 C 1.53000 * 109.47012 * 300.00018 * 12 10 9 14 14 C 1.52994 * 109.47410 * 299.99924 * 13 12 10 15 15 C 1.53007 * 109.47007 * 59.99923 * 14 13 12 16 16 H 1.09002 * 109.46474 * 60.00286 * 15 14 13 17 17 C 1.53002 * 109.46926 * 179.97438 * 15 14 13 18 18 F 1.39906 * 109.46743 * 180.02562 * 17 15 14 19 19 F 1.39895 * 109.47406 * 300.00379 * 17 15 14 20 20 F 1.39895 * 109.46906 * 60.00404 * 17 15 14 21 21 C 1.52992 * 109.47232 * 300.00065 * 15 14 13 22 22 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 23 23 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 24 24 H 1.09001 * 109.47093 * 60.00233 * 12 10 9 25 25 H 1.09002 * 109.47121 * 180.02562 * 12 10 9 26 26 H 1.09007 * 109.47050 * 180.02562 * 13 12 10 27 27 H 1.09002 * 109.47176 * 60.00036 * 13 12 10 28 28 H 1.09002 * 109.47517 * 299.99953 * 14 13 12 29 29 H 1.09002 * 109.47548 * 179.97438 * 14 13 12 30 30 H 1.09002 * 109.47274 * 300.00009 * 21 15 14 31 31 H 1.08997 * 109.47063 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5901 12 6 2.4221 -4.0356 -1.4364 13 6 1.1438 -4.1847 -2.2638 14 6 0.2666 -5.2801 -1.6543 15 6 -0.0974 -4.9013 -0.2173 16 1 -0.6424 -3.9573 -0.2174 17 6 -0.9751 -5.9963 0.3921 18 9 -1.3084 -5.6497 1.7059 19 9 -2.1439 -6.1322 -0.3647 20 9 -0.2761 -7.2081 0.3920 21 6 1.1808 -4.7521 0.6102 22 1 -0.4850 0.8401 -0.0004 23 1 0.3556 -2.3880 -0.0039 24 1 3.0470 -3.2552 -1.8707 25 1 2.9667 -4.9798 -1.4364 26 1 1.4031 -4.4551 -3.2875 27 1 0.5988 -3.2408 -2.2639 28 1 0.8115 -6.2241 -1.6543 29 1 -0.6443 -5.3860 -2.2435 30 1 1.7259 -5.6961 0.6102 31 1 0.9216 -4.4818 1.6338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725622647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:00 Heat of formation + Delta-G solvation = -182.922378 kcal Electronic energy + Delta-G solvation = -17934.042596 eV Core-core repulsion = 14605.936783 eV Total energy + Delta-G solvation = -3328.105813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.07913 -48.56558 -48.53245 -39.89107 -35.60387 -33.12100 -32.30444 -29.97120 -26.61886 -25.63450 -23.36273 -22.74101 -20.31007 -19.42594 -19.18890 -19.13368 -18.24123 -16.58175 -16.20178 -15.61137 -15.54160 -15.25782 -15.20050 -15.08750 -14.95662 -14.71840 -14.69523 -14.04565 -13.56121 -13.43484 -12.89862 -12.88661 -12.76485 -12.60519 -12.27507 -12.07431 -11.80265 -11.42809 -11.30062 -11.06043 -10.78829 -8.95237 -7.90976 -5.17476 1.48300 1.49102 1.58270 1.81292 2.58582 2.83586 3.06724 3.11716 3.43931 3.76900 3.85487 4.04990 4.15859 4.35920 4.41963 4.49360 4.58371 4.72742 4.80317 5.04659 5.07332 5.10808 5.32166 5.37979 5.52907 5.57630 5.67599 6.32194 7.38676 8.15553 8.37726 9.32748 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.035405 B = 0.007308 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.664305 B = 3830.346113 C = 4111.882852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.298 1.298 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.732 5.732 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.130 4.130 13 C -0.104 4.104 14 C -0.105 4.105 15 C -0.125 4.125 16 H 0.094 0.906 17 C 0.458 3.542 18 F -0.192 7.192 19 F -0.188 7.188 20 F -0.179 7.179 21 C -0.112 4.112 22 H 0.248 0.752 23 H 0.373 0.627 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 -13.970 -2.029 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.226 1.226 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.170 4.170 13 C -0.142 4.142 14 C -0.142 4.142 15 C -0.145 4.145 16 H 0.112 0.888 17 C 0.404 3.596 18 F -0.174 7.174 19 F -0.170 7.170 20 F -0.161 7.161 21 C -0.150 4.150 22 H 0.057 0.943 23 H 0.206 0.794 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.417 -13.893 -1.994 14.107 hybrid contribution -0.435 1.186 0.237 1.285 sum 0.982 -12.707 -1.757 12.866 Atomic orbital electron populations 1.69804 1.06464 1.25674 1.60176 1.25452 0.96264 1.00750 1.04432 0.85171 0.78357 0.80500 0.76353 1.19079 1.22455 1.22555 1.19643 0.91420 0.85243 1.39859 0.90624 1.42676 1.05424 1.00763 1.88521 1.20428 0.93958 0.84649 0.94764 0.93065 1.22073 0.97243 1.00746 0.96931 1.21291 0.96203 0.97652 0.99063 1.21547 1.01065 1.00130 0.91449 1.22396 0.97192 0.96002 0.98929 0.88809 1.20688 0.79504 0.83390 0.75970 1.93163 1.93182 1.92107 1.38909 1.93149 1.51444 1.96328 1.76045 1.93142 1.78641 1.47970 1.96319 1.21794 0.94296 1.00637 0.98318 0.94283 0.79393 0.93754 0.90103 0.90493 0.94058 0.89005 0.90565 0.88194 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.19 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.73 -34.71 4.28 -322.92 -1.38 -36.09 16 10 C 0.17 6.13 3.10 44.99 0.14 6.27 16 11 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 12 C -0.13 -4.04 5.61 30.59 0.17 -3.87 16 13 C -0.10 -3.12 5.76 30.59 0.18 -2.94 16 14 C -0.10 -2.68 4.96 30.59 0.15 -2.52 16 15 C -0.13 -3.70 1.99 -10.79 -0.02 -3.73 16 16 H 0.09 3.33 6.50 -2.39 -0.02 3.31 16 17 C 0.46 12.84 2.69 71.98 0.19 13.04 16 18 F -0.19 -5.94 16.80 44.97 0.76 -5.18 16 19 F -0.19 -5.36 16.80 44.97 0.76 -4.60 16 20 F -0.18 -4.58 16.28 44.97 0.73 -3.85 16 21 C -0.11 -3.37 4.65 30.59 0.14 -3.23 16 22 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 23 H 0.37 19.03 6.06 -92.71 -0.56 18.47 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.04 1.56 7.60 -2.39 -0.02 1.54 16 28 H 0.09 1.95 7.80 -2.39 -0.02 1.93 16 29 H 0.08 1.84 7.80 -2.39 -0.02 1.82 16 30 H 0.10 2.42 7.80 -2.39 -0.02 2.40 16 31 H 0.06 2.04 7.80 -2.39 -0.02 2.02 16 Total: -1.00 -60.05 262.30 6.01 -54.04 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.58 Total: 18.38 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 2.25 Total: -12.28 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -1.10 Total: -94.28 kcal Atomic # 9 Polarization: -15.87 SS G_CDS: 2.24 Total: -13.63 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -60.05 6.01 -54.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725622647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.882 kcal (2) G-P(sol) polarization free energy of solvation -60.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds