Wall clock time and date at job start Sun Mar 29 2020 21:40:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86803 * 120.00125 * 2 1
4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1
6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1
7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1
9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1
10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2
11 11 H 1.09000 * 109.47131 * 35.00777 * 10 9 7
12 12 C 1.52998 * 109.47262 * 275.00203 * 10 9 7
13 13 C 1.53000 * 109.47012 * 300.00018 * 12 10 9
14 14 C 1.52994 * 109.47410 * 299.99924 * 13 12 10
15 15 C 1.53007 * 109.47007 * 59.99923 * 14 13 12
16 16 H 1.09002 * 109.46474 * 60.00286 * 15 14 13
17 17 C 1.53002 * 109.46926 * 179.97438 * 15 14 13
18 18 F 1.39906 * 109.46743 * 180.02562 * 17 15 14
19 19 F 1.39895 * 109.47406 * 300.00379 * 17 15 14
20 20 F 1.39895 * 109.46906 * 60.00404 * 17 15 14
21 21 C 1.52992 * 109.47232 * 300.00065 * 15 14 13
22 22 H 0.97000 * 119.99693 * 0.02562 * 1 2 3
23 23 H 0.96995 * 120.00302 * 0.27434 * 9 7 2
24 24 H 1.09001 * 109.47093 * 60.00233 * 12 10 9
25 25 H 1.09002 * 109.47121 * 180.02562 * 12 10 9
26 26 H 1.09007 * 109.47050 * 180.02562 * 13 12 10
27 27 H 1.09002 * 109.47176 * 60.00036 * 13 12 10
28 28 H 1.09002 * 109.47517 * 299.99953 * 14 13 12
29 29 H 1.09002 * 109.47548 * 179.97438 * 14 13 12
30 30 H 1.09002 * 109.47274 * 300.00009 * 21 15 14
31 31 H 1.08997 * 109.47063 * 179.97438 * 21 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8915 2.3965 -1.2125
6 1 1.8914 2.3964 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0005
11 1 2.9687 -3.5505 0.5901
12 6 2.4221 -4.0356 -1.4364
13 6 1.1438 -4.1847 -2.2638
14 6 0.2666 -5.2801 -1.6543
15 6 -0.0974 -4.9013 -0.2173
16 1 -0.6424 -3.9573 -0.2174
17 6 -0.9751 -5.9963 0.3921
18 9 -1.3084 -5.6497 1.7059
19 9 -2.1439 -6.1322 -0.3647
20 9 -0.2761 -7.2081 0.3920
21 6 1.1808 -4.7521 0.6102
22 1 -0.4850 0.8401 -0.0004
23 1 0.3556 -2.3880 -0.0039
24 1 3.0470 -3.2552 -1.8707
25 1 2.9667 -4.9798 -1.4364
26 1 1.4031 -4.4551 -3.2875
27 1 0.5988 -3.2408 -2.2639
28 1 0.8115 -6.2241 -1.6543
29 1 -0.6443 -5.3860 -2.2435
30 1 1.7259 -5.6961 0.6102
31 1 0.9216 -4.4818 1.6338
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000725622647.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:40:00
Heat of formation + Delta-G solvation = -182.922378 kcal
Electronic energy + Delta-G solvation = -17934.042596 eV
Core-core repulsion = 14605.936783 eV
Total energy + Delta-G solvation = -3328.105813 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.104 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-51.07913 -48.56558 -48.53245 -39.89107 -35.60387 -33.12100 -32.30444 -29.97120
-26.61886 -25.63450 -23.36273 -22.74101 -20.31007 -19.42594 -19.18890 -19.13368
-18.24123 -16.58175 -16.20178 -15.61137 -15.54160 -15.25782 -15.20050 -15.08750
-14.95662 -14.71840 -14.69523 -14.04565 -13.56121 -13.43484 -12.89862 -12.88661
-12.76485 -12.60519 -12.27507 -12.07431 -11.80265 -11.42809 -11.30062 -11.06043
-10.78829 -8.95237 -7.90976 -5.17476 1.48300 1.49102 1.58270 1.81292
2.58582 2.83586 3.06724 3.11716 3.43931 3.76900 3.85487 4.04990
4.15859 4.35920 4.41963 4.49360 4.58371 4.72742 4.80317 5.04659
5.07332 5.10808 5.32166 5.37979 5.52907 5.57630 5.67599 6.32194
7.38676 8.15553 8.37726 9.32748
Molecular weight = 237.10amu
Principal moments of inertia in cm(-1)
A = 0.035405 B = 0.007308 C = 0.006808
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.664305 B = 3830.346113 C = 4111.882852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.970 5.970
2 C -0.077 4.077
3 Si 0.966 3.034
4 H -0.266 1.266
5 H -0.297 1.297
6 H -0.298 1.298
7 C -0.230 4.230
8 H 0.076 0.924
9 N -0.732 5.732
10 C 0.170 3.830
11 H 0.051 0.949
12 C -0.130 4.130
13 C -0.104 4.104
14 C -0.105 4.105
15 C -0.125 4.125
16 H 0.094 0.906
17 C 0.458 3.542
18 F -0.192 7.192
19 F -0.188 7.188
20 F -0.179 7.179
21 C -0.112 4.112
22 H 0.248 0.752
23 H 0.373 0.627
24 H 0.044 0.956
25 H 0.080 0.920
26 H 0.076 0.924
27 H 0.041 0.959
28 H 0.091 0.909
29 H 0.076 0.924
30 H 0.100 0.900
31 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.270 -13.970 -2.029 14.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.621 5.621
2 C -0.269 4.269
3 Si 0.796 3.204
4 H -0.191 1.191
5 H -0.225 1.225
6 H -0.226 1.226
7 C -0.362 4.362
8 H 0.094 0.906
9 N -0.374 5.374
10 C 0.062 3.938
11 H 0.069 0.931
12 C -0.170 4.170
13 C -0.142 4.142
14 C -0.142 4.142
15 C -0.145 4.145
16 H 0.112 0.888
17 C 0.404 3.596
18 F -0.174 7.174
19 F -0.170 7.170
20 F -0.161 7.161
21 C -0.150 4.150
22 H 0.057 0.943
23 H 0.206 0.794
24 H 0.062 0.938
25 H 0.099 0.901
26 H 0.095 0.905
27 H 0.059 0.941
28 H 0.110 0.890
29 H 0.094 0.906
30 H 0.118 0.882
31 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 1.417 -13.893 -1.994 14.107
hybrid contribution -0.435 1.186 0.237 1.285
sum 0.982 -12.707 -1.757 12.866
Atomic orbital electron populations
1.69804 1.06464 1.25674 1.60176 1.25452 0.96264 1.00750 1.04432
0.85171 0.78357 0.80500 0.76353 1.19079 1.22455 1.22555 1.19643
0.91420 0.85243 1.39859 0.90624 1.42676 1.05424 1.00763 1.88521
1.20428 0.93958 0.84649 0.94764 0.93065 1.22073 0.97243 1.00746
0.96931 1.21291 0.96203 0.97652 0.99063 1.21547 1.01065 1.00130
0.91449 1.22396 0.97192 0.96002 0.98929 0.88809 1.20688 0.79504
0.83390 0.75970 1.93163 1.93182 1.92107 1.38909 1.93149 1.51444
1.96328 1.76045 1.93142 1.78641 1.47970 1.96319 1.21794 0.94296
1.00637 0.98318 0.94283 0.79393 0.93754 0.90103 0.90493 0.94058
0.89005 0.90565 0.88194 0.91914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.48 13.06 21.65 0.28 -58.19 16
2 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16
3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16
4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16
6 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16
7 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16
8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16
9 N -0.73 -34.71 4.28 -322.92 -1.38 -36.09 16
10 C 0.17 6.13 3.10 44.99 0.14 6.27 16
11 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16
12 C -0.13 -4.04 5.61 30.59 0.17 -3.87 16
13 C -0.10 -3.12 5.76 30.59 0.18 -2.94 16
14 C -0.10 -2.68 4.96 30.59 0.15 -2.52 16
15 C -0.13 -3.70 1.99 -10.79 -0.02 -3.73 16
16 H 0.09 3.33 6.50 -2.39 -0.02 3.31 16
17 C 0.46 12.84 2.69 71.98 0.19 13.04 16
18 F -0.19 -5.94 16.80 44.97 0.76 -5.18 16
19 F -0.19 -5.36 16.80 44.97 0.76 -4.60 16
20 F -0.18 -4.58 16.28 44.97 0.73 -3.85 16
21 C -0.11 -3.37 4.65 30.59 0.14 -3.23 16
22 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16
23 H 0.37 19.03 6.06 -92.71 -0.56 18.47 16
24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
26 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16
27 H 0.04 1.56 7.60 -2.39 -0.02 1.54 16
28 H 0.09 1.95 7.80 -2.39 -0.02 1.93 16
29 H 0.08 1.84 7.80 -2.39 -0.02 1.82 16
30 H 0.10 2.42 7.80 -2.39 -0.02 2.40 16
31 H 0.06 2.04 7.80 -2.39 -0.02 2.02 16
Total: -1.00 -60.05 262.30 6.01 -54.04
By element:
Atomic # 1 Polarization: 17.80 SS G_CDS: 0.58 Total: 18.38 kcal
Atomic # 6 Polarization: -14.54 SS G_CDS: 2.25 Total: -12.28 kcal
Atomic # 7 Polarization: -93.18 SS G_CDS: -1.10 Total: -94.28 kcal
Atomic # 9 Polarization: -15.87 SS G_CDS: 2.24 Total: -13.63 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal
Total: -60.05 6.01 -54.04 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000725622647.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -128.882 kcal
(2) G-P(sol) polarization free energy of solvation -60.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.929 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -182.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds