Wall clock time and date at job start Sun Mar 29 2020 21:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47603 * 34.99380 * 10 9 7 12 12 C 1.53002 * 109.47134 * 274.99769 * 10 9 7 13 13 C 1.53000 * 109.47458 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46889 * 59.99620 * 13 12 10 15 15 C 1.52998 * 109.47375 * 300.00051 * 14 13 12 16 16 H 1.08997 * 109.46869 * 299.99982 * 15 14 13 17 17 C 1.53000 * 109.47263 * 180.02562 * 15 14 13 18 18 F 1.39905 * 109.47124 * 299.99897 * 17 15 14 19 19 F 1.39899 * 109.46986 * 59.99742 * 17 15 14 20 20 F 1.39903 * 109.47030 * 180.02562 * 17 15 14 21 21 C 1.53000 * 109.47154 * 60.00110 * 15 14 13 22 22 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 24 24 H 1.09007 * 109.46938 * 299.99905 * 12 10 9 25 25 H 1.08996 * 109.47299 * 59.99480 * 12 10 9 26 26 H 1.08996 * 109.46870 * 300.00256 * 13 12 10 27 27 H 1.08993 * 109.47268 * 179.97438 * 13 12 10 28 28 H 1.09007 * 109.46838 * 180.02562 * 14 13 12 29 29 H 1.09001 * 109.47258 * 60.00817 * 14 13 12 30 30 H 1.08993 * 109.47268 * 180.02562 * 21 15 14 31 31 H 1.09007 * 109.46865 * 59.99984 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9683 -3.5509 0.5885 12 6 2.4229 -4.0350 -1.4385 13 6 3.1873 -5.3604 -1.4387 14 6 2.3091 -6.4556 -0.8303 15 6 1.9443 -6.0775 0.6066 16 1 2.8545 -5.9720 1.1968 17 6 1.0666 -7.1730 1.2152 18 9 -0.1018 -7.3090 0.4578 19 9 1.7661 -8.3846 1.2151 20 9 0.7325 -6.8269 2.5289 21 6 1.1799 -4.7521 0.6068 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3556 -2.3880 -0.0016 24 1 1.5126 -4.1410 -2.0287 25 1 3.0481 -3.2545 -1.8721 26 1 4.0975 -5.2548 -0.8484 27 1 3.4469 -5.6300 -2.4623 28 1 2.8539 -7.3998 -0.8300 29 1 1.3989 -6.5612 -1.4206 30 1 0.9203 -4.4825 1.6304 31 1 0.2695 -4.8577 0.0165 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725622648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:03 Heat of formation + Delta-G solvation = -187.766386 kcal Electronic energy + Delta-G solvation = -17608.288175 eV Core-core repulsion = 14279.972310 eV Total energy + Delta-G solvation = -3328.315865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.13020 -48.61423 -48.59329 -39.82787 -36.32782 -33.28199 -32.45916 -29.54888 -26.69705 -25.56930 -23.31954 -22.54953 -21.07472 -19.53521 -19.26386 -19.21274 -18.43555 -16.72987 -16.16990 -15.81514 -15.59275 -15.30386 -15.28852 -15.14639 -14.99465 -14.77511 -14.75064 -14.44193 -13.83045 -13.49073 -12.96357 -12.80498 -12.65388 -12.32978 -12.18392 -11.92502 -11.65926 -11.60080 -11.45618 -11.11012 -10.84644 -9.12533 -8.38464 -5.32645 1.58625 1.68555 1.74949 1.84739 2.69515 2.77827 2.96472 3.04260 3.40596 3.60054 3.72841 3.92911 4.10652 4.20421 4.32009 4.34915 4.43266 4.48229 4.63448 4.95636 4.98406 5.06081 5.13134 5.24539 5.41704 5.52922 5.62221 6.49816 7.09842 7.99834 8.11516 9.13524 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.040613 B = 0.006165 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.269950 B = 4540.817556 C = 4879.019295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.107 4.107 3 Si 1.127 2.873 4 H -0.295 1.295 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.328 4.328 8 H 0.069 0.931 9 N -0.752 5.752 10 C 0.183 3.817 11 H 0.047 0.953 12 C -0.131 4.131 13 C -0.103 4.103 14 C -0.112 4.112 15 C -0.119 4.119 16 H 0.130 0.870 17 C 0.456 3.544 18 F -0.189 7.189 19 F -0.181 7.181 20 F -0.192 7.192 21 C -0.115 4.115 22 H 0.243 0.757 23 H 0.358 0.642 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -16.248 -0.190 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.298 4.298 3 Si 0.951 3.049 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.459 4.459 8 H 0.087 0.913 9 N -0.393 5.393 10 C 0.075 3.925 11 H 0.065 0.935 12 C -0.172 4.172 13 C -0.141 4.141 14 C -0.149 4.149 15 C -0.138 4.138 16 H 0.148 0.852 17 C 0.403 3.597 18 F -0.170 7.170 19 F -0.162 7.162 20 F -0.173 7.173 21 C -0.154 4.154 22 H 0.054 0.946 23 H 0.189 0.811 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.481 -14.625 -0.160 15.998 hybrid contribution -0.772 -1.639 0.195 1.822 sum 5.710 -16.264 0.036 17.237 Atomic orbital electron populations 1.70994 1.07264 1.27853 1.56500 1.27187 0.97098 1.04701 1.00773 0.82643 0.73384 0.71660 0.77176 1.22098 1.20340 1.20309 1.20376 0.92354 0.86914 1.46256 0.91346 1.42658 1.04643 1.01923 1.90092 1.20286 0.93725 0.83841 0.94645 0.93501 1.22128 0.99634 0.97284 0.98105 1.21418 0.98038 0.92531 1.02074 1.21623 1.01504 1.00167 0.91598 1.22439 0.99124 0.91376 1.00902 0.85185 1.20726 0.79738 0.83305 0.75980 1.93155 1.51586 1.96280 1.76013 1.93164 1.78621 1.48131 1.96327 1.93168 1.93240 1.92065 1.38862 1.21730 0.98909 0.93077 1.01651 0.94632 0.81061 0.93613 0.93843 0.90696 0.89786 0.88401 0.91030 0.91909 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.72 13.70 21.65 0.30 -61.42 16 2 C -0.11 -6.20 5.50 84.86 0.47 -5.74 16 3 Si 1.13 51.85 29.92 68.60 2.05 53.90 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.33 -18.27 9.93 84.03 0.83 -17.43 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.75 -37.57 5.12 -322.96 -1.65 -39.23 16 10 C 0.18 6.92 2.77 44.99 0.12 7.04 16 11 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 12 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 13 C -0.10 -2.31 5.92 30.59 0.18 -2.13 16 14 C -0.11 -2.27 4.96 30.59 0.15 -2.12 16 15 C -0.12 -2.78 2.16 -10.79 -0.02 -2.80 16 16 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 17 C 0.46 11.05 2.69 71.98 0.19 11.25 16 18 F -0.19 -4.97 16.28 44.97 0.73 -4.24 16 19 F -0.18 -4.04 16.80 44.97 0.76 -3.29 16 20 F -0.19 -5.19 16.80 44.97 0.76 -4.43 16 21 C -0.12 -3.62 4.43 30.59 0.14 -3.49 16 22 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 23 H 0.36 18.90 6.63 -92.71 -0.61 18.29 16 24 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.54 7.80 -2.38 -0.02 1.53 16 29 H 0.07 1.53 7.80 -2.39 -0.02 1.51 16 30 H 0.06 2.11 7.80 -2.39 -0.02 2.10 16 31 H 0.06 2.13 7.80 -2.38 -0.02 2.11 16 Total: -1.00 -65.01 265.03 5.84 -59.18 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.66 Total: 19.11 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 2.23 Total: -19.58 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -1.36 Total: -100.65 kcal Atomic # 9 Polarization: -14.20 SS G_CDS: 2.24 Total: -11.96 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.05 Total: 53.90 kcal Total: -65.01 5.84 -59.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725622648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.588 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds