Wall clock time and date at job start Sun Mar 29 2020 21:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 13 13 C 1.52997 * 109.47165 * 59.99819 * 12 10 9 14 14 C 1.53004 * 109.47119 * 60.00284 * 13 12 10 15 15 C 1.52998 * 109.46870 * 299.99896 * 14 13 12 16 16 H 1.08998 * 109.47555 * 300.00080 * 15 14 13 17 17 C 1.53002 * 109.46752 * 179.97438 * 15 14 13 18 18 F 1.39892 * 109.46950 * 60.00667 * 17 15 14 19 19 F 1.39904 * 109.46831 * 179.97438 * 17 15 14 20 20 F 1.39891 * 109.47636 * 299.99988 * 17 15 14 21 21 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 22 22 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47555 * 179.97438 * 12 10 9 25 25 H 1.09003 * 109.47032 * 299.99839 * 12 10 9 26 26 H 1.09000 * 109.47117 * 180.02562 * 13 12 10 27 27 H 1.08998 * 109.47227 * 299.99980 * 13 12 10 28 28 H 1.08998 * 109.47097 * 60.00257 * 14 13 12 29 29 H 1.08997 * 109.46784 * 180.02562 * 14 13 12 30 30 H 1.09000 * 109.46894 * 59.99595 * 21 10 9 31 31 H 1.08998 * 109.47683 * 179.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 2.4209 -4.0363 1.4355 13 6 1.1420 -4.1857 2.2619 14 6 0.2652 -5.2808 1.6512 15 6 -0.0977 -4.9013 0.2141 16 1 -0.6427 -3.9573 0.2141 17 6 -0.9740 -5.9967 -0.3967 18 9 -2.1434 -6.1338 0.3587 19 9 -1.3063 -5.6494 -1.7106 20 9 -0.2742 -7.2080 -0.3969 21 6 1.1812 -4.7519 -0.6123 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3556 -2.3880 -0.0016 24 1 2.9654 -4.9805 1.4355 25 1 3.0455 -3.2562 1.8706 26 1 1.4006 -4.4557 3.2858 27 1 0.5971 -3.2418 2.2620 28 1 0.8101 -6.2248 1.6512 29 1 -0.6461 -5.3869 2.2397 30 1 0.9227 -4.4816 -1.6361 31 1 1.7263 -5.6958 -0.6127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725622650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:07 Heat of formation + Delta-G solvation = -166.554601 kcal Electronic energy + Delta-G solvation = -17983.693776 eV Core-core repulsion = 14656.297723 eV Total energy + Delta-G solvation = -3327.396053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.95294 -47.43566 -47.40989 -38.62914 -34.11145 -31.54017 -30.95460 -28.05511 -25.45835 -23.48929 -22.15712 -21.56844 -19.11266 -18.07922 -18.03349 -17.70115 -16.87382 -15.07253 -14.92139 -14.39897 -14.10737 -13.95382 -13.83255 -13.80560 -13.59506 -13.56749 -13.50870 -12.89146 -12.32264 -11.81568 -11.62097 -11.58149 -11.14526 -10.78475 -10.73056 -10.18209 -10.06405 -9.94303 -9.82939 -9.18308 -8.91330 -7.06978 -6.12052 -3.12451 2.94826 3.50577 3.53652 3.71251 3.97066 4.19558 4.24035 4.64976 4.93975 4.98319 5.29553 5.45975 5.53916 5.54695 5.62267 5.72687 5.80940 5.90939 6.01296 6.20140 6.21948 6.35876 6.60115 6.69043 6.82383 6.91988 7.79112 8.72636 9.19083 10.05373 10.20027 11.35818 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.035614 B = 0.007338 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.028890 B = 3814.724191 C = 4094.271872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.065 0.935 9 N -0.733 5.733 10 C 0.185 3.815 11 H 0.056 0.944 12 C -0.136 4.136 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.127 4.127 16 H 0.115 0.885 17 C 0.451 3.549 18 F -0.188 7.188 19 F -0.184 7.184 20 F -0.187 7.187 21 C -0.122 4.122 22 H 0.253 0.747 23 H 0.365 0.635 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -12.452 1.598 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.243 4.243 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.377 5.377 10 C 0.075 3.925 11 H 0.073 0.927 12 C -0.177 4.177 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.147 4.147 16 H 0.133 0.867 17 C 0.397 3.603 18 F -0.169 7.169 19 F -0.166 7.166 20 F -0.168 7.168 21 C -0.160 4.160 22 H 0.065 0.935 23 H 0.199 0.801 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.665 -10.784 1.565 10.917 hybrid contribution -0.310 -1.909 -0.109 1.937 sum 0.355 -12.692 1.456 12.780 Atomic orbital electron populations 1.70905 1.06030 1.28273 1.53646 1.25743 0.97037 1.00965 1.00507 0.83253 0.74228 0.75727 0.75818 1.21079 1.22326 1.22310 1.20027 0.92005 0.85729 1.48282 0.91720 1.42484 1.04642 1.00685 1.89855 1.20095 0.93984 0.85242 0.93215 0.92655 1.22170 0.96850 0.99844 0.98800 1.21346 0.96780 0.98540 0.97833 1.21571 1.00723 1.00055 0.92608 1.22477 0.97589 0.96645 0.97974 0.86664 1.20863 0.79592 0.83416 0.76423 1.93149 1.51315 1.96323 1.76137 1.93174 1.93128 1.91970 1.38310 1.93128 1.78815 1.48519 1.96373 1.21921 0.94295 1.00626 0.99194 0.93545 0.80053 0.93475 0.91698 0.92554 0.90589 0.91294 0.91395 0.90773 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.58 13.70 55.49 0.76 -27.82 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.55 29.92 -169.99 -5.09 20.47 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.33 -8.92 9.93 -15.06 -0.15 -9.07 16 8 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.73 -17.30 4.27 -53.43 -0.23 -17.52 16 10 C 0.18 3.48 3.10 -67.94 -0.21 3.27 16 11 H 0.06 1.08 8.08 -51.92 -0.42 0.66 16 12 C -0.14 -2.30 5.61 -26.73 -0.15 -2.45 16 13 C -0.11 -1.70 5.77 -26.73 -0.15 -1.86 16 14 C -0.11 -1.57 4.96 -26.73 -0.13 -1.70 16 15 C -0.13 -1.95 1.99 -90.62 -0.18 -2.13 16 16 H 0.12 1.96 6.51 -51.93 -0.34 1.63 16 17 C 0.45 6.66 2.69 37.16 0.10 6.76 16 18 F -0.19 -2.79 16.80 2.25 0.04 -2.75 16 19 F -0.18 -2.92 16.80 2.25 0.04 -2.88 16 20 F -0.19 -2.66 16.28 2.25 0.04 -2.62 16 21 C -0.12 -1.95 4.64 -26.73 -0.12 -2.07 16 22 H 0.25 7.53 6.77 -40.82 -0.28 7.26 16 23 H 0.37 8.87 4.89 -40.82 -0.20 8.67 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.43 7.60 -51.93 -0.39 1.04 16 28 H 0.07 0.88 7.80 -51.93 -0.41 0.48 16 29 H 0.07 0.89 7.80 -51.93 -0.41 0.49 16 30 H 0.07 1.24 7.80 -51.93 -0.41 0.84 16 31 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16 LS Contribution 260.59 15.07 3.93 3.93 Total: -1.00 -29.22 260.59 -5.34 -34.55 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -3.72 Total: 5.26 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.10 Total: -10.61 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.53 Total: -45.34 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.11 Total: -8.25 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.47 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.22 -5.34 -34.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725622650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.002 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds