Wall clock time and date at job start Sun Mar 29 2020 21:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 13 13 C 1.52997 * 109.47165 * 59.99819 * 12 10 9 14 14 C 1.53004 * 109.47119 * 60.00284 * 13 12 10 15 15 C 1.52998 * 109.46870 * 299.99896 * 14 13 12 16 16 H 1.08998 * 109.47555 * 300.00080 * 15 14 13 17 17 C 1.53002 * 109.46752 * 179.97438 * 15 14 13 18 18 F 1.39892 * 109.46950 * 60.00667 * 17 15 14 19 19 F 1.39904 * 109.46831 * 179.97438 * 17 15 14 20 20 F 1.39891 * 109.47636 * 299.99988 * 17 15 14 21 21 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 22 22 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47555 * 179.97438 * 12 10 9 25 25 H 1.09003 * 109.47032 * 299.99839 * 12 10 9 26 26 H 1.09000 * 109.47117 * 180.02562 * 13 12 10 27 27 H 1.08998 * 109.47227 * 299.99980 * 13 12 10 28 28 H 1.08998 * 109.47097 * 60.00257 * 14 13 12 29 29 H 1.08997 * 109.46784 * 180.02562 * 14 13 12 30 30 H 1.09000 * 109.46894 * 59.99595 * 21 10 9 31 31 H 1.08998 * 109.47683 * 179.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 2.4209 -4.0363 1.4355 13 6 1.1420 -4.1857 2.2619 14 6 0.2652 -5.2808 1.6512 15 6 -0.0977 -4.9013 0.2141 16 1 -0.6427 -3.9573 0.2141 17 6 -0.9740 -5.9967 -0.3967 18 9 -2.1434 -6.1338 0.3587 19 9 -1.3063 -5.6494 -1.7106 20 9 -0.2742 -7.2080 -0.3969 21 6 1.1812 -4.7519 -0.6123 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3556 -2.3880 -0.0016 24 1 2.9654 -4.9805 1.4355 25 1 3.0455 -3.2562 1.8706 26 1 1.4006 -4.4557 3.2858 27 1 0.5971 -3.2418 2.2620 28 1 0.8101 -6.2248 1.6512 29 1 -0.6461 -5.3869 2.2397 30 1 0.9227 -4.4816 -1.6361 31 1 1.7263 -5.6958 -0.6127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725622650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:07 Heat of formation + Delta-G solvation = -183.168075 kcal Electronic energy + Delta-G solvation = -17984.414190 eV Core-core repulsion = 14656.297723 eV Total energy + Delta-G solvation = -3328.116467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.15029 -48.63611 -48.60105 -40.03270 -35.95504 -33.16317 -32.37432 -29.77319 -26.70546 -25.54260 -23.49290 -22.85441 -20.54806 -19.43779 -19.30876 -19.24352 -18.39358 -16.72218 -16.29398 -15.82268 -15.57770 -15.35158 -15.25794 -15.20079 -15.03201 -14.78487 -14.76688 -14.23015 -13.67912 -13.35211 -13.02047 -12.90810 -12.65654 -12.57285 -12.29184 -11.90057 -11.53506 -11.47377 -11.31058 -11.08572 -10.80474 -9.07044 -8.34193 -5.27429 1.59200 1.68416 1.73329 1.84549 2.73274 2.75126 2.98234 3.02838 3.44377 3.64831 3.75957 3.86510 4.03913 4.24990 4.31305 4.37865 4.47988 4.62495 4.69744 4.93528 4.97562 4.99063 5.21441 5.28064 5.45067 5.52452 5.67550 6.53795 7.14175 8.05013 8.15757 9.17534 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.035614 B = 0.007338 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.028890 B = 3814.724191 C = 4094.271872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.107 4.107 3 Si 1.124 2.876 4 H -0.296 1.296 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.322 4.322 8 H 0.066 0.934 9 N -0.744 5.744 10 C 0.176 3.824 11 H 0.048 0.952 12 C -0.130 4.130 13 C -0.103 4.103 14 C -0.105 4.105 15 C -0.125 4.125 16 H 0.091 0.909 17 C 0.459 3.541 18 F -0.187 7.187 19 F -0.192 7.192 20 F -0.178 7.178 21 C -0.113 4.113 22 H 0.242 0.758 23 H 0.359 0.641 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -14.012 2.053 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.298 4.298 3 Si 0.950 3.050 4 H -0.223 1.223 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.453 4.453 8 H 0.084 0.916 9 N -0.387 5.387 10 C 0.068 3.932 11 H 0.066 0.934 12 C -0.170 4.170 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.145 4.145 16 H 0.109 0.891 17 C 0.405 3.595 18 F -0.168 7.168 19 F -0.173 7.173 20 F -0.160 7.160 21 C -0.151 4.151 22 H 0.053 0.947 23 H 0.192 0.808 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.751 -12.400 2.021 12.685 hybrid contribution -0.597 -1.517 -0.255 1.650 sum 1.154 -13.917 1.766 14.076 Atomic orbital electron populations 1.71005 1.07164 1.27717 1.56767 1.27043 0.97114 1.04464 1.01173 0.82656 0.73366 0.72000 0.76998 1.22264 1.20530 1.20614 1.20350 0.92264 0.87037 1.45667 0.91601 1.42661 1.04558 1.01588 1.89911 1.20351 0.93798 0.84283 0.94813 0.93407 1.22058 0.97327 1.00731 0.96838 1.21281 0.96106 0.97498 0.99217 1.21556 1.01163 1.00158 0.91351 1.22387 0.97102 0.95976 0.99025 0.89052 1.20634 0.79472 0.83376 0.75986 1.93154 1.51302 1.96311 1.76076 1.93165 1.93193 1.92089 1.38889 1.93146 1.78590 1.47923 1.96312 1.21807 0.94371 1.00696 0.98264 0.94718 0.80769 0.89941 0.93979 0.90292 0.94411 0.88824 0.90328 0.91973 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.75 13.70 21.65 0.30 -60.45 16 2 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16 3 Si 1.12 51.76 29.92 68.60 2.05 53.81 16 4 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.32 -17.54 9.93 84.03 0.83 -16.70 16 8 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.74 -35.54 4.27 -322.95 -1.38 -36.92 16 10 C 0.18 6.46 3.10 44.99 0.14 6.60 16 11 H 0.05 1.82 8.08 -2.38 -0.02 1.81 16 12 C -0.13 -4.11 5.61 30.59 0.17 -3.94 16 13 C -0.10 -3.09 5.77 30.59 0.18 -2.92 16 14 C -0.10 -2.66 4.96 30.59 0.15 -2.50 16 15 C -0.13 -3.65 1.99 -10.79 -0.02 -3.67 16 16 H 0.09 3.15 6.51 -2.39 -0.02 3.14 16 17 C 0.46 12.66 2.69 71.98 0.19 12.86 16 18 F -0.19 -5.22 16.80 44.97 0.76 -4.46 16 19 F -0.19 -5.85 16.80 44.97 0.76 -5.09 16 20 F -0.18 -4.50 16.28 44.97 0.73 -3.77 16 21 C -0.11 -3.42 4.64 30.60 0.14 -3.27 16 22 H 0.24 14.98 6.77 -92.71 -0.63 14.35 16 23 H 0.36 17.99 4.89 -92.71 -0.45 17.54 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.42 7.60 -2.39 -0.02 1.40 16 28 H 0.09 1.97 7.80 -2.39 -0.02 1.95 16 29 H 0.08 1.86 7.80 -2.39 -0.02 1.84 16 30 H 0.06 2.03 7.80 -2.39 -0.02 2.01 16 31 H 0.10 2.48 7.80 -2.39 -0.02 2.46 16 Total: -1.00 -62.84 260.59 6.30 -56.54 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.83 Total: 19.57 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 2.25 Total: -19.22 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -1.08 Total: -97.38 kcal Atomic # 9 Polarization: -15.56 SS G_CDS: 2.24 Total: -13.32 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -62.84 6.30 -56.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725622650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.624 kcal (2) G-P(sol) polarization free energy of solvation -62.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds