Wall clock time and date at job start Sun Mar 29 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50695 * 112.84847 * 38.19934 * 3 2 1 5 5 O 1.20825 * 120.00300 * 228.79900 * 4 3 2 6 6 O 1.34229 * 120.00111 * 48.80523 * 4 3 2 7 7 C 1.45203 * 117.00207 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.46889 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.46702 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46802 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00095 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99582 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00386 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99581 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47375 * 89.99888 * 14 12 10 16 16 H 1.48505 * 109.46828 * 210.00091 * 14 12 10 17 17 H 1.48497 * 109.46986 * 329.99444 * 14 12 10 18 18 C 1.53781 * 113.61479 * 267.00473 * 3 2 1 19 19 C 1.53781 * 87.08070 * 270.88348 * 18 3 2 20 20 C 1.53786 * 87.17350 * 334.52830 * 19 18 3 21 21 H 1.09000 * 109.46895 * 299.99534 * 7 6 4 22 22 H 1.08998 * 109.47112 * 60.00144 * 7 6 4 23 23 H 1.09000 * 109.47095 * 299.99562 * 8 7 6 24 24 H 1.08998 * 109.47003 * 60.00228 * 8 7 6 25 25 H 1.08998 * 109.47281 * 300.00324 * 9 8 7 26 26 H 1.09007 * 109.46811 * 60.00320 * 9 8 7 27 27 H 0.97001 * 120.00429 * 179.97438 * 13 12 10 28 28 H 1.08999 * 113.61181 * 156.33404 * 18 3 2 29 29 H 1.09000 * 113.69133 * 25.44231 * 18 3 2 30 30 H 1.09002 * 113.61445 * 89.11830 * 19 18 3 31 31 H 1.09002 * 113.61408 * 219.93560 * 19 18 3 32 32 H 1.08992 * 113.61675 * 140.02412 * 20 19 18 33 33 H 1.09000 * 113.60973 * 270.92699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1937 -1.0904 -0.8588 5 8 4.0637 -1.8041 -0.4189 6 8 2.7488 -1.2694 -2.1125 7 6 3.3588 -2.3389 -2.8821 8 6 2.7272 -2.3894 -4.2748 9 6 3.3705 -3.5160 -5.0859 10 6 2.7480 -3.5661 -6.4575 11 1 1.9716 -2.8644 -6.7241 12 6 3.1697 -4.5079 -7.3719 13 7 4.1155 -5.3621 -7.0475 14 14 2.3986 -4.5696 -9.0722 15 1 3.1639 -3.6933 -9.9949 16 1 2.4266 -5.9655 -9.5781 17 1 0.9922 -4.0992 -8.9952 18 6 3.2240 0.0746 1.4071 19 6 3.1703 1.6048 1.2647 20 6 3.2244 1.3889 -0.2570 21 1 4.4292 -2.1551 -2.9746 22 1 3.1960 -3.2899 -2.3750 23 1 1.6569 -2.5735 -4.1819 24 1 2.8897 -1.4384 -4.7821 25 1 4.4408 -3.3316 -5.1788 26 1 3.2083 -4.4672 -4.5787 27 1 4.4120 -6.0250 -7.6907 28 1 4.2372 -0.3236 1.4616 29 1 2.5738 -0.3141 2.1908 30 1 2.2340 2.0429 1.6105 31 1 4.0482 2.1117 1.6653 32 1 2.5735 2.0604 -0.8167 33 1 4.2378 1.3494 -0.6565 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736841358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:34 Heat of formation + Delta-G solvation = -52.754066 kcal Electronic energy + Delta-G solvation = -15962.381044 eV Core-core repulsion = 13181.776493 eV Total energy + Delta-G solvation = -2780.604551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17045 -38.96705 -36.61192 -35.97343 -34.03503 -31.76027 -28.65844 -26.85128 -26.26726 -23.47945 -21.66545 -21.51892 -20.40917 -18.36707 -17.03043 -16.76828 -16.20396 -16.12695 -15.22155 -14.49890 -14.40063 -13.96622 -13.83301 -13.19432 -13.02563 -12.90456 -12.30707 -12.24657 -12.08298 -11.89660 -11.69718 -11.29045 -10.99908 -10.97428 -10.69279 -10.67829 -10.47918 -10.38904 -9.77215 -9.53109 -9.18658 -8.40386 -6.05216 -4.08299 1.86582 2.26414 2.35915 2.85593 3.30317 3.36041 3.36584 3.40409 3.91475 4.01218 4.25316 4.41398 4.56596 4.91027 5.18149 5.26997 5.30899 5.42049 5.45243 5.47808 5.50897 5.52927 5.81426 5.94251 6.35119 6.49404 6.73621 6.93882 7.17626 7.57497 7.68121 7.68727 7.92864 8.33822 8.97832 9.56214 11.06209 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047592 B = 0.004088 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.199050 B = 6847.800273 C = 7118.788468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.231 3.769 3 C 0.006 3.994 4 C 0.480 3.520 5 O -0.492 6.492 6 O -0.351 6.351 7 C 0.067 3.933 8 C -0.110 4.110 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.103 4.103 19 C -0.142 4.142 20 C -0.107 4.107 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.262 0.738 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 13.463 16.078 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.088 4.088 3 C 0.001 3.999 4 C 0.320 3.680 5 O -0.379 6.379 6 O -0.266 6.266 7 C -0.006 4.006 8 C -0.148 4.148 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.142 4.142 19 C -0.179 4.179 20 C -0.145 4.145 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.815 13.053 16.086 20.732 hybrid contribution 0.101 -0.400 -1.101 1.175 sum -0.714 12.652 14.986 19.626 Atomic orbital electron populations 1.81256 1.11703 1.07024 1.07388 1.27505 0.93106 0.94264 0.93938 1.19165 0.84047 0.97203 0.99440 1.22529 0.80741 0.82965 0.81797 1.90691 1.29737 1.43948 1.73480 1.86537 1.61703 1.53727 1.24682 1.23624 0.97772 0.86957 0.92222 1.21789 1.00499 1.02101 0.90378 1.19057 0.96137 0.92017 0.94076 1.21169 1.20911 1.16284 0.97695 0.92427 1.25021 0.95077 0.95473 0.98829 1.69959 1.28913 1.19050 1.35430 0.86545 0.79736 0.77251 0.84206 1.20580 1.21169 1.19808 1.23052 1.03107 0.96966 0.91051 1.22948 1.03722 0.95965 0.95281 1.23067 1.02422 0.90652 0.98390 0.91042 0.91260 0.92146 0.92006 0.96140 0.96200 0.92866 0.86410 0.89574 0.89391 0.89336 0.89037 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.77 18.54 42.15 0.78 -4.99 16 2 C 0.23 2.82 14.03 -20.76 -0.29 2.53 16 3 C 0.01 0.06 1.25 -157.50 -0.20 -0.13 16 4 C 0.48 6.69 7.01 36.00 0.25 6.95 16 5 O -0.49 -7.74 15.65 -18.75 -0.29 -8.03 16 6 O -0.35 -5.69 10.03 -39.26 -0.39 -6.09 16 7 C 0.07 1.20 5.47 37.16 0.20 1.40 16 8 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.10 -0.75 6.97 -25.92 -0.18 -0.93 16 19 C -0.14 -0.75 7.78 -25.92 -0.20 -0.95 16 20 C -0.11 -0.74 7.22 -25.77 -0.19 -0.93 16 21 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 22 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.12 0.85 7.44 -51.93 -0.39 0.46 16 29 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.09 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -32.01 296.04 -5.60 -37.61 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -4.57 Total: -6.06 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.30 Total: -7.48 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 1.52 Total: -30.95 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.69 Total: -14.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.01 -5.60 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736841358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.147 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds