Wall clock time and date at job start Sun Mar 29 2020 21:52:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13600 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 C 1.50695 * 112.84847 * 38.19934 * 3 2 1
5 5 O 1.20825 * 120.00300 * 228.79900 * 4 3 2
6 6 O 1.34229 * 120.00111 * 48.80523 * 4 3 2
7 7 C 1.45203 * 117.00207 * 179.97438 * 6 4 3
8 8 C 1.53008 * 109.46889 * 179.97438 * 7 6 4
9 9 C 1.53003 * 109.46702 * 179.97438 * 8 7 6
10 10 C 1.50705 * 109.46802 * 179.97438 * 9 8 7
11 11 H 1.07994 * 120.00095 * 0.02562 * 10 9 8
12 12 C 1.37879 * 119.99582 * 180.02562 * 10 9 8
13 13 N 1.31510 * 120.00386 * 359.97438 * 12 10 9
14 14 Si 1.86803 * 119.99581 * 180.02562 * 12 10 9
15 15 H 1.48491 * 109.47375 * 89.99888 * 14 12 10
16 16 H 1.48505 * 109.46828 * 210.00091 * 14 12 10
17 17 H 1.48497 * 109.46986 * 329.99444 * 14 12 10
18 18 C 1.53781 * 113.61479 * 267.00473 * 3 2 1
19 19 C 1.53781 * 87.08070 * 270.88348 * 18 3 2
20 20 C 1.53786 * 87.17350 * 334.52830 * 19 18 3
21 21 H 1.09000 * 109.46895 * 299.99534 * 7 6 4
22 22 H 1.08998 * 109.47112 * 60.00144 * 7 6 4
23 23 H 1.09000 * 109.47095 * 299.99562 * 8 7 6
24 24 H 1.08998 * 109.47003 * 60.00228 * 8 7 6
25 25 H 1.08998 * 109.47281 * 300.00324 * 9 8 7
26 26 H 1.09007 * 109.46811 * 60.00320 * 9 8 7
27 27 H 0.97001 * 120.00429 * 179.97438 * 13 12 10
28 28 H 1.08999 * 113.61181 * 156.33404 * 18 3 2
29 29 H 1.09000 * 113.69133 * 25.44231 * 18 3 2
30 30 H 1.09002 * 113.61445 * 89.11830 * 19 18 3
31 31 H 1.09002 * 113.61408 * 219.93560 * 19 18 3
32 32 H 1.08992 * 113.61675 * 140.02412 * 20 19 18
33 33 H 1.09000 * 113.60973 * 270.92699 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1937 -1.0904 -0.8588
5 8 4.0637 -1.8041 -0.4189
6 8 2.7488 -1.2694 -2.1125
7 6 3.3588 -2.3389 -2.8821
8 6 2.7272 -2.3894 -4.2748
9 6 3.3705 -3.5160 -5.0859
10 6 2.7480 -3.5661 -6.4575
11 1 1.9716 -2.8644 -6.7241
12 6 3.1697 -4.5079 -7.3719
13 7 4.1155 -5.3621 -7.0475
14 14 2.3986 -4.5696 -9.0722
15 1 3.1639 -3.6933 -9.9949
16 1 2.4266 -5.9655 -9.5781
17 1 0.9922 -4.0992 -8.9952
18 6 3.2240 0.0746 1.4071
19 6 3.1703 1.6048 1.2647
20 6 3.2244 1.3889 -0.2570
21 1 4.4292 -2.1551 -2.9746
22 1 3.1960 -3.2899 -2.3750
23 1 1.6569 -2.5735 -4.1819
24 1 2.8897 -1.4384 -4.7821
25 1 4.4408 -3.3316 -5.1788
26 1 3.2083 -4.4672 -4.5787
27 1 4.4120 -6.0250 -7.6907
28 1 4.2372 -0.3236 1.4616
29 1 2.5738 -0.3141 2.1908
30 1 2.2340 2.0429 1.6105
31 1 4.0482 2.1117 1.6653
32 1 2.5735 2.0604 -0.8167
33 1 4.2378 1.3494 -0.6565
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000736841358.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:52:34
Heat of formation + Delta-G solvation = -70.833384 kcal
Electronic energy + Delta-G solvation = -15963.165022 eV
Core-core repulsion = 13181.776493 eV
Total energy + Delta-G solvation = -2781.388529 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.18026 -39.91321 -37.87099 -36.96900 -35.96528 -33.71560 -29.79591 -28.43659
-26.83912 -25.26826 -22.87102 -22.19896 -22.17305 -19.43320 -18.67361 -17.91953
-17.75377 -17.18258 -16.50738 -15.86882 -15.68394 -15.17987 -15.03148 -14.34612
-14.13042 -14.02917 -13.89715 -13.70077 -13.41857 -12.90967 -12.82761 -12.56407
-12.52061 -12.38050 -12.12277 -11.82503 -11.69451 -11.54400 -11.44932 -11.35904
-11.17697 -10.58051 -8.22935 -6.34312 0.78744 1.19887 1.40834 1.41369
1.42028 1.53273 1.78383 2.40505 2.47463 3.11038 3.24049 3.30150
3.52944 3.74301 3.98071 4.01251 4.31625 4.39462 4.67234 4.74847
4.77181 4.81344 4.90846 4.93982 5.04660 5.13283 5.31573 5.35981
5.47795 5.62402 5.78931 6.17676 6.21248 6.50236 6.81198 7.35238
8.89145
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.047592 B = 0.004088 C = 0.003932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 588.199050 B = 6847.800273 C = 7118.788468
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.442 5.442
2 C 0.250 3.750
3 C -0.002 4.002
4 C 0.479 3.521
5 O -0.510 6.510
6 O -0.358 6.358
7 C 0.076 3.924
8 C -0.096 4.096
9 C 0.026 3.974
10 C -0.546 4.546
11 H 0.062 0.938
12 C 0.001 3.999
13 N -0.932 5.932
14 Si 0.967 3.033
15 H -0.270 1.270
16 H -0.282 1.282
17 H -0.264 1.264
18 C -0.100 4.100
19 C -0.125 4.125
20 C -0.103 4.103
21 H 0.076 0.924
22 H 0.064 0.936
23 H 0.058 0.942
24 H 0.069 0.931
25 H 0.002 0.998
26 H -0.003 1.003
27 H 0.265 0.735
28 H 0.120 0.880
29 H 0.092 0.908
30 H 0.093 0.907
31 H 0.113 0.887
32 H 0.098 0.902
33 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.486 15.108 16.437 22.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.117 5.117
2 C -0.068 4.068
3 C -0.006 4.006
4 C 0.320 3.680
5 O -0.398 6.398
6 O -0.274 6.274
7 C 0.003 3.997
8 C -0.134 4.134
9 C -0.011 4.011
10 C -0.584 4.584
11 H 0.080 0.920
12 C -0.197 4.197
13 N -0.572 5.572
14 Si 0.791 3.209
15 H -0.195 1.195
16 H -0.207 1.207
17 H -0.189 1.189
18 C -0.138 4.138
19 C -0.162 4.162
20 C -0.142 4.142
21 H 0.095 0.905
22 H 0.082 0.918
23 H 0.077 0.923
24 H 0.088 0.912
25 H 0.021 0.979
26 H 0.015 0.985
27 H 0.074 0.926
28 H 0.139 0.861
29 H 0.111 0.889
30 H 0.112 0.888
31 H 0.132 0.868
32 H 0.116 0.884
33 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -0.888 14.718 16.465 22.102
hybrid contribution 0.159 -0.919 -1.152 1.483
sum -0.729 13.798 15.312 20.625
Atomic orbital electron populations
1.81273 1.13011 1.08488 1.08908 1.27825 0.93415 0.92957 0.92609
1.19602 0.82788 0.97585 1.00668 1.23272 0.80424 0.83303 0.80963
1.90684 1.30767 1.44773 1.73545 1.86522 1.61906 1.52989 1.26010
1.23235 0.97739 0.87543 0.91155 1.21476 0.99953 1.00421 0.91550
1.18933 0.95325 0.92768 0.94054 1.21619 1.21201 1.16537 0.98997
0.91962 1.25967 0.95491 0.94971 1.03233 1.70084 1.30281 1.19774
1.37029 0.85417 0.79114 0.77468 0.78882 1.19530 1.20739 1.18876
1.23175 1.02975 0.98750 0.88945 1.22924 1.05210 0.94438 0.93658
1.23236 1.02756 0.88082 1.00094 0.90547 0.91803 0.92319 0.91233
0.97915 0.98497 0.92618 0.86131 0.88921 0.88842 0.86816 0.88383
0.86122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.44 -12.53 18.54 20.01 0.37 -12.15 16
2 C 0.25 5.83 14.03 89.44 1.25 7.09 16
3 C 0.00 -0.03 1.25 -54.12 -0.07 -0.10 16
4 C 0.48 12.88 7.01 71.23 0.50 13.38 16
5 O -0.51 -15.64 15.65 21.97 0.34 -15.30 16
6 O -0.36 -11.39 10.03 -51.41 -0.52 -11.90 16
7 C 0.08 2.74 5.47 71.98 0.39 3.13 16
8 C -0.10 -4.00 5.53 30.60 0.17 -3.83 16
9 C 0.03 1.38 4.97 29.85 0.15 1.53 16
10 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16
11 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16
12 C 0.00 0.08 5.46 84.66 0.46 0.55 16
13 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16
14 Si 0.97 44.07 29.54 68.60 2.03 46.09 16
15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16
18 C -0.10 -1.20 6.97 31.12 0.22 -0.98 16
19 C -0.13 -0.89 7.78 31.12 0.24 -0.65 16
20 C -0.10 -1.15 7.22 31.21 0.23 -0.92 16
21 H 0.08 2.64 8.13 -2.39 -0.02 2.63 16
22 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16
23 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16
24 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16
25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16
26 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16
27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16
28 H 0.12 1.44 7.44 -2.39 -0.02 1.42 16
29 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16
30 H 0.09 0.62 8.13 -2.39 -0.02 0.60 16
31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16
32 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16
33 H 0.12 1.12 8.10 -2.39 -0.02 1.10 16
Total: -1.00 -69.10 296.04 7.38 -61.72
By element:
Atomic # 1 Polarization: -1.93 SS G_CDS: 1.10 Total: -0.84 kcal
Atomic # 6 Polarization: -15.31 SS G_CDS: 3.78 Total: -11.53 kcal
Atomic # 7 Polarization: -68.90 SS G_CDS: 0.66 Total: -68.24 kcal
Atomic # 8 Polarization: -27.03 SS G_CDS: -0.17 Total: -27.20 kcal
Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal
Total: -69.10 7.38 -61.72 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736841358.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.115 kcal
(2) G-P(sol) polarization free energy of solvation -69.103 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.385 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds