Wall clock time and date at job start Sun Mar 29 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50695 * 112.84847 * 38.19934 * 3 2 1 5 5 O 1.20825 * 120.00300 * 228.79900 * 4 3 2 6 6 O 1.34229 * 120.00111 * 48.80523 * 4 3 2 7 7 C 1.45203 * 117.00207 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.46889 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.46702 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46802 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00095 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99582 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00386 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99581 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47375 * 89.99888 * 14 12 10 16 16 H 1.48505 * 109.46828 * 210.00091 * 14 12 10 17 17 H 1.48497 * 109.46986 * 329.99444 * 14 12 10 18 18 C 1.53781 * 113.61479 * 267.00473 * 3 2 1 19 19 C 1.53781 * 87.08070 * 270.88348 * 18 3 2 20 20 C 1.53786 * 87.17350 * 334.52830 * 19 18 3 21 21 H 1.09000 * 109.46895 * 299.99534 * 7 6 4 22 22 H 1.08998 * 109.47112 * 60.00144 * 7 6 4 23 23 H 1.09000 * 109.47095 * 299.99562 * 8 7 6 24 24 H 1.08998 * 109.47003 * 60.00228 * 8 7 6 25 25 H 1.08998 * 109.47281 * 300.00324 * 9 8 7 26 26 H 1.09007 * 109.46811 * 60.00320 * 9 8 7 27 27 H 0.97001 * 120.00429 * 179.97438 * 13 12 10 28 28 H 1.08999 * 113.61181 * 156.33404 * 18 3 2 29 29 H 1.09000 * 113.69133 * 25.44231 * 18 3 2 30 30 H 1.09002 * 113.61445 * 89.11830 * 19 18 3 31 31 H 1.09002 * 113.61408 * 219.93560 * 19 18 3 32 32 H 1.08992 * 113.61675 * 140.02412 * 20 19 18 33 33 H 1.09000 * 113.60973 * 270.92699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1937 -1.0904 -0.8588 5 8 4.0637 -1.8041 -0.4189 6 8 2.7488 -1.2694 -2.1125 7 6 3.3588 -2.3389 -2.8821 8 6 2.7272 -2.3894 -4.2748 9 6 3.3705 -3.5160 -5.0859 10 6 2.7480 -3.5661 -6.4575 11 1 1.9716 -2.8644 -6.7241 12 6 3.1697 -4.5079 -7.3719 13 7 4.1155 -5.3621 -7.0475 14 14 2.3986 -4.5696 -9.0722 15 1 3.1639 -3.6933 -9.9949 16 1 2.4266 -5.9655 -9.5781 17 1 0.9922 -4.0992 -8.9952 18 6 3.2240 0.0746 1.4071 19 6 3.1703 1.6048 1.2647 20 6 3.2244 1.3889 -0.2570 21 1 4.4292 -2.1551 -2.9746 22 1 3.1960 -3.2899 -2.3750 23 1 1.6569 -2.5735 -4.1819 24 1 2.8897 -1.4384 -4.7821 25 1 4.4408 -3.3316 -5.1788 26 1 3.2083 -4.4672 -4.5787 27 1 4.4120 -6.0250 -7.6907 28 1 4.2372 -0.3236 1.4616 29 1 2.5738 -0.3141 2.1908 30 1 2.2340 2.0429 1.6105 31 1 4.0482 2.1117 1.6653 32 1 2.5735 2.0604 -0.8167 33 1 4.2378 1.3494 -0.6565 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736841358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:34 Heat of formation + Delta-G solvation = -70.833384 kcal Electronic energy + Delta-G solvation = -15963.165022 eV Core-core repulsion = 13181.776493 eV Total energy + Delta-G solvation = -2781.388529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.18026 -39.91321 -37.87099 -36.96900 -35.96528 -33.71560 -29.79591 -28.43659 -26.83912 -25.26826 -22.87102 -22.19896 -22.17305 -19.43320 -18.67361 -17.91953 -17.75377 -17.18258 -16.50738 -15.86882 -15.68394 -15.17987 -15.03148 -14.34612 -14.13042 -14.02917 -13.89715 -13.70077 -13.41857 -12.90967 -12.82761 -12.56407 -12.52061 -12.38050 -12.12277 -11.82503 -11.69451 -11.54400 -11.44932 -11.35904 -11.17697 -10.58051 -8.22935 -6.34312 0.78744 1.19887 1.40834 1.41369 1.42028 1.53273 1.78383 2.40505 2.47463 3.11038 3.24049 3.30150 3.52944 3.74301 3.98071 4.01251 4.31625 4.39462 4.67234 4.74847 4.77181 4.81344 4.90846 4.93982 5.04660 5.13283 5.31573 5.35981 5.47795 5.62402 5.78931 6.17676 6.21248 6.50236 6.81198 7.35238 8.89145 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047592 B = 0.004088 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.199050 B = 6847.800273 C = 7118.788468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.250 3.750 3 C -0.002 4.002 4 C 0.479 3.521 5 O -0.510 6.510 6 O -0.358 6.358 7 C 0.076 3.924 8 C -0.096 4.096 9 C 0.026 3.974 10 C -0.546 4.546 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.264 1.264 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.103 4.103 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.002 0.998 26 H -0.003 1.003 27 H 0.265 0.735 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 15.108 16.437 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.068 4.068 3 C -0.006 4.006 4 C 0.320 3.680 5 O -0.398 6.398 6 O -0.274 6.274 7 C 0.003 3.997 8 C -0.134 4.134 9 C -0.011 4.011 10 C -0.584 4.584 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.189 1.189 18 C -0.138 4.138 19 C -0.162 4.162 20 C -0.142 4.142 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.021 0.979 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.888 14.718 16.465 22.102 hybrid contribution 0.159 -0.919 -1.152 1.483 sum -0.729 13.798 15.312 20.625 Atomic orbital electron populations 1.81273 1.13011 1.08488 1.08908 1.27825 0.93415 0.92957 0.92609 1.19602 0.82788 0.97585 1.00668 1.23272 0.80424 0.83303 0.80963 1.90684 1.30767 1.44773 1.73545 1.86522 1.61906 1.52989 1.26010 1.23235 0.97739 0.87543 0.91155 1.21476 0.99953 1.00421 0.91550 1.18933 0.95325 0.92768 0.94054 1.21619 1.21201 1.16537 0.98997 0.91962 1.25967 0.95491 0.94971 1.03233 1.70084 1.30281 1.19774 1.37029 0.85417 0.79114 0.77468 0.78882 1.19530 1.20739 1.18876 1.23175 1.02975 0.98750 0.88945 1.22924 1.05210 0.94438 0.93658 1.23236 1.02756 0.88082 1.00094 0.90547 0.91803 0.92319 0.91233 0.97915 0.98497 0.92618 0.86131 0.88921 0.88842 0.86816 0.88383 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.53 18.54 20.01 0.37 -12.15 16 2 C 0.25 5.83 14.03 89.44 1.25 7.09 16 3 C 0.00 -0.03 1.25 -54.12 -0.07 -0.10 16 4 C 0.48 12.88 7.01 71.23 0.50 13.38 16 5 O -0.51 -15.64 15.65 21.97 0.34 -15.30 16 6 O -0.36 -11.39 10.03 -51.41 -0.52 -11.90 16 7 C 0.08 2.74 5.47 71.98 0.39 3.13 16 8 C -0.10 -4.00 5.53 30.60 0.17 -3.83 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 11 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 12 C 0.00 0.08 5.46 84.66 0.46 0.55 16 13 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 14 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 C -0.10 -1.20 6.97 31.12 0.22 -0.98 16 19 C -0.13 -0.89 7.78 31.12 0.24 -0.65 16 20 C -0.10 -1.15 7.22 31.21 0.23 -0.92 16 21 H 0.08 2.64 8.13 -2.39 -0.02 2.63 16 22 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 23 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.12 1.44 7.44 -2.39 -0.02 1.42 16 29 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 30 H 0.09 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.12 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -69.10 296.04 7.38 -61.72 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.10 Total: -0.84 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 3.78 Total: -11.53 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: 0.66 Total: -68.24 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.17 Total: -27.20 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.10 7.38 -61.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736841358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.115 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds