Wall clock time and date at job start Sun Mar 29 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34514 * 125.79358 * 2 1 4 4 C 1.41373 * 106.84301 * 179.75248 * 3 2 1 5 5 C 1.34511 * 106.84557 * 0.37455 * 4 3 2 6 6 C 1.50694 * 125.79465 * 179.89125 * 5 4 3 7 7 H 1.09008 * 109.47225 * 359.71292 * 6 5 4 8 8 C 1.53001 * 109.47414 * 119.71310 * 6 5 4 9 9 C 1.50700 * 109.47326 * 239.71338 * 6 5 4 10 10 O 1.21296 * 119.99493 * 359.72584 * 9 6 5 11 11 N 1.34778 * 119.99984 * 179.97438 * 9 6 5 12 12 C 1.46496 * 120.00384 * 359.72148 * 11 9 6 13 13 C 1.37101 * 119.99622 * 179.72525 * 11 9 6 14 14 H 1.08000 * 120.00513 * 321.57056 * 13 11 9 15 15 C 1.38951 * 119.99734 * 141.57067 * 13 11 9 16 16 N 1.31412 * 119.99868 * 157.51607 * 15 13 11 17 17 Si 1.86799 * 120.00214 * 337.50549 * 15 13 11 18 18 H 1.48496 * 109.46966 * 95.65912 * 17 15 13 19 19 H 1.48500 * 109.47245 * 215.65833 * 17 15 13 20 20 H 1.48502 * 109.47082 * 335.65948 * 17 15 13 21 21 O 1.34305 * 125.78930 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47038 * 299.99526 * 1 2 3 24 24 H 1.08996 * 109.47164 * 59.99925 * 1 2 3 25 25 H 1.08000 * 126.57492 * 0.02562 * 3 2 1 26 26 H 1.08012 * 126.57957 * 180.23686 * 4 3 2 27 27 H 1.08991 * 109.47114 * 59.99970 * 8 6 5 28 28 H 1.08998 * 109.47396 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.46915 * 299.99753 * 8 6 5 30 30 H 1.09004 * 109.46441 * 88.86014 * 12 11 9 31 31 H 1.08996 * 109.47576 * 208.86498 * 12 11 9 32 32 H 1.09008 * 109.46823 * 328.86672 * 12 11 9 33 33 H 0.96996 * 120.00126 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0058 5 6 3.5814 -0.7122 0.0007 6 6 4.7705 -1.6379 0.0016 7 1 5.6886 -1.0501 0.0021 8 6 4.7292 -2.5201 1.2510 9 6 4.7314 -2.5073 -1.2286 10 8 3.8241 -2.3905 -2.0251 11 7 5.7018 -3.4181 -1.4413 12 6 6.7980 -3.5588 -0.4796 13 6 5.6631 -4.2130 -2.5577 14 1 4.7189 -4.5961 -2.9154 15 6 6.8389 -4.5256 -3.2290 16 7 6.8956 -5.5939 -3.9922 17 14 8.3388 -3.4272 -3.0469 18 1 9.2288 -3.9757 -1.9924 19 1 9.0733 -3.3746 -4.3365 20 1 7.9066 -2.0582 -2.6671 21 8 2.2924 -1.0894 0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.9666 2.1203 0.0004 26 1 4.5213 1.2433 0.0110 27 1 3.8113 -3.1078 1.2506 28 1 5.5895 -3.1893 1.2520 29 1 4.7576 -1.8912 2.1409 30 1 6.5172 -4.2798 0.2882 31 1 7.6921 -3.9077 -0.9962 32 1 7.0000 -2.5935 -0.0153 33 1 7.7164 -5.8124 -4.4605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742601559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:03 Heat of formation + Delta-G solvation = -6.206188 kcal Electronic energy + Delta-G solvation = -17085.153847 eV Core-core repulsion = 14306.567763 eV Total energy + Delta-G solvation = -2778.586084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.24433 -38.89460 -34.84963 -33.84293 -32.81046 -31.98761 -30.76389 -26.73325 -25.98567 -25.31759 -22.94015 -21.42829 -20.11229 -18.79934 -17.11475 -16.19584 -16.16641 -15.63305 -15.50845 -14.38950 -14.23808 -13.59752 -13.41438 -13.00278 -12.86649 -12.67625 -12.47172 -12.40906 -12.31181 -11.97737 -11.72799 -11.58903 -11.21642 -11.01614 -10.79216 -10.29139 -9.94109 -9.52557 -9.05794 -8.51090 -7.90699 -7.73009 -6.40443 -3.97738 2.07926 2.91168 3.01819 3.21123 3.25421 3.26192 3.70637 4.14056 4.40617 4.82919 4.96853 5.11933 5.28818 5.30355 5.42647 5.46261 5.51314 5.58979 5.72604 5.80067 5.91798 5.96742 6.07898 6.12047 6.20478 6.27850 6.41394 6.51632 6.85486 7.53501 7.57985 8.27972 8.50052 8.95736 9.30182 9.75300 10.71671 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040262 B = 0.006850 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.279517 B = 4086.503840 C = 4247.288525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.024 4.024 3 C -0.214 4.214 4 C -0.221 4.221 5 C 0.038 3.962 6 C -0.034 4.034 7 H 0.112 0.888 8 C -0.154 4.154 9 C 0.468 3.532 10 O -0.552 6.552 11 N -0.469 5.469 12 C 0.061 3.939 13 C -0.316 4.316 14 H 0.105 0.895 15 C 0.060 3.940 16 N -0.863 5.863 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.265 1.265 21 O -0.155 6.155 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 9.972 11.658 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.233 4.233 4 C -0.241 4.241 5 C -0.013 4.013 6 C -0.056 4.056 7 H 0.130 0.870 8 C -0.212 4.212 9 C 0.255 3.745 10 O -0.432 6.432 11 N -0.191 5.191 12 C -0.082 4.082 13 C -0.443 4.443 14 H 0.122 0.878 15 C -0.146 4.146 16 N -0.499 5.499 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 O -0.050 6.050 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.060 9.575 11.099 15.210 hybrid contribution 1.153 0.740 -0.092 1.373 sum -2.907 10.314 11.007 15.362 Atomic orbital electron populations 1.20229 0.85645 1.03830 1.02935 1.22344 0.93944 0.84490 1.06667 1.21383 0.92701 0.98939 1.10310 1.21422 0.98072 0.93572 1.10997 1.21694 0.82791 0.93449 1.03387 1.19983 0.93122 0.95527 0.96980 0.86989 1.22038 1.04152 0.99783 0.95180 1.20055 0.85770 0.81539 0.87153 1.90595 1.35751 1.69205 1.47646 1.43605 1.22163 1.32434 1.20908 1.22179 0.92094 1.00282 0.93667 1.19034 0.96599 1.24684 1.04020 0.87794 1.25376 0.98212 0.95447 0.95527 1.69763 1.28471 1.21927 1.29715 0.86944 0.82572 0.82607 0.77368 1.20166 1.21347 1.18900 1.84003 1.16150 1.34490 1.70352 0.90715 0.90199 0.90000 0.84007 0.83900 0.91760 0.90044 0.91974 0.92456 0.91804 0.92494 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.42 36.00 0.38 -0.41 16 2 C -0.02 -0.38 7.32 -35.63 -0.26 -0.65 16 3 C -0.21 -3.27 10.81 -39.71 -0.43 -3.70 16 4 C -0.22 -3.68 10.78 -39.71 -0.43 -4.10 16 5 C 0.04 0.72 5.20 -35.63 -0.19 0.54 16 6 C -0.03 -0.63 2.33 -92.93 -0.22 -0.85 16 7 H 0.11 1.75 7.35 -51.92 -0.38 1.37 16 8 C -0.15 -2.31 8.82 37.16 0.33 -1.98 16 9 C 0.47 11.29 7.02 -10.98 -0.08 11.22 16 10 O -0.55 -15.80 15.68 -1.40 -0.02 -15.82 16 11 N -0.47 -11.50 2.56 -122.19 -0.31 -11.81 16 12 C 0.06 1.18 7.58 59.84 0.45 1.63 16 13 C -0.32 -9.12 9.33 -14.93 -0.14 -9.26 16 14 H 0.10 3.38 7.93 -52.49 -0.42 2.97 16 15 C 0.06 1.68 5.29 -17.47 -0.09 1.59 16 16 N -0.86 -25.13 13.96 55.50 0.77 -24.35 16 17 Si 0.88 20.56 25.09 -169.99 -4.27 16.30 16 18 H -0.27 -5.90 6.69 56.52 0.38 -5.52 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 21 O -0.15 -3.05 10.34 -1.26 -0.01 -3.06 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.12 4.53 -51.93 -0.24 0.89 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.97 6.87 -51.93 -0.36 0.61 16 31 H 0.06 1.30 3.46 -51.93 -0.18 1.12 16 32 H 0.06 0.89 6.11 -51.92 -0.32 0.57 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -34.42 274.82 -4.37 -38.80 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.00 Total: 1.79 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.67 Total: -5.98 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.46 Total: -36.16 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.04 Total: -18.89 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.27 Total: 16.30 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.42 -4.37 -38.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742601559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.591 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds