Wall clock time and date at job start Sun Mar 29 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 C 1.47195 * 109.47199 * 239.99907 * 2 1 3 5 5 N 2.60800 * 109.47246 * 240.00070 * 2 1 3 6 6 C 1.50705 * 109.47332 * 119.99629 * 2 1 3 7 7 O 1.20827 * 119.99613 * 125.05401 * 6 2 1 8 8 O 1.34229 * 120.00153 * 305.06260 * 6 2 1 9 9 C 1.45198 * 116.99856 * 185.10341 * 8 6 2 10 10 C 1.53001 * 109.46878 * 184.87225 * 9 8 6 11 11 C 1.50700 * 115.55248 * 296.14102 * 10 9 8 12 12 H 1.07996 * 120.00174 * 95.19795 * 11 10 9 13 13 C 1.37879 * 119.99687 * 274.92218 * 11 10 9 14 14 N 1.31514 * 120.00315 * 355.42186 * 13 11 10 15 15 Si 1.86802 * 119.99932 * 175.41846 * 13 11 10 16 16 H 1.48503 * 109.47127 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46696 * 120.00079 * 15 13 11 18 18 H 1.48491 * 109.47366 * 240.00078 * 15 13 11 19 19 C 1.53003 * 117.49715 * 81.81217 * 10 9 8 20 20 C 1.53005 * 117.49725 * 150.47000 * 10 9 8 21 21 H 1.09000 * 109.46959 * 299.99495 * 1 2 3 22 22 H 1.08997 * 109.47116 * 59.99945 * 1 2 3 23 23 H 1.09001 * 109.46654 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46963 * 184.86736 * 3 2 1 25 25 H 1.08994 * 109.47253 * 304.87303 * 3 2 1 26 26 H 1.09002 * 109.47505 * 64.87170 * 3 2 1 27 27 H 1.08997 * 109.47164 * 64.87758 * 9 8 6 28 28 H 1.08991 * 109.47034 * 304.87205 * 9 8 6 29 29 H 0.96998 * 120.00470 * 184.99438 * 14 13 11 30 30 H 1.09004 * 117.49717 * 215.00604 * 19 10 9 31 31 H 1.09000 * 117.50051 * 0.02562 * 19 10 9 32 32 H 1.09000 * 117.49519 * 359.97438 * 20 10 9 33 33 H 1.08999 * 117.49726 * 144.97763 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3995 -1.2294 -2.1294 6 6 2.0325 -0.7103 1.2305 7 8 2.8005 -1.6368 1.1220 8 8 1.6266 -0.3140 2.4471 9 6 2.2371 -0.9674 3.5910 10 6 1.5678 -0.4761 4.8761 11 6 1.7406 0.9899 5.1795 12 1 0.9799 1.6963 4.8816 13 6 2.8671 1.4285 5.8425 14 7 3.7473 0.5596 6.2894 15 14 3.1433 3.2572 6.1057 16 1 2.0147 4.0187 5.5125 17 1 3.2210 3.5415 7.5611 18 1 4.4133 3.6650 5.4532 19 6 0.2437 -1.1293 5.2772 20 6 1.5204 -1.4421 6.0617 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1265 1.4438 -0.0872 25 1 1.6071 1.9809 -0.8431 26 1 1.7497 1.9306 0.9304 27 1 3.3003 -0.7289 3.6210 28 1 2.1091 -2.0463 3.5041 29 1 4.5021 0.8621 6.8183 30 1 -0.5026 -0.4987 5.7605 31 1 -0.1504 -1.9094 4.6258 32 1 1.9656 -2.4277 5.9259 33 1 1.6145 -1.0173 7.0611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744279318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:06 Heat of formation + Delta-G solvation = -41.794129 kcal Electronic energy + Delta-G solvation = -16815.868388 eV Core-core repulsion = 14035.739096 eV Total energy + Delta-G solvation = -2780.129293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37627 -37.49769 -36.55666 -35.40125 -34.48025 -32.00085 -27.56168 -27.13363 -25.39248 -24.29843 -21.61350 -21.06161 -19.35816 -17.71943 -17.02024 -16.31735 -15.79482 -15.35683 -14.68620 -14.22561 -13.95391 -13.65374 -13.35075 -12.90747 -12.70930 -12.55530 -12.17583 -12.11725 -11.94766 -11.75599 -11.55321 -11.33669 -11.02549 -10.94131 -10.56950 -10.32826 -10.10254 -10.01065 -9.55031 -8.96985 -8.51218 -8.26726 -6.10487 -4.18241 2.33966 2.42683 2.72459 3.23574 3.31104 3.33126 3.36003 3.68943 4.33974 4.59356 4.73050 4.86004 5.17312 5.32330 5.45456 5.55402 5.60565 5.64196 5.88592 6.00032 6.07055 6.16426 6.23923 6.43224 6.57289 6.68688 6.99782 7.04121 7.27696 7.43517 7.45663 7.81747 8.13570 8.33253 8.84259 9.48130 10.97263 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.007409 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.879813 B = 3778.227314 C = 4261.178495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 C -0.143 4.143 4 C 0.227 3.773 5 N -0.414 5.414 6 C 0.467 3.533 7 O -0.512 6.512 8 O -0.323 6.323 9 C 0.115 3.885 10 C 0.033 3.967 11 C -0.488 4.488 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.891 3.109 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.205 4.205 20 C -0.139 4.139 21 H 0.098 0.902 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 1.818 -7.576 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.041 3.959 3 C -0.201 4.201 4 C -0.092 4.092 5 N -0.089 5.089 6 C 0.307 3.693 7 O -0.401 6.401 8 O -0.237 6.237 9 C 0.042 3.958 10 C 0.032 3.968 11 C -0.525 4.525 12 H 0.083 0.917 13 C -0.135 4.135 14 N -0.519 5.519 15 Si 0.719 3.281 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.243 4.243 20 C -0.176 4.176 21 H 0.117 0.883 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.247 0.705 -8.910 10.364 hybrid contribution 0.388 0.882 0.664 1.170 sum -4.860 1.588 -8.246 9.703 Atomic orbital electron populations 1.21929 0.88598 1.04156 1.05181 1.17892 0.98962 0.95755 0.83252 1.21949 1.02403 0.90196 1.05543 1.28183 0.93472 0.93503 0.93999 1.81143 1.07861 1.07750 1.12124 1.22750 0.78882 0.81776 0.85851 1.90686 1.33597 1.28156 1.87648 1.86506 1.61913 1.61709 1.13595 1.23025 0.97878 0.93395 0.81517 1.18798 0.94109 0.94724 0.89151 1.20421 1.04478 0.89817 1.37804 0.91681 1.25030 0.95571 0.97635 0.95273 1.69990 1.13401 1.33621 1.34890 0.86544 0.78285 0.85418 0.77863 1.19473 1.21047 1.20946 1.23022 0.92471 1.03445 1.05330 1.22530 0.99089 0.98166 0.97864 0.88279 0.90401 0.91306 0.91179 0.90183 0.88152 0.90773 0.93792 0.92889 0.90008 0.91584 0.91769 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.32 37.16 0.31 -1.07 16 2 C 0.05 0.60 0.89 -158.44 -0.14 0.46 16 3 C -0.14 -1.53 8.41 37.16 0.31 -1.22 16 4 C 0.23 3.38 13.10 -20.76 -0.27 3.10 16 5 N -0.41 -6.93 18.54 42.16 0.78 -6.15 16 6 C 0.47 8.19 6.54 36.01 0.24 8.43 16 7 O -0.51 -10.64 15.69 -18.75 -0.29 -10.93 16 8 O -0.32 -6.24 9.85 -39.26 -0.39 -6.63 16 9 C 0.11 2.53 5.38 37.16 0.20 2.73 16 10 C 0.03 0.76 1.70 -155.66 -0.26 0.50 16 11 C -0.49 -12.41 8.75 -34.44 -0.30 -12.72 16 12 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.07 1.76 5.43 -17.82 -0.10 1.67 16 14 N -0.88 -23.88 12.65 55.43 0.70 -23.18 16 15 Si 0.89 20.00 29.54 -169.99 -5.02 14.97 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 C -0.21 -4.20 9.96 -26.69 -0.27 -4.47 16 20 C -0.14 -3.09 9.15 -26.69 -0.24 -3.34 16 21 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 27 H 0.07 1.80 8.14 -51.93 -0.42 1.37 16 28 H 0.04 0.93 7.93 -51.93 -0.41 0.52 16 29 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 30 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -29.58 298.71 -4.85 -34.43 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.60 Total: -1.09 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.53 Total: -5.92 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 1.48 Total: -29.33 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.68 Total: -17.56 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.58 -4.85 -34.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.369 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds