Wall clock time and date at job start Sun Mar 29 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 C 1.47195 * 109.47199 * 239.99907 * 2 1 3 5 5 N 2.60800 * 109.47246 * 240.00070 * 2 1 3 6 6 C 1.50705 * 109.47332 * 119.99629 * 2 1 3 7 7 O 1.20827 * 119.99613 * 125.05401 * 6 2 1 8 8 O 1.34229 * 120.00153 * 305.06260 * 6 2 1 9 9 C 1.45198 * 116.99856 * 185.10341 * 8 6 2 10 10 C 1.53001 * 109.46878 * 184.87225 * 9 8 6 11 11 C 1.50700 * 115.55248 * 296.14102 * 10 9 8 12 12 H 1.07996 * 120.00174 * 95.19795 * 11 10 9 13 13 C 1.37879 * 119.99687 * 274.92218 * 11 10 9 14 14 N 1.31514 * 120.00315 * 355.42186 * 13 11 10 15 15 Si 1.86802 * 119.99932 * 175.41846 * 13 11 10 16 16 H 1.48503 * 109.47127 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46696 * 120.00079 * 15 13 11 18 18 H 1.48491 * 109.47366 * 240.00078 * 15 13 11 19 19 C 1.53003 * 117.49715 * 81.81217 * 10 9 8 20 20 C 1.53005 * 117.49725 * 150.47000 * 10 9 8 21 21 H 1.09000 * 109.46959 * 299.99495 * 1 2 3 22 22 H 1.08997 * 109.47116 * 59.99945 * 1 2 3 23 23 H 1.09001 * 109.46654 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46963 * 184.86736 * 3 2 1 25 25 H 1.08994 * 109.47253 * 304.87303 * 3 2 1 26 26 H 1.09002 * 109.47505 * 64.87170 * 3 2 1 27 27 H 1.08997 * 109.47164 * 64.87758 * 9 8 6 28 28 H 1.08991 * 109.47034 * 304.87205 * 9 8 6 29 29 H 0.96998 * 120.00470 * 184.99438 * 14 13 11 30 30 H 1.09004 * 117.49717 * 215.00604 * 19 10 9 31 31 H 1.09000 * 117.50051 * 0.02562 * 19 10 9 32 32 H 1.09000 * 117.49519 * 359.97438 * 20 10 9 33 33 H 1.08999 * 117.49726 * 144.97763 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3995 -1.2294 -2.1294 6 6 2.0325 -0.7103 1.2305 7 8 2.8005 -1.6368 1.1220 8 8 1.6266 -0.3140 2.4471 9 6 2.2371 -0.9674 3.5910 10 6 1.5678 -0.4761 4.8761 11 6 1.7406 0.9899 5.1795 12 1 0.9799 1.6963 4.8816 13 6 2.8671 1.4285 5.8425 14 7 3.7473 0.5596 6.2894 15 14 3.1433 3.2572 6.1057 16 1 2.0147 4.0187 5.5125 17 1 3.2210 3.5415 7.5611 18 1 4.4133 3.6650 5.4532 19 6 0.2437 -1.1293 5.2772 20 6 1.5204 -1.4421 6.0617 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1265 1.4438 -0.0872 25 1 1.6071 1.9809 -0.8431 26 1 1.7497 1.9306 0.9304 27 1 3.3003 -0.7289 3.6210 28 1 2.1091 -2.0463 3.5041 29 1 4.5021 0.8621 6.8183 30 1 -0.5026 -0.4987 5.7605 31 1 -0.1504 -1.9094 4.6258 32 1 1.9656 -2.4277 5.9259 33 1 1.6145 -1.0173 7.0611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744279318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:05 Heat of formation + Delta-G solvation = -57.703081 kcal Electronic energy + Delta-G solvation = -16816.558252 eV Core-core repulsion = 14035.739096 eV Total energy + Delta-G solvation = -2780.819157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.82305 -38.95279 -38.04865 -37.00331 -35.61063 -33.95038 -28.84450 -28.35581 -27.30079 -25.42708 -23.09983 -22.68051 -21.17046 -19.10550 -18.56716 -17.92561 -17.34626 -16.70591 -16.50635 -15.69168 -15.35286 -14.92852 -14.70824 -14.26305 -14.03694 -13.94578 -13.55062 -13.29693 -13.19323 -12.96326 -12.86061 -12.82768 -12.63326 -12.30421 -12.26645 -12.03011 -11.70827 -11.59196 -11.25841 -10.83091 -10.41489 -10.04104 -8.06615 -6.19332 0.99944 1.08383 1.46043 1.50173 1.53170 1.60273 2.03170 2.47455 2.53923 3.21085 3.38715 3.67231 3.67808 3.77266 4.15890 4.40611 4.48679 4.67821 4.69817 4.76743 4.80363 4.83067 4.90938 5.03378 5.22990 5.24162 5.29202 5.42721 5.59532 5.69142 5.82545 6.26095 6.40493 6.65431 6.87633 7.49911 9.00893 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.007409 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.879813 B = 3778.227314 C = 4261.178495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 C -0.143 4.143 4 C 0.243 3.757 5 N -0.449 5.449 6 C 0.465 3.535 7 O -0.549 6.549 8 O -0.321 6.321 9 C 0.127 3.873 10 C 0.003 3.997 11 C -0.495 4.495 12 H 0.064 0.936 13 C 0.021 3.979 14 N -0.914 5.914 15 Si 0.950 3.050 16 H -0.258 1.258 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.175 4.175 20 C -0.147 4.147 21 H 0.105 0.895 22 H 0.112 0.888 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.259 0.741 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 3.035 -8.539 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.051 3.949 3 C -0.200 4.200 4 C -0.076 4.076 5 N -0.124 5.124 6 C 0.308 3.692 7 O -0.440 6.440 8 O -0.235 6.235 9 C 0.053 3.947 10 C 0.003 3.997 11 C -0.532 4.532 12 H 0.082 0.918 13 C -0.179 4.179 14 N -0.552 5.552 15 Si 0.776 3.224 16 H -0.181 1.181 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.212 4.212 20 C -0.184 4.184 21 H 0.124 0.876 22 H 0.130 0.870 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.136 0.864 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.963 1.934 -9.884 12.244 hybrid contribution 0.903 0.471 0.944 1.388 sum -6.060 2.405 -8.941 11.065 Atomic orbital electron populations 1.22050 0.85541 1.04804 1.07242 1.18112 1.01084 0.95892 0.79782 1.22061 1.02060 0.88650 1.07277 1.28493 0.92489 0.92726 0.93877 1.81160 1.09018 1.08700 1.13493 1.23706 0.77903 0.81242 0.86340 1.90675 1.35324 1.30009 1.88005 1.86501 1.61696 1.61516 1.13791 1.22609 0.96000 0.93711 0.82374 1.18898 0.96725 0.94181 0.89894 1.20699 1.04277 0.91085 1.37176 0.91750 1.25727 0.95494 1.01302 0.95354 1.70105 1.13935 1.35313 1.35889 0.85626 0.78220 0.81075 0.77527 1.18121 1.21150 1.21238 1.23033 0.91256 1.02998 1.03929 1.22446 1.01056 0.98260 0.96685 0.87602 0.86970 0.91442 0.92172 0.86357 0.88100 0.94040 0.93224 0.93166 0.89392 0.89065 0.90928 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.32 71.98 0.60 -1.64 16 2 C 0.06 1.33 0.89 -54.73 -0.05 1.28 16 3 C -0.14 -2.66 8.41 71.98 0.61 -2.06 16 4 C 0.24 6.81 13.10 89.44 1.17 7.99 16 5 N -0.45 -14.55 18.54 20.00 0.37 -14.18 16 6 C 0.47 15.94 6.54 71.24 0.47 16.41 16 7 O -0.55 -22.92 15.69 21.96 0.34 -22.58 16 8 O -0.32 -12.11 9.85 -51.41 -0.51 -12.62 16 9 C 0.13 5.60 5.38 71.98 0.39 5.98 16 10 C 0.00 0.16 1.70 -52.92 -0.09 0.07 16 11 C -0.49 -24.97 8.75 25.60 0.22 -24.75 16 12 H 0.06 3.18 7.82 -2.91 -0.02 3.16 16 13 C 0.02 1.09 5.43 84.66 0.46 1.55 16 14 N -0.91 -50.32 12.65 21.45 0.27 -50.05 16 15 Si 0.95 40.82 29.54 68.60 2.03 42.84 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 17 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 19 C -0.18 -6.83 9.96 30.62 0.30 -6.52 16 20 C -0.15 -6.51 9.15 30.62 0.28 -6.23 16 21 H 0.11 1.64 8.03 -2.39 -0.02 1.62 16 22 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.93 8.12 -2.39 -0.02 1.91 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 29 H 0.26 13.73 8.32 -92.71 -0.77 12.95 16 30 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.09 3.09 8.14 -2.39 -0.02 3.08 16 32 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -64.10 298.71 7.96 -56.13 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.09 Total: 8.37 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.36 Total: -7.91 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.64 Total: -64.23 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.16 Total: -35.20 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -64.10 7.96 -56.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.569 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds