Wall clock time and date at job start Sun Mar 29 2020 22:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34629 * 125.89681 * 2 1 4 4 H 0.97001 * 124.80703 * 359.97264 * 3 2 1 5 5 C 1.36428 * 110.38020 * 180.24839 * 3 2 1 6 6 C 1.34434 * 109.08317 * 359.54919 * 5 3 2 7 7 C 1.37846 * 125.89470 * 179.97438 * 2 1 3 8 8 C 1.47104 * 127.02620 * 359.97438 * 7 2 1 9 9 O 1.21555 * 119.99808 * 0.02562 * 8 7 2 10 10 O 1.34784 * 120.00333 * 180.02562 * 8 7 2 11 11 C 1.45198 * 116.99999 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46571 * 179.97438 * 11 10 8 13 13 C 1.53011 * 109.46781 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46728 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00730 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99790 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99790 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00271 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46910 * 90.00301 * 18 16 14 20 20 H 1.48500 * 109.47539 * 210.00446 * 18 16 14 21 21 H 1.48505 * 109.47399 * 330.00925 * 18 16 14 22 22 H 1.09001 * 109.47402 * 90.02919 * 1 2 3 23 23 H 1.09004 * 109.47234 * 210.03097 * 1 2 3 24 24 H 1.09002 * 109.46979 * 330.02522 * 1 2 3 25 25 H 1.07996 * 125.45776 * 179.70387 * 5 3 2 26 26 H 1.08011 * 126.81204 * 180.16866 * 6 5 3 27 27 H 1.09003 * 109.46952 * 299.99211 * 11 10 8 28 28 H 1.08997 * 109.47769 * 59.99906 * 11 10 8 29 29 H 1.08996 * 109.47576 * 299.99376 * 12 11 10 30 30 H 1.08997 * 109.47503 * 59.99852 * 12 11 10 31 31 H 1.08996 * 109.46938 * 300.00234 * 13 12 11 32 32 H 1.08997 * 109.46841 * 59.99914 * 13 12 11 33 33 H 0.96998 * 120.00135 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2963 1.0906 0.0000 4 1 1.9758 2.0061 -0.0004 5 6 3.6109 0.7256 -0.0055 6 6 3.6946 -0.6161 0.0007 7 6 2.3152 -1.1167 0.0005 8 6 1.8831 -2.5229 0.0017 9 8 0.6984 -2.7946 0.0018 10 8 2.8009 -3.5099 0.0025 11 6 2.3024 -4.8736 0.0031 12 6 3.4822 -5.8478 0.0034 13 6 2.9568 -7.2849 0.0046 14 6 4.1188 -8.2445 0.0043 15 1 5.1308 -7.8672 0.0038 16 6 3.8901 -9.6042 0.0058 17 7 2.6577 -10.0637 0.0070 18 14 5.3303 -10.7936 0.0047 19 1 5.7140 -11.1077 1.4046 20 1 4.9390 -12.0443 -0.6938 21 1 6.4832 -10.1745 -0.6973 22 1 -0.3634 -0.0005 -1.0276 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 4.4499 1.4057 -0.0113 26 1 4.5979 -1.2082 0.0012 27 1 1.6948 -5.0380 0.8930 28 1 1.6954 -5.0390 -0.8870 29 1 4.0894 -5.6835 -0.8866 30 1 4.0896 -5.6827 0.8933 31 1 2.3498 -7.4491 0.8949 32 1 2.3492 -7.4504 -0.8850 33 1 2.4968 -11.0202 0.0076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750526076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:53 Heat of formation + Delta-G solvation = -64.652421 kcal Electronic energy + Delta-G solvation = -15816.466964 eV Core-core repulsion = 13035.346461 eV Total energy + Delta-G solvation = -2781.120503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34035 -39.48350 -36.12705 -33.87915 -31.80177 -31.70110 -31.13741 -27.27618 -26.41585 -23.82231 -22.35199 -20.85570 -20.27445 -19.30141 -17.91812 -16.67001 -16.11660 -16.05758 -15.40913 -14.87103 -14.42586 -13.84804 -13.70280 -13.40239 -12.96458 -12.81939 -12.73801 -12.11501 -11.96204 -11.86238 -11.61508 -10.91280 -10.59017 -10.51737 -10.22041 -10.15131 -9.60637 -9.42775 -9.09825 -9.03067 -8.37258 -8.33290 -5.98252 -4.00863 1.50550 2.26771 2.79947 3.34800 3.37040 3.40943 3.44331 3.45246 4.48418 4.60899 4.81084 4.95865 5.24388 5.33015 5.37616 5.42575 5.72458 5.76559 5.78595 5.81729 5.99928 6.16523 6.55736 6.63632 6.65649 6.79023 7.00275 7.11409 7.19718 7.67515 7.79475 8.00791 8.25141 8.42972 9.05585 9.62999 11.13281 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056008 B = 0.003822 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.810836 B = 7323.771566 C = 7792.530675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.109 3.891 3 N -0.550 5.550 4 H 0.417 0.583 5 C -0.029 4.029 6 C -0.141 4.141 7 C -0.222 4.222 8 C 0.535 3.465 9 O -0.527 6.527 10 O -0.353 6.353 11 C 0.070 3.930 12 C -0.109 4.109 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.065 0.935 25 H 0.171 0.829 26 H 0.153 0.847 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 23.876 -0.011 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.009 4.009 3 N -0.146 5.146 4 H 0.253 0.747 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.230 4.230 8 C 0.382 3.618 9 O -0.418 6.418 10 O -0.269 6.269 11 C -0.003 4.003 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.099 0.901 23 H 0.120 0.880 24 H 0.084 0.916 25 H 0.188 0.812 26 H 0.171 0.829 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.546 23.705 -0.012 23.756 hybrid contribution 0.590 -0.392 -0.004 0.708 sum -0.956 23.313 -0.017 23.333 Atomic orbital electron populations 1.20612 0.86721 1.04395 1.03717 1.20588 0.93638 0.85486 1.01193 1.41540 1.06375 1.08275 1.58369 0.74664 1.21743 0.85501 0.96528 1.11759 1.22185 0.96208 0.93243 1.04772 1.19536 0.93820 0.89254 1.20421 1.20062 0.83772 0.85581 0.72413 1.90778 1.18275 1.84874 1.47901 1.86559 1.39572 1.17206 1.83571 1.23438 0.98877 0.76013 1.01981 1.21749 0.95618 0.95362 1.01893 1.19055 0.96831 0.87819 0.97666 1.21193 0.92910 0.90958 1.50762 0.92431 1.25035 0.95706 0.98503 0.95281 1.69972 1.19136 1.13619 1.50713 0.86549 0.82634 0.80449 0.78101 1.20645 1.21237 1.19812 0.90141 0.87956 0.91592 0.81165 0.82911 0.91673 0.91675 0.92203 0.92212 0.96237 0.96230 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.90 36.00 0.36 -0.54 16 2 C 0.11 1.21 7.22 -81.51 -0.59 0.63 16 3 N -0.55 -4.30 5.89 -8.88 -0.05 -4.35 16 4 H 0.42 1.66 8.96 -40.82 -0.37 1.29 16 5 C -0.03 -0.25 11.87 -16.85 -0.20 -0.45 16 6 C -0.14 -1.68 11.00 -37.49 -0.41 -2.09 16 7 C -0.22 -3.19 6.33 -103.01 -0.65 -3.85 16 8 C 0.54 9.48 7.95 34.33 0.27 9.76 16 9 O -0.53 -10.13 14.67 -19.31 -0.28 -10.41 16 10 O -0.35 -6.65 10.12 -40.72 -0.41 -7.06 16 11 C 0.07 1.40 5.48 37.16 0.20 1.60 16 12 C -0.11 -2.37 5.53 -26.72 -0.15 -2.52 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.10 1.19 6.51 -51.93 -0.34 0.85 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 26 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 292.41 15.07 4.41 4.41 Total: -1.00 -33.88 292.41 -6.82 -40.69 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -4.47 Total: -2.86 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.72 Total: -10.75 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.68 Total: -30.90 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.70 Total: -17.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.88 -6.82 -40.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750526076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.959 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds