Wall clock time and date at job start Sun Mar 29 2020 22:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34629 * 125.89681 * 2 1 4 4 H 0.97001 * 124.80703 * 359.97264 * 3 2 1 5 5 C 1.36428 * 110.38020 * 180.24839 * 3 2 1 6 6 C 1.34434 * 109.08317 * 359.54919 * 5 3 2 7 7 C 1.37846 * 125.89470 * 179.97438 * 2 1 3 8 8 C 1.47104 * 127.02620 * 359.97438 * 7 2 1 9 9 O 1.21555 * 119.99808 * 0.02562 * 8 7 2 10 10 O 1.34784 * 120.00333 * 180.02562 * 8 7 2 11 11 C 1.45198 * 116.99999 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46571 * 179.97438 * 11 10 8 13 13 C 1.53011 * 109.46781 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46728 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00730 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99790 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99790 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00271 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46910 * 90.00301 * 18 16 14 20 20 H 1.48500 * 109.47539 * 210.00446 * 18 16 14 21 21 H 1.48505 * 109.47399 * 330.00925 * 18 16 14 22 22 H 1.09001 * 109.47402 * 90.02919 * 1 2 3 23 23 H 1.09004 * 109.47234 * 210.03097 * 1 2 3 24 24 H 1.09002 * 109.46979 * 330.02522 * 1 2 3 25 25 H 1.07996 * 125.45776 * 179.70387 * 5 3 2 26 26 H 1.08011 * 126.81204 * 180.16866 * 6 5 3 27 27 H 1.09003 * 109.46952 * 299.99211 * 11 10 8 28 28 H 1.08997 * 109.47769 * 59.99906 * 11 10 8 29 29 H 1.08996 * 109.47576 * 299.99376 * 12 11 10 30 30 H 1.08997 * 109.47503 * 59.99852 * 12 11 10 31 31 H 1.08996 * 109.46938 * 300.00234 * 13 12 11 32 32 H 1.08997 * 109.46841 * 59.99914 * 13 12 11 33 33 H 0.96998 * 120.00135 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2963 1.0906 0.0000 4 1 1.9758 2.0061 -0.0004 5 6 3.6109 0.7256 -0.0055 6 6 3.6946 -0.6161 0.0007 7 6 2.3152 -1.1167 0.0005 8 6 1.8831 -2.5229 0.0017 9 8 0.6984 -2.7946 0.0018 10 8 2.8009 -3.5099 0.0025 11 6 2.3024 -4.8736 0.0031 12 6 3.4822 -5.8478 0.0034 13 6 2.9568 -7.2849 0.0046 14 6 4.1188 -8.2445 0.0043 15 1 5.1308 -7.8672 0.0038 16 6 3.8901 -9.6042 0.0058 17 7 2.6577 -10.0637 0.0070 18 14 5.3303 -10.7936 0.0047 19 1 5.7140 -11.1077 1.4046 20 1 4.9390 -12.0443 -0.6938 21 1 6.4832 -10.1745 -0.6973 22 1 -0.3634 -0.0005 -1.0276 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 4.4499 1.4057 -0.0113 26 1 4.5979 -1.2082 0.0012 27 1 1.6948 -5.0380 0.8930 28 1 1.6954 -5.0390 -0.8870 29 1 4.0894 -5.6835 -0.8866 30 1 4.0896 -5.6827 0.8933 31 1 2.3498 -7.4491 0.8949 32 1 2.3492 -7.4504 -0.8850 33 1 2.4968 -11.0202 0.0076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750526076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:52 Heat of formation + Delta-G solvation = -85.823468 kcal Electronic energy + Delta-G solvation = -15817.385009 eV Core-core repulsion = 13035.346461 eV Total energy + Delta-G solvation = -2782.038548 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20535 -40.85241 -37.63698 -35.90087 -33.69173 -32.53377 -32.15157 -29.07633 -27.45516 -25.49108 -23.82868 -22.14975 -21.67292 -20.52146 -18.85664 -18.51803 -17.68154 -17.56066 -16.62705 -16.48044 -15.89630 -15.23090 -14.80475 -14.48637 -14.15925 -14.01306 -13.75584 -13.65132 -13.64690 -13.44692 -12.81029 -12.58612 -12.49144 -12.31969 -12.03089 -11.71967 -11.38129 -11.37753 -11.20376 -10.56581 -9.90884 -9.19320 -8.20891 -6.32702 0.43174 1.41959 1.44070 1.46347 1.55285 1.72114 2.26577 2.37851 2.44246 3.12656 3.85520 3.92659 4.01561 4.10128 4.19604 4.28206 4.42405 4.61898 4.68834 4.80481 4.84545 4.99844 5.05111 5.08573 5.20818 5.46261 5.58705 5.64099 5.69706 5.80495 5.91742 6.20032 6.61096 6.82181 6.89282 7.36610 8.91541 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056008 B = 0.003822 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.810836 B = 7323.771566 C = 7792.530675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.120 3.880 3 N -0.527 5.527 4 H 0.440 0.560 5 C 0.002 3.998 6 C -0.175 4.175 7 C -0.272 4.272 8 C 0.527 3.473 9 O -0.553 6.553 10 O -0.357 6.357 11 C 0.080 3.920 12 C -0.092 4.092 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.261 1.261 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.216 0.784 26 H 0.149 0.851 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H -0.003 1.003 32 H -0.003 1.003 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 26.248 -0.025 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.001 4.001 3 N -0.125 5.125 4 H 0.281 0.719 5 C -0.125 4.125 6 C -0.198 4.198 7 C -0.280 4.280 8 C 0.376 3.624 9 O -0.447 6.447 10 O -0.274 6.274 11 C 0.006 3.994 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.795 3.205 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.185 1.185 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.121 0.879 25 H 0.232 0.768 26 H 0.167 0.833 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.062 26.133 -0.026 26.133 hybrid contribution 0.086 -0.991 0.001 0.995 sum 0.024 25.142 -0.024 25.143 Atomic orbital electron populations 1.20634 0.85643 1.04815 1.04287 1.20751 0.94415 0.85518 0.99438 1.41566 1.05917 1.08721 1.56281 0.71896 1.22317 0.86543 0.95773 1.07862 1.22316 0.95134 0.95009 1.07337 1.19638 0.96085 0.87951 1.24327 1.20766 0.83362 0.86581 0.71683 1.90751 1.19088 1.85301 1.49540 1.86543 1.40077 1.16690 1.84064 1.23087 0.97771 0.76965 1.01554 1.21450 0.96063 0.93082 1.02409 1.18937 0.96014 0.90688 0.95464 1.21624 0.93699 0.91908 1.50960 0.91680 1.26039 0.98811 1.00598 0.94527 1.70109 1.21599 1.14274 1.51429 0.85355 0.78906 0.77656 0.78565 1.19656 1.20716 1.18531 0.89408 0.90797 0.87879 0.76764 0.83304 0.92156 0.92162 0.91599 0.91590 0.98474 0.98469 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.90 71.24 0.71 -0.93 16 2 C 0.12 2.44 7.22 42.04 0.30 2.75 16 3 N -0.53 -6.27 5.89 -182.02 -1.07 -7.34 16 4 H 0.44 1.37 8.96 -92.71 -0.83 0.54 16 5 C 0.00 0.03 11.87 83.11 0.99 1.01 16 6 C -0.18 -3.96 11.00 23.62 0.26 -3.70 16 7 C -0.27 -7.76 6.33 -18.82 -0.12 -7.88 16 8 C 0.53 19.37 7.95 70.15 0.56 19.92 16 9 O -0.55 -22.27 14.67 19.66 0.29 -21.98 16 10 O -0.36 -13.92 10.12 -56.96 -0.58 -14.50 16 11 C 0.08 3.32 5.48 71.98 0.39 3.71 16 12 C -0.09 -4.14 5.53 30.60 0.17 -3.97 16 13 C 0.03 1.44 4.97 29.85 0.15 1.59 16 14 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 15 H 0.06 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 17 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 18 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.74 6.51 -2.38 -0.02 1.72 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.22 0.93 8.06 -2.91 -0.02 0.90 16 26 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.57 292.41 5.33 -70.24 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.28 Total: 3.08 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.10 Total: -18.67 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.79 Total: -65.07 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.29 Total: -36.48 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -75.57 5.33 -70.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750526076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.579 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds