Wall clock time and date at job start Sun Mar 29 2020 21:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48503 * 109.47141 * 270.00331 * 3 2 1 5 5 H 1.48507 * 109.47063 * 29.99939 * 3 2 1 6 6 H 1.48491 * 109.46958 * 149.99926 * 3 2 1 7 7 C 1.37870 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46981 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46811 * 180.02562 * 10 9 7 12 12 C 1.34229 * 116.99485 * 180.02562 * 11 10 9 13 13 O 1.20820 * 120.00625 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47449 * 179.97438 * 14 12 11 16 16 N 1.46494 * 109.47444 * 180.02562 * 15 14 12 17 17 C 1.36345 * 125.63345 * 90.00307 * 16 15 14 18 18 C 1.34850 * 108.21864 * 179.97438 * 17 16 15 19 19 C 1.40894 * 107.41649 * 0.02562 * 18 17 16 20 20 C 1.34846 * 107.41755 * 359.97438 * 19 18 17 21 21 H 0.97005 * 120.00627 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47180 * 60.00596 * 9 7 2 23 23 H 1.08998 * 109.47130 * 300.00353 * 9 7 2 24 24 H 1.09001 * 109.46785 * 60.00221 * 10 9 7 25 25 H 1.08998 * 109.47369 * 300.00074 * 10 9 7 26 26 H 1.09009 * 109.46880 * 59.99851 * 14 12 11 27 27 H 1.08993 * 109.47272 * 299.99994 * 14 12 11 28 28 H 1.09006 * 109.46659 * 59.99780 * 15 14 12 29 29 H 1.09005 * 109.47449 * 300.00857 * 15 14 12 30 30 H 1.08006 * 125.89009 * 359.71336 * 17 16 15 31 31 H 1.08004 * 126.29266 * 180.02562 * 18 17 16 32 32 H 1.07995 * 126.28821 * 179.97438 * 19 18 17 33 33 H 1.08002 * 125.89342 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9195 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0007 15 6 2.6201 -8.4973 -0.0008 16 7 1.9551 -9.8026 -0.0014 17 6 1.5949 -10.5100 -1.1099 18 6 1.0112 -11.6569 -0.7068 19 6 1.0105 -11.6573 0.7021 20 6 1.5943 -10.5109 1.1063 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8896 24 1 2.8720 -3.6042 0.8895 25 1 2.8721 -3.6043 -0.8905 26 1 0.9439 -7.4786 -0.8909 27 1 0.9434 -7.4784 0.8890 28 1 3.2430 -8.4068 0.8892 29 1 3.2430 -8.4068 -0.8907 30 1 1.7467 -10.2028 -2.1341 31 1 0.6167 -12.4326 -1.3465 32 1 0.6151 -12.4331 1.3409 33 1 1.7495 -10.2064 2.1308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750939868.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:54 Heat of formation + Delta-G solvation = -51.102962 kcal Electronic energy + Delta-G solvation = -15642.649905 eV Core-core repulsion = 12862.116951 eV Total energy + Delta-G solvation = -2780.532954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28510 -40.07070 -36.43230 -34.23985 -33.40182 -30.63934 -29.71073 -28.90044 -25.53065 -24.22794 -21.22358 -20.59639 -20.55056 -20.00477 -18.01302 -16.96826 -16.44838 -16.12917 -15.99385 -14.76529 -14.63956 -14.42761 -13.79987 -13.39882 -13.03194 -12.71156 -12.43279 -12.41376 -12.27077 -12.15291 -11.53577 -11.30291 -11.11440 -10.82213 -10.75847 -10.39191 -9.74186 -9.70590 -9.35915 -8.77576 -8.49257 -8.29183 -6.15022 -4.19952 2.10685 2.38038 2.59201 2.94258 3.25196 3.26504 3.32110 3.37155 4.34925 4.45171 4.46482 4.87212 5.01159 5.09933 5.18599 5.21587 5.22890 5.48425 5.52930 5.56598 5.99297 6.00218 6.15858 6.18991 6.55318 6.85844 6.86465 7.10389 7.22683 7.48929 7.55508 7.80156 8.04379 8.18307 8.85554 9.44858 10.96432 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.076451 B = 0.003388 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.159733 B = 8263.045896 C = 8418.202885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.355 6.355 12 C 0.461 3.539 13 O -0.520 6.520 14 C -0.133 4.133 15 C 0.118 3.882 16 N -0.448 5.448 17 C -0.015 4.015 18 C -0.204 4.204 19 C -0.204 4.204 20 C -0.015 4.015 21 H 0.264 0.736 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -19.217 -0.001 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.271 6.271 12 C 0.304 3.696 13 O -0.410 6.410 14 C -0.171 4.171 15 C -0.004 4.004 16 N -0.124 5.124 17 C -0.145 4.145 18 C -0.229 4.229 19 C -0.229 4.229 20 C -0.145 4.145 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.178 0.822 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.441 -18.683 0.005 18.842 hybrid contribution 0.469 1.020 -0.011 1.123 sum 2.911 -17.663 -0.006 17.901 Atomic orbital electron populations 1.69970 1.06110 1.27074 1.49630 1.24986 0.94927 0.99433 0.94794 0.86460 0.79754 0.82754 0.78276 1.20445 1.21004 1.19710 1.20968 0.93175 0.90086 1.52401 0.92240 1.19181 0.94184 0.89015 0.98927 1.23697 0.96416 0.78583 1.01051 1.86533 1.42414 1.15866 1.82238 1.23167 0.86378 0.87247 0.72837 1.90651 1.15705 1.88443 1.46226 1.21679 0.99605 0.88862 1.06991 1.21599 0.93657 0.79011 1.06136 1.44171 1.46126 1.15759 1.06308 1.21894 1.06289 0.94667 0.91633 1.20905 1.07711 0.99012 0.95235 1.20903 1.07726 0.99006 0.95229 1.21892 1.06256 0.94680 0.91650 0.92645 0.95326 0.95321 0.92172 0.92186 0.87138 0.87131 0.88195 0.88201 0.82208 0.84860 0.84862 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.07 1.62 5.40 37.16 0.20 1.82 16 11 O -0.35 -6.78 10.22 -39.26 -0.40 -7.18 16 12 C 0.46 7.29 7.96 36.01 0.29 7.57 16 13 O -0.52 -9.34 15.73 -18.75 -0.29 -9.64 16 14 C -0.13 -1.45 6.13 -27.88 -0.17 -1.62 16 15 C 0.12 1.16 5.38 -4.05 -0.02 1.14 16 16 N -0.45 -4.59 2.75 -117.13 -0.32 -4.91 16 17 C -0.02 -0.15 11.43 -16.75 -0.19 -0.35 16 18 C -0.20 -2.10 10.86 -39.78 -0.43 -2.53 16 19 C -0.20 -2.10 10.86 -39.78 -0.43 -2.53 16 20 C -0.02 -0.15 11.43 -16.75 -0.19 -0.35 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 25 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 26 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -31.37 295.54 -6.97 -38.34 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.61 Total: -2.05 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.51 Total: -9.76 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.41 Total: -30.34 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.70 Total: -16.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.37 -6.97 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750939868.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.765 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds