Wall clock time and date at job start Sun Mar 29 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47256 * 268.89841 * 3 2 1 5 5 C 1.42903 * 114.00172 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47401 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47336 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99940 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00121 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00222 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00531 * 140.10332 * 10 9 7 12 12 C 1.38954 * 119.99674 * 320.09632 * 10 9 7 13 13 N 1.31418 * 119.99861 * 161.97647 * 12 10 9 14 14 Si 1.86793 * 120.00192 * 341.98302 * 12 10 9 15 15 H 1.48506 * 109.47296 * 93.79749 * 14 12 10 16 16 H 1.48499 * 109.47201 * 213.79800 * 14 12 10 17 17 H 1.48507 * 109.47145 * 333.79704 * 14 12 10 18 18 C 1.46501 * 120.00117 * 359.97438 * 9 7 6 19 19 C 1.52997 * 117.49958 * 182.28822 * 18 9 7 20 20 C 1.53002 * 60.00407 * 252.51456 * 19 18 9 21 21 H 4.38447 * 5.44537 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.46885 * 148.90265 * 3 2 1 23 23 H 1.09004 * 109.47650 * 28.89943 * 3 2 1 24 24 H 1.09000 * 109.47234 * 59.99545 * 5 4 3 25 25 H 1.09008 * 109.46884 * 300.00199 * 5 4 3 26 26 H 1.08999 * 109.46642 * 300.00262 * 6 5 4 27 27 H 1.08997 * 109.47040 * 59.99402 * 6 5 4 28 28 H 0.96994 * 119.99814 * 180.02562 * 13 12 10 29 29 H 1.08993 * 115.54918 * 328.00207 * 18 9 7 30 30 H 1.08997 * 117.50196 * 0.02562 * 19 18 9 31 31 H 1.09002 * 117.50222 * 145.02543 * 19 18 9 32 32 H 1.08997 * 117.49701 * 252.51735 * 20 19 18 33 33 H 1.08995 * 117.51886 * 107.48034 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1223 0.0268 1.3470 5 6 4.5469 0.0302 1.4598 6 6 4.9414 0.0581 2.9378 7 6 6.4437 0.0623 3.0567 8 8 7.1312 0.0442 2.0576 9 7 7.0233 0.0850 4.2732 10 6 8.3900 0.0894 4.3814 11 1 8.8706 0.7036 5.1285 12 6 9.1568 -0.6966 3.5299 13 7 10.4377 -0.4448 3.3788 14 14 8.3669 -2.1109 2.5999 15 1 7.9451 -1.6446 1.2546 16 1 9.3471 -3.2171 2.4555 17 1 7.1805 -2.5956 3.3503 18 6 6.1929 0.1063 5.4800 19 6 6.9096 0.1858 6.8294 20 6 6.2426 -1.1203 6.3933 21 1 -1.0500 0.0002 0.0001 22 1 3.0088 0.8808 -0.5308 23 1 3.0098 -0.8989 -0.4966 24 1 4.9489 0.9111 0.9593 25 1 4.9504 -0.8686 0.9933 26 1 4.5378 0.9565 3.4046 27 1 4.5394 -0.8230 3.4378 28 1 10.9729 -0.9932 2.7841 29 1 5.2389 0.6248 5.3851 30 1 7.9989 0.2228 6.8193 31 1 6.4272 0.7569 7.6226 32 1 5.3213 -1.4083 6.8996 33 1 6.8928 -1.9431 6.0961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755645573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:21 Heat of formation + Delta-G solvation = 18.870544 kcal Electronic energy + Delta-G solvation = -16667.351015 eV Core-core repulsion = 13889.852340 eV Total energy + Delta-G solvation = -2777.498675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.30395 -37.93385 -36.45664 -33.52988 -32.95167 -31.67825 -30.80852 -27.09342 -25.25686 -22.91546 -21.87226 -21.28383 -19.20951 -18.47874 -17.31206 -16.53904 -16.17681 -15.76775 -15.40323 -14.94777 -14.31496 -14.04853 -13.48021 -13.18041 -12.92078 -12.46814 -12.37676 -11.63964 -11.49725 -11.27293 -11.09010 -10.74097 -10.57693 -10.46875 -10.32774 -10.02762 -9.98381 -9.61568 -9.48218 -8.58549 -8.48784 -7.53097 -6.19397 -3.97266 2.40287 2.66941 3.25284 3.47567 3.66553 3.74817 3.82161 4.28560 4.47894 4.60274 4.67239 5.15603 5.18616 5.30025 5.37004 5.41336 5.46692 5.55367 5.63159 5.73365 5.77142 5.87288 6.11211 6.16127 6.21603 6.31914 6.66299 6.83893 7.20546 7.42398 7.82020 7.91945 8.73267 8.85726 9.40426 9.75613 10.84211 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.006985 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.795292 B = 4007.842657 C = 4693.912332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.170 3.830 4 O -0.388 6.388 5 C 0.079 3.921 6 C -0.130 4.130 7 C 0.448 3.552 8 O -0.545 6.545 9 N -0.431 5.431 10 C -0.349 4.349 11 H 0.098 0.902 12 C 0.088 3.912 13 N -0.867 5.867 14 Si 0.922 3.078 15 H -0.251 1.251 16 H -0.315 1.315 17 H -0.284 1.284 18 C 0.061 3.939 19 C -0.172 4.172 20 C -0.198 4.198 21 H 0.221 0.779 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.272 0.728 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 -0.199 -0.990 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.094 3.906 4 O -0.308 6.308 5 C 0.003 3.997 6 C -0.170 4.170 7 C 0.238 3.762 8 O -0.429 6.429 9 N -0.151 5.151 10 C -0.475 4.475 11 H 0.115 0.885 12 C -0.121 4.121 13 N -0.502 5.502 14 Si 0.755 3.245 15 H -0.177 1.177 16 H -0.245 1.245 17 H -0.210 1.210 18 C -0.044 4.044 19 C -0.209 4.209 20 C -0.237 4.237 21 H 0.238 0.762 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.572 -0.208 -1.394 14.640 hybrid contribution -0.328 -0.748 -0.482 0.948 sum -14.899 -0.956 -1.876 15.047 Atomic orbital electron populations 1.24912 0.95826 1.01466 0.98219 1.22691 0.93996 1.00104 1.01569 1.19061 0.84381 1.01726 0.85396 1.87857 1.22687 1.95672 1.24623 1.22244 0.78474 1.01947 0.97046 1.21411 0.95148 1.04217 0.96272 1.19983 0.88723 0.83115 0.84330 1.90521 1.64099 1.52611 1.35698 1.43115 1.05926 1.64214 1.01835 1.18810 0.77894 1.27918 1.22867 0.88462 1.25342 0.94661 0.96902 0.95191 1.69734 1.07228 1.37716 1.35517 0.86189 0.77688 0.78112 0.82532 1.17729 1.24526 1.20977 1.21849 0.96077 1.01630 0.84871 1.23125 1.01853 0.99929 0.96037 1.23270 1.02412 0.93241 1.04760 0.76245 0.90693 0.90783 0.91907 0.92385 0.89176 0.89430 0.91784 0.86920 0.87106 0.89380 0.89424 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.18 -2.33 13.73 -37.12 -0.51 -2.84 16 3 C 0.17 2.17 6.41 34.37 0.22 2.39 16 4 O -0.39 -6.12 10.30 -35.23 -0.36 -6.48 16 5 C 0.08 1.35 5.23 37.16 0.19 1.54 16 6 C -0.13 -2.35 4.70 -27.89 -0.13 -2.48 16 7 C 0.45 10.54 5.88 -10.99 -0.06 10.47 16 8 O -0.54 -14.78 10.82 5.54 0.06 -14.72 16 9 N -0.43 -10.29 2.56 -107.73 -0.28 -10.57 16 10 C -0.35 -9.73 8.77 -14.93 -0.13 -9.87 16 11 H 0.10 2.82 6.96 -52.49 -0.37 2.45 16 12 C 0.09 2.59 4.90 -17.46 -0.09 2.50 16 13 N -0.87 -26.47 13.96 55.50 0.77 -25.70 16 14 Si 0.92 24.68 24.53 -169.99 -4.17 20.51 16 15 H -0.25 -6.94 6.10 56.52 0.34 -6.60 16 16 H -0.31 -8.32 7.11 56.52 0.40 -7.91 16 17 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 18 C 0.06 1.15 5.85 -67.93 -0.40 0.75 16 19 C -0.17 -2.94 9.79 -26.73 -0.26 -3.20 16 20 C -0.20 -3.38 10.37 -26.73 -0.28 -3.65 16 21 H 0.22 1.39 7.80 -54.09 -0.42 0.97 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 25 H 0.06 1.02 8.10 -51.92 -0.42 0.60 16 26 H 0.09 1.44 7.57 -51.93 -0.39 1.04 16 27 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 28 H 0.27 7.85 8.31 -40.82 -0.34 7.52 16 29 H 0.11 1.76 6.99 -51.93 -0.36 1.40 16 30 H 0.11 2.17 6.49 -51.93 -0.34 1.83 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 286.50 15.07 4.32 4.32 Total: -1.00 -33.52 286.50 -4.98 -38.49 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.45 Total: -0.07 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.87 Total: -5.79 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.50 Total: -36.27 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.30 Total: -21.19 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.17 Total: 20.51 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.52 -4.98 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755645573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.365 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds