Wall clock time and date at job start Sun Mar 29 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47256 * 268.89841 * 3 2 1 5 5 C 1.42903 * 114.00172 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47401 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47336 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99940 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00121 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00222 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00531 * 140.10332 * 10 9 7 12 12 C 1.38954 * 119.99674 * 320.09632 * 10 9 7 13 13 N 1.31418 * 119.99861 * 161.97647 * 12 10 9 14 14 Si 1.86793 * 120.00192 * 341.98302 * 12 10 9 15 15 H 1.48506 * 109.47296 * 93.79749 * 14 12 10 16 16 H 1.48499 * 109.47201 * 213.79800 * 14 12 10 17 17 H 1.48507 * 109.47145 * 333.79704 * 14 12 10 18 18 C 1.46501 * 120.00117 * 359.97438 * 9 7 6 19 19 C 1.52997 * 117.49958 * 182.28822 * 18 9 7 20 20 C 1.53002 * 60.00407 * 252.51456 * 19 18 9 21 21 H 4.38447 * 5.44537 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.46885 * 148.90265 * 3 2 1 23 23 H 1.09004 * 109.47650 * 28.89943 * 3 2 1 24 24 H 1.09000 * 109.47234 * 59.99545 * 5 4 3 25 25 H 1.09008 * 109.46884 * 300.00199 * 5 4 3 26 26 H 1.08999 * 109.46642 * 300.00262 * 6 5 4 27 27 H 1.08997 * 109.47040 * 59.99402 * 6 5 4 28 28 H 0.96994 * 119.99814 * 180.02562 * 13 12 10 29 29 H 1.08993 * 115.54918 * 328.00207 * 18 9 7 30 30 H 1.08997 * 117.50196 * 0.02562 * 19 18 9 31 31 H 1.09002 * 117.50222 * 145.02543 * 19 18 9 32 32 H 1.08997 * 117.49701 * 252.51735 * 20 19 18 33 33 H 1.08995 * 117.51886 * 107.48034 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1223 0.0268 1.3470 5 6 4.5469 0.0302 1.4598 6 6 4.9414 0.0581 2.9378 7 6 6.4437 0.0623 3.0567 8 8 7.1312 0.0442 2.0576 9 7 7.0233 0.0850 4.2732 10 6 8.3900 0.0894 4.3814 11 1 8.8706 0.7036 5.1285 12 6 9.1568 -0.6966 3.5299 13 7 10.4377 -0.4448 3.3788 14 14 8.3669 -2.1109 2.5999 15 1 7.9451 -1.6446 1.2546 16 1 9.3471 -3.2171 2.4555 17 1 7.1805 -2.5956 3.3503 18 6 6.1929 0.1063 5.4800 19 6 6.9096 0.1858 6.8294 20 6 6.2426 -1.1203 6.3933 21 1 -1.0500 0.0002 0.0001 22 1 3.0088 0.8808 -0.5308 23 1 3.0098 -0.8989 -0.4966 24 1 4.9489 0.9111 0.9593 25 1 4.9504 -0.8686 0.9933 26 1 4.5378 0.9565 3.4046 27 1 4.5394 -0.8230 3.4378 28 1 10.9729 -0.9932 2.7841 29 1 5.2389 0.6248 5.3851 30 1 7.9989 0.2228 6.8193 31 1 6.4272 0.7569 7.6226 32 1 5.3213 -1.4083 6.8996 33 1 6.8928 -1.9431 6.0961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755645573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:21 Heat of formation + Delta-G solvation = -4.111485 kcal Electronic energy + Delta-G solvation = -16668.347591 eV Core-core repulsion = 13889.852340 eV Total energy + Delta-G solvation = -2778.495251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07541 -39.13645 -38.06925 -35.02039 -34.40221 -33.51034 -32.32875 -28.24958 -27.02346 -24.48773 -23.25471 -22.84567 -21.00115 -19.49165 -18.92857 -18.11487 -17.57983 -17.26155 -16.99016 -16.22430 -15.88070 -15.65128 -15.11893 -14.81632 -14.65383 -14.33331 -13.56633 -13.50846 -12.97219 -12.84545 -12.48839 -12.27986 -12.17427 -12.01546 -11.60884 -11.53190 -11.45889 -11.20498 -10.72603 -10.58678 -10.44710 -9.43350 -8.42269 -6.17473 1.19534 1.32531 1.46374 1.50430 1.82319 1.88439 2.42765 2.47858 2.94308 3.01848 3.23004 3.59021 3.83744 4.02879 4.06860 4.17130 4.20691 4.31070 4.33288 4.42158 4.52536 4.78070 4.85168 4.89332 5.00603 5.02942 5.24464 5.45839 5.68529 5.82555 6.04164 6.59570 6.71007 6.85727 7.31992 7.81395 8.64871 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.006985 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.795292 B = 4007.842657 C = 4693.912332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.241 4.241 3 C 0.163 3.837 4 O -0.395 6.395 5 C 0.086 3.914 6 C -0.118 4.118 7 C 0.442 3.558 8 O -0.588 6.588 9 N -0.448 5.448 10 C -0.340 4.340 11 H 0.074 0.926 12 C 0.039 3.961 13 N -0.913 5.913 14 Si 0.971 3.029 15 H -0.268 1.268 16 H -0.315 1.315 17 H -0.269 1.269 18 C 0.040 3.960 19 C -0.168 4.168 20 C -0.184 4.184 21 H 0.259 0.741 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.120 0.880 27 H 0.107 0.893 28 H 0.272 0.728 29 H 0.155 0.845 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -0.328 -0.173 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.241 4.241 3 C 0.088 3.912 4 O -0.315 6.315 5 C 0.010 3.990 6 C -0.158 4.158 7 C 0.235 3.765 8 O -0.475 6.475 9 N -0.168 5.168 10 C -0.467 4.467 11 H 0.091 0.909 12 C -0.165 4.165 13 N -0.551 5.551 14 Si 0.803 3.197 15 H -0.196 1.196 16 H -0.246 1.246 17 H -0.194 1.194 18 C -0.064 4.064 19 C -0.205 4.205 20 C -0.223 4.223 21 H 0.275 0.725 22 H 0.104 0.896 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.415 -0.343 -0.541 18.426 hybrid contribution 0.722 -0.608 -0.704 1.178 sum -17.692 -0.950 -1.245 17.761 Atomic orbital electron populations 1.25875 0.96675 0.99045 0.95533 1.22968 0.94619 1.02439 1.04041 1.19229 0.85102 1.02752 0.84112 1.87810 1.21361 1.95737 1.26632 1.22024 0.79476 1.01232 0.96300 1.21329 0.90523 1.06490 0.97485 1.20978 0.91134 0.80960 0.83473 1.90486 1.65706 1.54063 1.37195 1.43311 1.04965 1.64422 1.04057 1.18722 0.80266 1.26415 1.21263 0.90864 1.25983 0.95039 0.99015 0.96455 1.69819 1.08449 1.39332 1.37459 0.85387 0.77348 0.76159 0.80854 1.19555 1.24591 1.19383 1.22301 0.97040 1.03870 0.83170 1.23157 1.00119 1.00846 0.96405 1.23318 1.03509 0.91779 1.03659 0.72513 0.89609 0.89974 0.92389 0.93605 0.86230 0.87470 0.91876 0.82802 0.90675 0.85225 0.84951 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 19.25 74.32 1.43 -1.31 16 2 C -0.24 -5.60 13.73 31.13 0.43 -5.18 16 3 C 0.16 3.93 6.41 70.18 0.45 4.38 16 4 O -0.40 -11.60 10.30 -148.98 -1.53 -13.13 16 5 C 0.09 2.80 5.23 71.98 0.38 3.17 16 6 C -0.12 -3.93 4.70 29.85 0.14 -3.79 16 7 C 0.44 20.29 5.88 87.66 0.52 20.81 16 8 O -0.59 -32.04 10.82 -3.09 -0.03 -32.08 16 9 N -0.45 -20.95 2.56 -613.13 -1.57 -22.52 16 10 C -0.34 -19.33 8.77 84.04 0.74 -18.59 16 11 H 0.07 4.43 6.96 -2.91 -0.02 4.41 16 12 C 0.04 2.34 4.90 84.93 0.42 2.76 16 13 N -0.91 -57.99 13.96 21.67 0.30 -57.68 16 14 Si 0.97 52.06 24.53 68.60 1.68 53.74 16 15 H -0.27 -15.02 6.10 99.48 0.61 -14.41 16 16 H -0.32 -16.60 7.11 99.48 0.71 -15.89 16 17 H -0.27 -13.46 7.11 99.48 0.71 -12.76 16 18 C 0.04 1.38 5.85 44.99 0.26 1.64 16 19 C -0.17 -5.32 9.79 30.59 0.30 -5.02 16 20 C -0.18 -5.67 10.37 30.60 0.32 -5.35 16 21 H 0.26 2.03 7.80 -4.42 -0.03 2.00 16 22 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 25 H 0.05 1.58 8.10 -2.38 -0.02 1.56 16 26 H 0.12 3.29 7.57 -2.39 -0.02 3.27 16 27 H 0.11 3.20 8.11 -2.39 -0.02 3.18 16 28 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 29 H 0.15 3.98 6.99 -2.39 -0.02 3.97 16 30 H 0.07 2.95 6.49 -2.39 -0.02 2.94 16 31 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -75.71 286.50 5.21 -70.50 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.99 Total: 7.65 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.37 Total: -6.48 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.27 Total: -80.20 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.57 Total: -45.21 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 1.68 Total: 53.74 kcal Total: -75.71 5.21 -70.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755645573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.388 kcal (2) G-P(sol) polarization free energy of solvation -75.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds