Wall clock time and date at job start Sun Mar 29 2020 22:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53782 * 113.61970 * 2 1 4 4 C 1.53781 * 87.08011 * 220.01916 * 3 2 1 5 5 C 1.47206 * 113.61179 * 139.97922 * 4 3 2 6 6 N 4.46775 * 120.46865 * 311.24903 * 2 1 3 7 7 C 1.50697 * 113.61440 * 270.79380 * 4 3 2 8 8 O 1.20827 * 120.00114 * 358.47834 * 7 4 3 9 9 O 1.34223 * 120.00042 * 178.47185 * 7 4 3 10 10 C 1.45205 * 116.99936 * 180.02562 * 9 7 4 11 11 C 1.53006 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47313 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99804 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00160 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00006 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00271 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46906 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47514 * 119.99969 * 16 14 12 19 19 H 1.48495 * 109.47177 * 240.00534 * 16 14 12 20 20 C 1.53781 * 87.08387 * 25.43185 * 4 3 2 21 21 H 1.09000 * 109.47239 * 59.99793 * 1 2 3 22 22 H 1.08996 * 109.47266 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 300.00488 * 1 2 3 24 24 H 1.09005 * 112.90559 * 131.25215 * 2 1 3 25 25 H 1.09000 * 113.61473 * 105.46945 * 3 2 1 26 26 H 1.09003 * 113.61070 * 334.56525 * 3 2 1 27 27 H 1.09007 * 109.46874 * 299.99754 * 10 9 7 28 28 H 1.08993 * 109.47602 * 60.00116 * 10 9 7 29 29 H 1.08992 * 109.46867 * 300.00100 * 11 10 9 30 30 H 1.09003 * 109.46911 * 59.99440 * 11 10 9 31 31 H 0.97000 * 120.00674 * 179.97438 * 15 14 12 32 32 H 1.08993 * 113.61733 * 89.11687 * 20 4 3 33 33 H 1.08997 * 113.61112 * 220.01923 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 3.1924 0.8660 -0.9876 5 6 3.5327 1.8103 -2.0643 6 7 3.7954 2.5389 -2.8952 7 6 4.4082 0.2799 -0.3173 8 8 4.5002 0.2951 0.8874 9 8 5.3888 -0.2591 -1.0585 10 6 6.5297 -0.8054 -0.3455 11 6 7.5361 -1.3704 -1.3500 12 6 8.7205 -1.9368 -0.6101 13 1 8.7524 -1.8973 0.4688 14 6 9.7632 -2.5053 -1.3103 15 7 9.7245 -2.5528 -2.6240 16 14 11.2316 -3.2067 -0.3932 17 1 11.0332 -3.0300 1.0679 18 1 11.3640 -4.6530 -0.7029 19 1 12.4648 -2.4952 -0.8153 20 6 2.1460 -0.1839 -1.3970 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.9542 -0.6621 0.7549 25 1 2.5651 1.7023 0.9625 26 1 1.4946 2.1704 -0.4290 27 1 7.0040 -0.0172 0.2393 28 1 6.1952 -1.6007 0.3205 29 1 7.0620 -2.1583 -1.9351 30 1 7.8706 -0.5747 -2.0158 31 1 10.4583 -2.9525 -3.1167 32 1 1.4945 0.1419 -2.2078 33 1 2.5649 -1.1765 -1.5622 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767430346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:06 Heat of formation + Delta-G solvation = -52.617669 kcal Electronic energy + Delta-G solvation = -16248.101677 eV Core-core repulsion = 13467.503040 eV Total energy + Delta-G solvation = -2780.598637 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18057 -38.78159 -36.35337 -35.95553 -33.39786 -30.99764 -30.16152 -26.22028 -25.95841 -24.67089 -22.23419 -20.91648 -19.62216 -18.65898 -16.84818 -16.36352 -16.10494 -15.85393 -14.91024 -14.50086 -14.37995 -13.74463 -13.44498 -13.25465 -13.16182 -12.78790 -12.62871 -12.39102 -12.30649 -11.45309 -11.35280 -11.26932 -11.08815 -10.89797 -10.82184 -10.72882 -10.59789 -10.33171 -9.74908 -9.68488 -9.32363 -8.47762 -6.13026 -4.18012 2.07277 2.48840 2.55047 3.05192 3.26027 3.33650 3.38148 3.64870 4.09075 4.15950 4.31902 4.36184 4.71388 5.04408 5.16352 5.23705 5.29307 5.32739 5.47826 5.53049 5.67400 5.76350 5.90306 5.95954 6.00185 6.12173 6.55245 6.77734 7.37511 7.50393 7.57210 7.80380 7.99540 8.19279 8.87715 9.46815 10.98461 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039636 B = 0.004782 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.260500 B = 5853.571420 C = 6155.922168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.103 4.103 4 C 0.007 3.993 5 C 0.224 3.776 6 N -0.407 5.407 7 C 0.486 3.514 8 O -0.494 6.494 9 O -0.348 6.348 10 C 0.074 3.926 11 C 0.023 3.977 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.106 4.106 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.105 0.895 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.956 4.349 4.679 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.141 4.141 4 C 0.002 3.998 5 C -0.095 4.095 6 N -0.082 5.082 7 C 0.326 3.674 8 O -0.382 6.382 9 O -0.263 6.263 10 C 0.002 3.998 11 C -0.014 4.014 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.145 4.145 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.357 5.378 3.615 18.527 hybrid contribution 1.027 -0.670 0.723 1.424 sum -16.329 4.708 4.338 17.539 Atomic orbital electron populations 1.21698 0.93673 1.02263 1.02123 1.22570 0.96590 0.96894 0.97078 1.23127 0.93969 0.98126 0.98904 1.19172 0.93037 0.95111 0.92440 1.28003 0.93935 0.93757 0.93799 1.81215 1.06777 1.10195 1.09974 1.22052 0.83347 0.76060 0.85904 1.90659 1.78274 1.54272 1.15007 1.86554 1.29565 1.67998 1.42225 1.23780 0.82322 0.96913 0.96755 1.19195 0.91381 0.96706 0.94089 1.20993 1.02851 1.39331 0.93348 0.92121 1.24985 0.98504 0.95748 0.94894 1.69980 1.32469 1.44371 1.05901 0.86411 0.82165 0.78734 0.79980 1.19549 1.20797 1.20820 1.23184 0.94374 0.98160 0.98767 0.92344 0.92102 0.92017 0.87749 0.88301 0.88004 0.92015 0.91795 0.95214 0.95354 0.92709 0.87657 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.71 37.16 0.36 -0.47 16 2 C -0.11 -0.91 4.03 -89.81 -0.36 -1.28 16 3 C -0.10 -0.92 6.55 -25.92 -0.17 -1.09 16 4 C 0.01 0.09 1.23 -157.63 -0.19 -0.11 16 5 C 0.22 3.20 14.36 -20.76 -0.30 2.90 16 6 N -0.41 -6.71 18.54 42.15 0.78 -5.93 16 7 C 0.49 7.92 6.72 36.00 0.24 8.16 16 8 O -0.49 -8.69 15.58 -18.75 -0.29 -8.99 16 9 O -0.35 -6.78 10.06 -39.24 -0.39 -7.17 16 10 C 0.07 1.61 5.41 37.16 0.20 1.81 16 11 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 12 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.32 13.28 55.43 0.74 -25.59 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.11 -0.97 6.74 -25.92 -0.17 -1.14 16 21 H 0.06 0.31 7.94 -51.93 -0.41 -0.11 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.10 0.95 7.42 -51.93 -0.39 0.57 16 26 H 0.10 0.71 8.04 -51.93 -0.42 0.29 16 27 H 0.06 1.32 8.13 -51.92 -0.42 0.90 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.11 0.76 7.91 -51.93 -0.41 0.35 16 33 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -31.45 295.42 -5.24 -36.69 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -4.55 Total: -5.57 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.96 Total: -4.13 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 1.52 Total: -31.51 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.69 Total: -16.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.45 -5.24 -36.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767430346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.927 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds