Wall clock time and date at job start Sun Mar 29 2020 21:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37095 * 120.00094 * 2 1 4 4 H 1.07999 * 119.99828 * 203.80446 * 3 2 1 5 5 C 1.38957 * 119.99935 * 23.80544 * 3 2 1 6 6 N 1.31410 * 119.99599 * 14.23376 * 5 3 2 7 7 Si 1.86799 * 119.99749 * 194.23211 * 5 3 2 8 8 H 1.48493 * 109.47158 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46851 * 120.00403 * 7 5 3 10 10 H 1.48500 * 109.46782 * 239.99768 * 7 5 3 11 11 C 1.34776 * 119.99551 * 179.97438 * 2 1 3 12 12 O 1.21299 * 119.99339 * 179.72776 * 11 2 1 13 13 C 1.50693 * 120.00475 * 0.02562 * 11 2 1 14 14 H 1.09003 * 109.47308 * 344.71811 * 13 11 2 15 15 F 1.39899 * 109.47352 * 104.72201 * 13 11 2 16 16 C 1.50701 * 109.47168 * 224.71980 * 13 11 2 17 17 C 1.38236 * 119.99881 * 294.72656 * 16 13 11 18 18 C 1.38236 * 119.99540 * 179.80719 * 17 16 13 19 19 C 1.38234 * 120.00384 * 0.40044 * 18 17 16 20 20 C 1.38240 * 119.99905 * 359.85147 * 19 18 17 21 21 C 1.38233 * 120.00023 * 359.96130 * 20 19 18 22 22 H 1.08994 * 109.47426 * 264.95175 * 1 2 3 23 23 H 1.09000 * 109.46737 * 24.95254 * 1 2 3 24 24 H 1.09006 * 109.46586 * 144.95017 * 1 2 3 25 25 H 0.97000 * 119.99525 * 179.97438 * 6 5 3 26 26 H 1.07990 * 120.00545 * 359.97438 * 17 16 13 27 27 H 1.08005 * 119.99927 * 180.22917 * 18 17 16 28 28 H 1.08002 * 120.00345 * 179.83211 * 19 18 17 29 29 H 1.08000 * 120.00339 * 179.97438 * 20 19 18 30 30 H 1.08003 * 120.00410 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1616 1.2270 -0.3775 5 6 1.5444 2.3395 0.4857 6 7 0.4410 2.2527 1.1940 7 14 2.2983 4.0116 0.1318 8 1 3.5290 3.8377 -0.6807 9 1 1.3243 4.8449 -0.6179 10 1 2.6403 4.6813 1.4124 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 -0.0045 13 6 1.3854 -2.4723 0.0005 14 1 0.3451 -2.2913 0.2709 15 9 1.4430 -3.0441 -1.2750 16 6 2.0082 -3.4119 1.0007 17 6 3.2954 -3.8760 0.8046 18 6 3.8681 -4.7347 1.7242 19 6 3.1505 -5.1359 2.8355 20 6 1.8613 -4.6759 3.0289 21 6 1.2900 -3.8141 2.1114 22 1 -0.3634 -0.0904 1.0236 23 1 -0.3633 0.9318 -0.4335 24 1 -0.3633 -0.8414 -0.5902 25 1 0.0181 3.0570 1.5334 26 1 3.8547 -3.5656 -0.0655 27 1 4.8752 -5.0944 1.5729 28 1 3.5969 -5.8090 3.5525 29 1 1.3005 -4.9896 3.8969 30 1 0.2827 -3.4550 2.2622 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769434196.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:02 Heat of formation + Delta-G solvation = -47.129242 kcal Electronic energy + Delta-G solvation = -16609.223388 eV Core-core repulsion = 13705.402443 eV Total energy + Delta-G solvation = -2903.820946 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.29110 -39.05065 -38.03448 -34.80292 -32.11520 -31.53253 -30.60894 -27.34494 -26.07032 -24.26329 -22.33307 -21.52424 -19.16170 -17.10393 -16.86679 -16.55403 -15.61512 -15.46296 -14.88448 -14.28481 -14.07981 -13.85277 -13.44818 -13.19215 -13.10434 -12.40851 -12.02240 -11.78329 -11.60317 -11.36997 -11.29224 -10.97656 -10.80830 -10.55888 -10.37033 -10.25476 -9.10409 -8.79595 -8.59100 -8.27178 -7.77765 -6.43126 -3.98045 1.53171 1.69974 3.09379 3.21549 3.28720 3.64330 3.98393 4.10451 4.54466 4.87474 5.04558 5.05195 5.19389 5.33020 5.37299 5.54083 5.71989 5.85370 6.00344 6.14653 6.21710 6.36092 6.65964 6.71643 6.76019 6.90682 7.06665 7.24267 7.48501 8.00342 8.36170 9.06089 9.27557 9.81444 10.61673 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.035279 B = 0.006792 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.473895 B = 4121.286174 C = 4168.162847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.432 5.432 3 C -0.308 4.308 4 H 0.101 0.899 5 C 0.032 3.968 6 N -0.876 5.876 7 Si 0.928 3.072 8 H -0.267 1.267 9 H -0.279 1.279 10 H -0.280 1.280 11 C 0.424 3.576 12 O -0.569 6.569 13 C 0.122 3.878 14 H 0.099 0.901 15 F -0.198 7.198 16 C -0.106 4.106 17 C -0.065 4.065 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.131 4.131 21 C -0.100 4.100 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.269 0.731 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 -9.696 1.859 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.150 5.150 3 C -0.435 4.435 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.515 5.515 7 Si 0.755 3.245 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.210 3.790 12 O -0.452 6.452 13 C 0.083 3.917 14 H 0.116 0.884 15 F -0.179 7.179 16 C -0.107 4.107 17 C -0.083 4.083 18 C -0.148 4.148 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.118 4.118 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.221 -9.537 1.905 9.802 hybrid contribution 0.056 0.918 -0.039 0.920 sum -1.165 -8.619 1.866 8.896 Atomic orbital electron populations 1.21620 0.81116 1.00637 1.00734 1.43624 1.05593 1.04622 1.61151 1.19749 1.00562 0.83618 1.39617 0.88085 1.25390 0.96591 1.00324 0.94863 1.70004 1.19585 1.29786 1.32138 0.85828 0.79239 0.81093 0.78378 1.19081 1.20484 1.20616 1.20071 0.88415 0.84521 0.86034 1.90522 1.13406 1.86279 1.55041 1.20485 1.01170 0.91593 0.78494 0.88368 1.92823 1.97882 1.86084 1.41130 1.19887 0.95725 0.98478 0.96622 1.21121 0.93856 0.94028 0.99346 1.21132 0.99878 0.98788 0.94982 1.21136 0.94796 0.99998 0.97586 1.21007 0.95787 0.98836 0.99275 1.21000 0.99778 0.97218 0.93828 0.92625 0.90041 0.95282 0.92062 0.85065 0.86098 0.86348 0.86094 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.27 8.02 59.85 0.48 2.75 16 2 N -0.43 -11.21 3.01 -122.19 -0.37 -11.57 16 3 C -0.31 -8.59 9.25 -14.93 -0.14 -8.73 16 4 H 0.10 2.96 7.44 -52.49 -0.39 2.57 16 5 C 0.03 0.85 5.01 -17.47 -0.09 0.76 16 6 N -0.88 -23.00 10.89 55.50 0.60 -22.39 16 7 Si 0.93 20.52 29.58 -169.99 -5.03 15.49 16 8 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 C 0.42 10.68 6.96 -10.99 -0.08 10.60 16 12 O -0.57 -16.00 14.92 5.54 0.08 -15.91 16 13 C 0.12 2.48 3.40 -29.04 -0.10 2.38 16 14 H 0.10 1.75 5.72 -51.93 -0.30 1.45 16 15 F -0.20 -4.07 16.91 2.25 0.04 -4.03 16 16 C -0.11 -2.00 5.00 -104.62 -0.52 -2.52 16 17 C -0.07 -1.21 8.56 -39.58 -0.34 -1.55 16 18 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 19 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 20 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 21 C -0.10 -1.59 9.67 -39.58 -0.38 -1.98 16 22 H 0.06 1.22 7.88 -51.93 -0.41 0.82 16 23 H 0.08 1.89 6.74 -51.93 -0.35 1.54 16 24 H 0.03 0.54 6.55 -51.93 -0.34 0.20 16 25 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 26 H 0.13 2.59 7.43 -52.49 -0.39 2.20 16 27 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.69 7.95 -52.48 -0.42 1.28 16 LS Contribution 264.84 15.07 3.99 3.99 Total: -1.00 -30.99 264.84 -6.04 -37.03 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.00 Total: 2.29 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.36 Total: -4.88 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.24 Total: -33.97 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.08 Total: -15.91 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.99 -6.04 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769434196.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.101 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds