Wall clock time and date at job start Sun Mar 29 2020 21:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37095 * 120.00094 * 2 1 4 4 H 1.07999 * 119.99828 * 203.80446 * 3 2 1 5 5 C 1.38957 * 119.99935 * 23.80544 * 3 2 1 6 6 N 1.31410 * 119.99599 * 14.23376 * 5 3 2 7 7 Si 1.86799 * 119.99749 * 194.23211 * 5 3 2 8 8 H 1.48493 * 109.47158 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46851 * 120.00403 * 7 5 3 10 10 H 1.48500 * 109.46782 * 239.99768 * 7 5 3 11 11 C 1.34776 * 119.99551 * 179.97438 * 2 1 3 12 12 O 1.21299 * 119.99339 * 179.72776 * 11 2 1 13 13 C 1.50693 * 120.00475 * 0.02562 * 11 2 1 14 14 H 1.09003 * 109.47308 * 344.71811 * 13 11 2 15 15 F 1.39899 * 109.47352 * 104.72201 * 13 11 2 16 16 C 1.50701 * 109.47168 * 224.71980 * 13 11 2 17 17 C 1.38236 * 119.99881 * 294.72656 * 16 13 11 18 18 C 1.38236 * 119.99540 * 179.80719 * 17 16 13 19 19 C 1.38234 * 120.00384 * 0.40044 * 18 17 16 20 20 C 1.38240 * 119.99905 * 359.85147 * 19 18 17 21 21 C 1.38233 * 120.00023 * 359.96130 * 20 19 18 22 22 H 1.08994 * 109.47426 * 264.95175 * 1 2 3 23 23 H 1.09000 * 109.46737 * 24.95254 * 1 2 3 24 24 H 1.09006 * 109.46586 * 144.95017 * 1 2 3 25 25 H 0.97000 * 119.99525 * 179.97438 * 6 5 3 26 26 H 1.07990 * 120.00545 * 359.97438 * 17 16 13 27 27 H 1.08005 * 119.99927 * 180.22917 * 18 17 16 28 28 H 1.08002 * 120.00345 * 179.83211 * 19 18 17 29 29 H 1.08000 * 120.00339 * 179.97438 * 20 19 18 30 30 H 1.08003 * 120.00410 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1616 1.2270 -0.3775 5 6 1.5444 2.3395 0.4857 6 7 0.4410 2.2527 1.1940 7 14 2.2983 4.0116 0.1318 8 1 3.5290 3.8377 -0.6807 9 1 1.3243 4.8449 -0.6179 10 1 2.6403 4.6813 1.4124 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 -0.0045 13 6 1.3854 -2.4723 0.0005 14 1 0.3451 -2.2913 0.2709 15 9 1.4430 -3.0441 -1.2750 16 6 2.0082 -3.4119 1.0007 17 6 3.2954 -3.8760 0.8046 18 6 3.8681 -4.7347 1.7242 19 6 3.1505 -5.1359 2.8355 20 6 1.8613 -4.6759 3.0289 21 6 1.2900 -3.8141 2.1114 22 1 -0.3634 -0.0904 1.0236 23 1 -0.3633 0.9318 -0.4335 24 1 -0.3633 -0.8414 -0.5902 25 1 0.0181 3.0570 1.5334 26 1 3.8547 -3.5656 -0.0655 27 1 4.8752 -5.0944 1.5729 28 1 3.5969 -5.8090 3.5525 29 1 1.3005 -4.9896 3.8969 30 1 0.2827 -3.4550 2.2622 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769434196.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:02 Heat of formation + Delta-G solvation = -65.593259 kcal Electronic energy + Delta-G solvation = -16610.024048 eV Core-core repulsion = 13705.402443 eV Total energy + Delta-G solvation = -2904.621605 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.92136 -40.60187 -39.63875 -36.80270 -33.91616 -33.11333 -31.79719 -29.05554 -27.83669 -26.13572 -23.53869 -22.92502 -20.90852 -19.07783 -18.51756 -18.06616 -17.24789 -17.00582 -16.61511 -15.92878 -15.62623 -15.27357 -15.15155 -15.00384 -14.28013 -13.83459 -13.67071 -13.45631 -13.34503 -13.19924 -12.96084 -12.67316 -12.47822 -12.13900 -11.99644 -11.77686 -11.07515 -10.46566 -9.81693 -9.79807 -9.74833 -8.43911 -6.08617 0.29919 0.50120 1.31309 1.39848 1.53724 1.77956 2.20231 2.69291 2.89837 3.00182 3.41723 3.61311 3.72357 4.07101 4.16851 4.27971 4.34930 4.49184 4.61755 4.72853 4.91210 4.99316 5.15045 5.24375 5.37841 5.50788 5.57938 5.63510 5.97125 6.08581 6.35037 7.03601 7.28172 7.83310 8.59504 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.035279 B = 0.006792 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.473895 B = 4121.286174 C = 4168.162847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.445 5.445 3 C -0.350 4.350 4 H 0.072 0.928 5 C 0.004 3.996 6 N -0.887 5.887 7 Si 0.992 3.008 8 H -0.275 1.275 9 H -0.261 1.261 10 H -0.273 1.273 11 C 0.410 3.590 12 O -0.612 6.612 13 C 0.133 3.867 14 H 0.127 0.873 15 F -0.203 7.203 16 C -0.139 4.139 17 C -0.096 4.096 18 C -0.135 4.135 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.107 4.107 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.278 0.722 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -10.380 3.544 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.163 5.163 3 C -0.478 4.478 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.524 5.524 7 Si 0.815 3.185 8 H -0.200 1.200 9 H -0.186 1.186 10 H -0.198 1.198 11 C 0.197 3.803 12 O -0.499 6.499 13 C 0.094 3.906 14 H 0.144 0.856 15 F -0.184 7.184 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.153 4.153 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.125 4.125 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.160 0.840 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.382 -10.231 3.592 11.102 hybrid contribution 0.414 1.084 -0.502 1.264 sum -1.967 -9.147 3.091 9.854 Atomic orbital electron populations 1.21640 0.79025 1.01459 1.01283 1.43911 1.07034 1.04457 1.60908 1.19678 1.00382 0.85587 1.42163 0.91054 1.26133 0.96908 1.03013 0.93880 1.70044 1.19812 1.31172 1.31378 0.84903 0.78418 0.76777 0.78391 1.19985 1.18563 1.19799 1.20984 0.88409 0.86044 0.84860 1.90475 1.15492 1.87301 1.56586 1.20419 1.01895 0.89403 0.78884 0.85596 1.92807 1.97944 1.85906 1.41737 1.19948 0.96480 0.99714 0.97859 1.21086 0.94323 0.96226 0.99850 1.21424 1.01041 0.97949 0.94878 1.21630 0.94576 0.99323 0.97068 1.21509 0.96037 0.97217 0.99554 1.21316 1.00668 0.97486 0.93023 0.92561 0.91388 0.91721 0.91196 0.88105 0.84012 0.82350 0.82221 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.76 8.02 127.77 1.02 5.78 16 2 N -0.45 -23.66 3.01 -658.87 -1.98 -25.64 16 3 C -0.35 -20.23 9.25 84.04 0.78 -19.45 16 4 H 0.07 4.43 7.44 -2.91 -0.02 4.41 16 5 C 0.00 0.21 5.01 84.93 0.43 0.63 16 6 N -0.89 -45.97 10.89 21.67 0.24 -45.73 16 7 Si 0.99 42.02 29.58 68.60 2.03 44.05 16 8 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 C 0.41 21.35 6.96 87.65 0.61 21.96 16 12 O -0.61 -36.40 14.92 -3.09 -0.05 -36.44 16 13 C 0.13 5.44 3.40 29.10 0.10 5.54 16 14 H 0.13 4.32 5.72 -2.39 -0.01 4.31 16 15 F -0.20 -8.49 16.91 44.97 0.76 -7.73 16 16 C -0.14 -5.23 5.00 -19.86 -0.10 -5.33 16 17 C -0.10 -3.66 8.56 22.27 0.19 -3.47 16 18 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 19 C -0.11 -2.56 10.05 22.27 0.22 -2.34 16 20 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 21 C -0.11 -3.17 9.67 22.27 0.22 -2.96 16 22 H 0.06 2.43 7.88 -2.39 -0.02 2.41 16 23 H 0.07 3.13 6.74 -2.39 -0.02 3.12 16 24 H 0.06 2.32 6.55 -2.38 -0.02 2.31 16 25 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 26 H 0.10 4.30 7.43 -2.92 -0.02 4.28 16 27 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 30 H 0.14 3.53 7.95 -2.91 -0.02 3.51 16 Total: -1.00 -69.70 264.84 6.06 -63.64 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.15 Total: 14.00 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 3.91 Total: -6.14 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.75 Total: -71.37 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.05 Total: -36.44 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.76 Total: -7.73 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.70 6.06 -63.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769434196.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.956 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds