Wall clock time and date at job start Sun Mar 29 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46816 * 2 1 4 4 H 1.09002 * 109.46964 * 55.00251 * 3 2 1 5 5 C 1.50701 * 109.46881 * 175.00523 * 3 2 1 6 6 H 1.07995 * 120.00049 * 120.00019 * 5 3 2 7 7 C 1.37886 * 119.99898 * 299.99691 * 5 3 2 8 8 N 1.31516 * 119.99708 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47083 * 89.99998 * 9 7 5 11 11 H 1.48499 * 109.47452 * 210.00171 * 9 7 5 12 12 H 1.48503 * 109.46902 * 330.00517 * 9 7 5 13 13 O 1.45201 * 109.47167 * 295.00156 * 3 2 1 14 14 C 1.34788 * 116.99674 * 90.00245 * 13 3 2 15 15 O 1.21544 * 120.00379 * 0.02562 * 14 13 3 16 16 C 1.47113 * 119.99611 * 179.97438 * 14 13 3 17 17 C 1.37841 * 127.02291 * 0.03032 * 16 14 13 18 18 N 1.34634 * 108.20241 * 179.97438 * 17 16 14 19 19 H 0.96999 * 124.80755 * 179.97438 * 18 17 16 20 20 C 1.36422 * 110.38074 * 359.97438 * 18 17 16 21 21 C 1.34430 * 109.08855 * 359.97438 * 20 18 17 22 22 C 1.50707 * 126.81296 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.47008 * 299.99696 * 1 2 3 24 24 H 1.08995 * 109.47265 * 59.99850 * 1 2 3 25 25 H 1.08998 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46780 * 240.00171 * 2 1 3 27 27 H 1.08995 * 109.47265 * 120.00150 * 2 1 3 28 28 H 0.96999 * 119.99935 * 179.97438 * 8 7 5 29 29 H 1.07997 * 125.90251 * 0.26132 * 17 16 14 30 30 H 1.08000 * 125.45427 * 180.02562 * 20 18 17 31 31 H 1.08997 * 109.47062 * 90.02316 * 22 21 20 32 32 H 1.08997 * 109.47006 * 210.02838 * 22 21 20 33 33 H 1.08997 * 109.47095 * 330.02393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1434 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8800 1.3810 10 1 6.4429 2.1129 2.0834 11 1 6.4392 -0.3110 2.1543 12 1 6.6130 0.8395 0.0267 13 8 1.6558 2.0917 -1.2407 14 6 0.4677 2.7281 -1.2559 15 8 -0.2279 2.7404 -0.2593 16 6 0.0135 3.4086 -2.4785 17 6 0.6809 3.4860 -3.6821 18 7 -0.0774 4.1961 -4.5385 19 1 0.1643 4.3973 -5.4561 20 6 -1.2339 4.5923 -3.9330 21 6 -1.2436 4.1419 -2.6664 22 6 -2.3292 4.3505 -1.6421 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8295 -0.0618 2.9494 29 1 1.6435 3.0484 -3.9017 30 1 -2.0166 5.1739 -4.3971 31 1 -3.0504 3.5357 -1.7060 32 1 -1.8893 4.3690 -0.6451 33 1 -2.8331 5.2976 -1.8345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:44 Heat of formation + Delta-G solvation = -56.595848 kcal Electronic energy + Delta-G solvation = -16884.309951 eV Core-core repulsion = 14103.538807 eV Total energy + Delta-G solvation = -2780.771143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90188 -38.90606 -35.45976 -33.35597 -32.27608 -31.28144 -29.67963 -27.11457 -26.39335 -23.61968 -22.55224 -20.32314 -19.41188 -18.65411 -18.04329 -16.49337 -16.20623 -15.09526 -14.89823 -14.25395 -14.10453 -13.59091 -13.17146 -12.80268 -12.69679 -12.49659 -12.17413 -11.88370 -11.36881 -11.21305 -11.16451 -11.06464 -10.86694 -10.55223 -10.20444 -9.66585 -9.39806 -9.21327 -8.67481 -8.45772 -8.35020 -8.12011 -6.11127 -4.17535 2.01755 2.53488 3.28065 3.28912 3.33936 3.37820 4.00731 4.04797 4.43109 5.08367 5.20669 5.21756 5.37275 5.58243 6.00814 6.04720 6.07975 6.32853 6.37936 6.44917 6.45856 6.60645 6.95136 7.01147 7.04788 7.12901 7.30396 7.43525 7.53138 7.70872 7.85691 8.10157 8.27810 8.80556 9.10101 9.47719 10.95742 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.006518 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.179395 B = 4294.450257 C = 4733.309941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.047 0.953 5 C -0.519 4.519 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.358 6.358 14 C 0.525 3.475 15 O -0.521 6.521 16 C -0.209 4.209 17 C 0.067 3.933 18 N -0.553 5.553 19 H 0.415 0.585 20 C -0.037 4.037 21 C -0.108 4.108 22 C -0.083 4.083 23 H 0.053 0.947 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.107 0.893 28 H 0.265 0.735 29 H 0.182 0.818 30 H 0.166 0.834 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 6.181 -12.242 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.557 4.557 6 H 0.085 0.915 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.275 6.275 14 C 0.370 3.630 15 O -0.412 6.412 16 C -0.218 4.218 17 C -0.069 4.069 18 N -0.147 5.147 19 H 0.252 0.748 20 C -0.164 4.164 21 C -0.114 4.114 22 C -0.141 4.141 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.075 0.925 29 H 0.199 0.801 30 H 0.183 0.817 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.186 6.096 -11.862 15.150 hybrid contribution 1.050 -0.031 -0.227 1.075 sum -6.136 6.064 -12.089 14.852 Atomic orbital electron populations 1.21852 0.98334 0.98776 1.00971 1.22000 0.92700 0.99455 1.03101 1.20597 0.94728 0.88702 0.78975 0.93567 1.21058 0.89868 1.38636 1.06099 0.91464 1.24881 0.99065 0.94901 0.95154 1.69900 1.35257 1.37983 1.09480 0.86313 0.84152 0.77632 0.78255 1.20471 1.21005 1.19682 1.86520 1.34227 1.62926 1.43817 1.20004 0.80391 0.76106 0.86475 1.90734 1.55793 1.59397 1.35321 1.20052 0.97950 1.10475 0.93302 1.22456 0.97575 0.97322 0.89545 1.41491 1.16609 1.43106 1.13527 0.74840 1.21433 0.91971 1.08777 0.94219 1.20546 0.95559 1.00796 0.94514 1.20202 0.95292 1.00333 0.98246 0.92831 0.94700 0.95071 0.94172 0.87518 0.92485 0.80118 0.81654 0.91887 0.90132 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.56 37.16 0.32 -2.96 16 2 C -0.13 -3.46 5.49 -26.73 -0.15 -3.61 16 3 C 0.22 6.11 2.25 -27.88 -0.06 6.05 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.54 11.29 55.43 0.63 -24.92 16 9 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.36 -8.89 9.66 -40.73 -0.39 -9.28 16 14 C 0.53 11.97 6.40 34.33 0.22 12.19 16 15 O -0.52 -12.89 12.52 -19.30 -0.24 -13.13 16 16 C -0.21 -3.82 6.32 -103.01 -0.65 -4.47 16 17 C 0.07 0.95 11.79 -16.47 -0.19 0.75 16 18 N -0.55 -5.76 5.89 -12.61 -0.07 -5.84 16 19 H 0.42 2.57 8.96 -40.82 -0.37 2.20 16 20 C -0.04 -0.43 11.80 -16.86 -0.20 -0.63 16 21 C -0.11 -1.67 6.35 -102.53 -0.65 -2.32 16 22 C -0.08 -1.20 9.98 36.01 0.36 -0.84 16 23 H 0.05 1.29 7.79 -51.93 -0.40 0.88 16 24 H 0.03 0.79 6.06 -51.93 -0.31 0.48 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.37 6.86 -51.93 -0.36 1.01 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 280.94 15.07 4.23 4.23 Total: -1.00 -32.82 280.94 -6.48 -39.31 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.20 Total: 2.64 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.41 Total: -9.29 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.55 Total: -30.76 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.63 Total: -22.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.82 -6.48 -39.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.289 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds