Wall clock time and date at job start Sun Mar 29 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46816 * 2 1 4 4 H 1.09002 * 109.46964 * 55.00251 * 3 2 1 5 5 C 1.50701 * 109.46881 * 175.00523 * 3 2 1 6 6 H 1.07995 * 120.00049 * 120.00019 * 5 3 2 7 7 C 1.37886 * 119.99898 * 299.99691 * 5 3 2 8 8 N 1.31516 * 119.99708 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47083 * 89.99998 * 9 7 5 11 11 H 1.48499 * 109.47452 * 210.00171 * 9 7 5 12 12 H 1.48503 * 109.46902 * 330.00517 * 9 7 5 13 13 O 1.45201 * 109.47167 * 295.00156 * 3 2 1 14 14 C 1.34788 * 116.99674 * 90.00245 * 13 3 2 15 15 O 1.21544 * 120.00379 * 0.02562 * 14 13 3 16 16 C 1.47113 * 119.99611 * 179.97438 * 14 13 3 17 17 C 1.37841 * 127.02291 * 0.03032 * 16 14 13 18 18 N 1.34634 * 108.20241 * 179.97438 * 17 16 14 19 19 H 0.96999 * 124.80755 * 179.97438 * 18 17 16 20 20 C 1.36422 * 110.38074 * 359.97438 * 18 17 16 21 21 C 1.34430 * 109.08855 * 359.97438 * 20 18 17 22 22 C 1.50707 * 126.81296 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.47008 * 299.99696 * 1 2 3 24 24 H 1.08995 * 109.47265 * 59.99850 * 1 2 3 25 25 H 1.08998 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46780 * 240.00171 * 2 1 3 27 27 H 1.08995 * 109.47265 * 120.00150 * 2 1 3 28 28 H 0.96999 * 119.99935 * 179.97438 * 8 7 5 29 29 H 1.07997 * 125.90251 * 0.26132 * 17 16 14 30 30 H 1.08000 * 125.45427 * 180.02562 * 20 18 17 31 31 H 1.08997 * 109.47062 * 90.02316 * 22 21 20 32 32 H 1.08997 * 109.47006 * 210.02838 * 22 21 20 33 33 H 1.08997 * 109.47095 * 330.02393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1434 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8800 1.3810 10 1 6.4429 2.1129 2.0834 11 1 6.4392 -0.3110 2.1543 12 1 6.6130 0.8395 0.0267 13 8 1.6558 2.0917 -1.2407 14 6 0.4677 2.7281 -1.2559 15 8 -0.2279 2.7404 -0.2593 16 6 0.0135 3.4086 -2.4785 17 6 0.6809 3.4860 -3.6821 18 7 -0.0774 4.1961 -4.5385 19 1 0.1643 4.3973 -5.4561 20 6 -1.2339 4.5923 -3.9330 21 6 -1.2436 4.1419 -2.6664 22 6 -2.3292 4.3505 -1.6421 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8295 -0.0618 2.9494 29 1 1.6435 3.0484 -3.9017 30 1 -2.0166 5.1739 -4.3971 31 1 -3.0504 3.5357 -1.7060 32 1 -1.8893 4.3690 -0.6451 33 1 -2.8331 5.2976 -1.8345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:44 Heat of formation + Delta-G solvation = -77.452413 kcal Electronic energy + Delta-G solvation = -16885.214359 eV Core-core repulsion = 14103.538807 eV Total energy + Delta-G solvation = -2781.675552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03087 -40.69988 -37.37780 -35.41682 -33.43081 -33.28442 -30.96158 -29.17899 -27.44986 -25.50335 -24.27790 -22.05180 -20.95023 -20.04994 -19.17164 -18.51119 -18.00702 -16.91929 -16.76502 -15.99698 -15.30252 -14.82319 -14.71796 -14.54015 -14.12194 -13.80226 -13.56986 -13.38631 -13.31039 -13.17312 -13.04441 -12.77573 -12.53281 -12.32485 -12.10718 -11.72560 -11.38500 -11.12828 -10.75818 -10.49769 -9.63482 -9.16502 -8.24750 -6.41661 0.65223 1.42177 1.44614 1.49243 1.56139 2.13458 2.39368 2.46350 2.61830 3.04629 4.02392 4.15855 4.32535 4.38705 4.42294 4.46245 4.60490 4.76324 4.89133 4.92155 4.96399 5.09790 5.17772 5.25870 5.29563 5.44676 5.54873 5.70417 5.82210 5.95041 6.03354 6.22652 6.64713 6.72211 7.18080 7.34946 8.82489 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.006518 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.179395 B = 4294.450257 C = 4733.309941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.226 3.774 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.066 0.934 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.261 1.261 13 O -0.364 6.364 14 C 0.516 3.484 15 O -0.555 6.555 16 C -0.266 4.266 17 C 0.087 3.913 18 N -0.525 5.525 19 H 0.442 0.558 20 C -0.001 4.001 21 C -0.146 4.146 22 C -0.079 4.079 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.270 0.730 29 H 0.196 0.804 30 H 0.215 0.785 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 7.000 -15.030 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.185 1.185 13 O -0.281 6.281 14 C 0.364 3.636 15 O -0.449 6.449 16 C -0.275 4.275 17 C -0.052 4.052 18 N -0.121 5.121 19 H 0.283 0.717 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.137 4.137 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.213 0.787 30 H 0.232 0.768 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.973 6.936 -14.705 17.691 hybrid contribution 0.898 -0.209 0.560 1.079 sum -6.075 6.727 -14.145 16.800 Atomic orbital electron populations 1.21683 0.96498 1.00314 0.99943 1.21844 0.94276 0.98212 1.02203 1.20301 0.94466 0.89158 0.78783 0.98136 1.21344 0.90460 1.39821 1.06934 0.91543 1.25845 1.04377 0.93884 0.94325 1.70031 1.37496 1.38029 1.09892 0.85188 0.77534 0.77963 0.78743 1.19883 1.19983 1.18538 1.86500 1.35858 1.63562 1.42225 1.20896 0.79200 0.75539 0.87976 1.90702 1.56357 1.60778 1.37042 1.20062 1.00880 1.13566 0.92972 1.22545 0.97751 0.96322 0.88631 1.41515 1.15511 1.40827 1.14233 0.71704 1.22026 0.92205 1.06150 0.92475 1.20803 0.95177 1.02470 0.96681 1.20139 0.95205 1.02142 0.96183 0.94795 0.94778 0.92037 0.93581 0.89579 0.92075 0.78702 0.76799 0.91984 0.94084 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.56 71.98 0.62 -5.44 16 2 C -0.13 -6.79 5.49 30.60 0.17 -6.63 16 3 C 0.23 13.08 2.25 29.85 0.07 13.14 16 4 H 0.00 0.05 7.16 -2.39 -0.02 0.04 16 5 C -0.55 -32.22 8.90 25.60 0.23 -31.99 16 6 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 7 C 0.02 0.86 5.29 84.66 0.45 1.30 16 8 N -0.92 -54.13 11.29 21.45 0.24 -53.88 16 9 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 13 O -0.36 -18.90 9.66 -56.99 -0.55 -19.45 16 14 C 0.52 24.69 6.40 70.15 0.45 25.14 16 15 O -0.56 -29.48 12.52 19.69 0.25 -29.23 16 16 C -0.27 -9.72 6.32 -18.82 -0.12 -9.84 16 17 C 0.09 2.26 11.79 84.17 0.99 3.25 16 18 N -0.53 -8.65 5.89 -193.82 -1.14 -9.79 16 19 H 0.44 3.05 8.96 -92.71 -0.83 2.22 16 20 C 0.00 -0.02 11.80 83.11 0.98 0.96 16 21 C -0.15 -4.30 6.35 -18.51 -0.12 -4.42 16 22 C -0.08 -2.26 9.98 71.24 0.71 -1.55 16 23 H 0.03 1.71 7.79 -2.38 -0.02 1.69 16 24 H 0.03 1.59 6.06 -2.39 -0.01 1.58 16 25 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 4.95 5.95 -2.39 -0.01 4.94 16 28 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.20 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -76.36 280.94 5.54 -70.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.29 Total: 11.78 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.42 Total: -16.06 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.90 Total: -63.68 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.30 Total: -48.68 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -76.36 5.54 -70.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.630 kcal (2) G-P(sol) polarization free energy of solvation -76.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds