Wall clock time and date at job start Sun Mar 29 2020 22:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.78553 * 2 1 4 4 C 1.41386 * 106.83824 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.83815 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.78768 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47247 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47265 * 240.00128 * 6 5 4 9 9 C 1.50696 * 109.47192 * 120.00257 * 6 5 4 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 6 5 11 11 N 1.34777 * 120.00137 * 180.02562 * 9 6 5 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 6 13 13 C 1.50699 * 109.46928 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99963 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99865 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99749 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00236 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47160 * 89.99730 * 17 15 13 19 19 H 1.48503 * 109.47061 * 209.99752 * 17 15 13 20 20 H 1.48500 * 109.46598 * 329.99398 * 17 15 13 21 21 O 1.34294 * 125.78848 * 180.35297 * 2 1 3 22 22 H 1.09006 * 109.47022 * 89.99736 * 1 2 3 23 23 H 1.08994 * 109.47251 * 209.99666 * 1 2 3 24 24 H 1.09000 * 109.47226 * 330.00209 * 1 2 3 25 25 H 1.07998 * 126.58141 * 0.02562 * 3 2 1 26 26 H 1.07997 * 126.58190 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47624 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47140 * 300.00252 * 8 6 5 29 29 H 1.09002 * 109.47045 * 60.00159 * 8 6 5 30 30 H 0.96999 * 120.00047 * 359.97438 * 11 9 6 31 31 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 32 32 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 33 33 H 0.97001 * 119.99269 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 1 5.6885 -1.0501 -0.0027 8 6 4.7292 -2.5193 -1.2528 9 6 4.7314 -2.5079 1.2269 10 8 3.8266 -2.3884 2.0257 11 7 5.7018 -3.4187 1.4391 12 6 5.6634 -4.2649 2.6345 13 6 6.8527 -5.1905 2.6331 14 1 7.5660 -5.1520 1.8231 15 6 7.0306 -6.0858 3.6664 16 7 8.0683 -6.8939 3.6649 17 14 5.7972 -6.1520 5.0678 18 1 4.7257 -7.1260 4.7386 19 1 6.4856 -6.5756 6.3136 20 1 5.1999 -4.8068 5.2653 21 8 2.2924 -1.0894 -0.0067 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.9665 2.1204 0.0004 26 1 4.5212 1.2434 -0.0004 27 1 5.5896 -3.1886 -1.2541 28 1 3.8113 -3.1071 -1.2526 29 1 4.7576 -1.8900 -2.1423 30 1 6.4253 -3.5146 0.8001 31 1 5.6922 -3.6372 3.5251 32 1 4.7457 -4.8531 2.6340 33 1 8.1932 -7.5240 4.3918 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:11 Heat of formation + Delta-G solvation = -59.731726 kcal Electronic energy + Delta-G solvation = -16424.182695 eV Core-core repulsion = 13643.275569 eV Total energy + Delta-G solvation = -2780.907125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.54456 -40.66974 -36.22708 -35.36403 -34.34293 -34.05373 -32.02657 -29.85855 -27.38096 -25.41757 -23.74731 -22.70374 -21.73412 -20.86237 -19.21835 -18.09406 -17.53790 -16.96814 -16.74976 -16.40220 -15.93926 -15.25529 -15.01141 -14.59272 -14.33188 -14.03547 -13.93616 -13.73707 -13.67113 -13.29945 -13.09989 -12.93693 -12.73757 -12.52306 -12.42425 -11.95951 -11.67036 -10.93640 -10.88305 -10.72663 -9.99086 -9.18771 -8.41572 -6.48274 0.76286 1.30310 1.32977 1.45246 1.62622 1.67565 2.03326 2.26158 2.44932 2.93785 3.50893 3.81177 3.97701 4.02830 4.18448 4.25522 4.56374 4.69917 4.71437 4.75322 4.81170 4.86111 4.94852 4.99114 5.07075 5.18050 5.23738 5.31461 5.46411 5.69766 6.06660 6.29757 6.52220 6.77378 7.13476 7.34500 8.73012 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040293 B = 0.005330 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.750073 B = 5251.901040 C = 5653.833990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.035 4.035 3 C -0.222 4.222 4 C -0.208 4.208 5 C -0.012 4.012 6 C -0.022 4.022 7 H 0.157 0.843 8 C -0.139 4.139 9 C 0.501 3.499 10 O -0.592 6.592 11 N -0.699 5.699 12 C 0.231 3.769 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.030 3.970 16 N -0.929 5.929 17 Si 0.934 3.066 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.264 1.264 21 O -0.190 6.190 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.173 0.827 26 H 0.171 0.829 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.412 0.588 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 15.069 -10.819 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.241 4.241 4 C -0.227 4.227 5 C -0.063 4.063 6 C -0.043 4.043 7 H 0.175 0.825 8 C -0.196 4.196 9 C 0.288 3.712 10 O -0.473 6.473 11 N -0.349 5.349 12 C 0.108 3.892 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.171 4.171 16 N -0.567 5.567 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.189 1.189 21 O -0.087 6.087 22 H 0.116 0.884 23 H 0.087 0.913 24 H 0.127 0.873 25 H 0.190 0.810 26 H 0.188 0.812 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.248 0.752 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.963 14.678 -10.148 20.943 hybrid contribution 0.188 -0.412 0.711 0.842 sum -10.775 14.267 -9.437 20.216 Atomic orbital electron populations 1.20459 0.82925 1.04729 1.04665 1.23286 0.95721 0.84082 1.05386 1.21873 0.92280 1.00278 1.09668 1.21895 0.99615 0.93065 1.08142 1.21915 0.82783 0.94456 1.07111 1.20026 0.95425 0.95017 0.93826 0.82520 1.21809 1.03220 0.99492 0.95073 1.21204 0.81348 0.80866 0.87818 1.90658 1.37024 1.70584 1.49068 1.45964 1.26816 1.36555 1.25563 1.19109 0.95960 0.89458 0.84718 1.21268 1.08753 1.19072 1.09228 0.91804 1.25541 0.96929 0.94401 1.00228 1.69974 1.29922 1.22691 1.34162 0.85916 0.79538 0.79404 0.79380 1.19084 1.19586 1.18871 1.83956 1.17012 1.36385 1.71352 0.88357 0.91301 0.87277 0.80971 0.81186 0.89516 0.93522 0.88508 0.75195 0.97078 0.97381 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.42 71.24 0.74 -0.50 16 2 C -0.03 -0.93 7.32 24.83 0.18 -0.75 16 3 C -0.22 -5.34 10.81 22.19 0.24 -5.10 16 4 C -0.21 -5.36 10.78 22.19 0.24 -5.12 16 5 C -0.01 -0.38 5.20 24.83 0.13 -0.25 16 6 C -0.02 -0.61 3.13 -12.29 -0.04 -0.65 16 7 H 0.16 3.15 8.10 -2.39 -0.02 3.13 16 8 C -0.14 -3.09 9.07 71.98 0.65 -2.44 16 9 C 0.50 19.54 7.15 87.66 0.63 20.17 16 10 O -0.59 -28.86 15.81 3.10 0.05 -28.81 16 11 N -0.70 -28.16 5.44 -466.77 -2.54 -30.70 16 12 C 0.23 11.55 4.50 85.63 0.38 11.94 16 13 C -0.55 -30.11 9.83 25.60 0.25 -29.86 16 14 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 15 C 0.03 1.68 5.47 84.65 0.46 2.14 16 16 N -0.93 -55.34 13.96 21.45 0.30 -55.04 16 17 Si 0.93 44.57 27.47 68.60 1.88 46.46 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 21 O -0.19 -6.44 10.36 3.72 0.04 -6.40 16 22 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 26 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.09 1.71 7.57 -2.39 -0.02 1.69 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.41 14.01 7.74 -92.71 -0.72 13.29 16 31 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 32 H 0.01 0.43 7.57 -2.39 -0.02 0.42 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -74.07 288.61 3.94 -70.13 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.34 Total: 14.78 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 3.87 Total: -10.41 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.24 Total: -85.74 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: 0.09 Total: -35.21 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -74.07 3.94 -70.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.396 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds