Wall clock time and date at job start Sun Mar 29 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47327 * 274.07178 * 3 2 1 5 5 H 1.48508 * 109.46805 * 34.06922 * 3 2 1 6 6 H 1.48499 * 109.47108 * 154.06741 * 3 2 1 7 7 C 1.37877 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99922 * 352.86361 * 7 2 1 9 9 C 1.50695 * 120.00330 * 173.14311 * 7 2 1 10 10 C 1.53005 * 115.54822 * 91.78321 * 9 7 2 11 11 N 1.46495 * 109.47104 * 56.31178 * 10 9 7 12 12 C 1.34774 * 119.99930 * 185.07981 * 11 10 9 13 13 O 1.21740 * 119.99955 * 4.99203 * 12 11 10 14 14 C 1.41800 * 120.00128 * 184.99818 * 12 11 10 15 15 C 1.33734 * 125.96617 * 185.26321 * 14 12 11 16 16 O 1.33806 * 114.15929 * 179.97438 * 15 14 12 17 17 C 1.45604 * 110.35839 * 0.02562 * 16 15 14 18 18 C 1.51456 * 125.96048 * 4.95829 * 14 12 11 19 19 C 1.52996 * 117.49946 * 306.11852 * 9 7 2 20 20 C 1.52996 * 117.50103 * 237.45538 * 9 7 2 21 21 H 0.96997 * 120.00448 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46699 * 176.31282 * 10 9 7 23 23 H 1.09000 * 109.47322 * 296.30939 * 10 9 7 24 24 H 0.96996 * 120.00183 * 5.07714 * 11 10 9 25 25 H 1.07998 * 122.92155 * 359.97438 * 15 14 12 26 26 H 1.09004 * 110.49416 * 118.66484 * 17 16 15 27 27 H 1.09001 * 110.50047 * 241.19710 * 17 16 15 28 28 H 1.09004 * 110.65650 * 298.44606 * 18 14 12 29 29 H 1.08993 * 110.65973 * 61.55134 * 18 14 12 30 30 H 1.09003 * 117.50125 * 359.97438 * 19 9 7 31 31 H 1.08998 * 117.50583 * 145.01989 * 19 9 7 32 32 H 1.08997 * 117.50147 * 214.97870 * 20 9 7 33 33 H 1.09001 * 117.49900 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4105 2.0962 -1.3965 5 1 1.4921 2.6263 0.7844 6 1 3.5870 1.4169 0.6123 7 6 2.0046 -1.1940 -0.0005 8 1 1.4709 -2.1258 0.1152 9 6 3.5034 -1.1986 -0.1563 10 6 4.3026 -1.1617 1.1479 11 7 3.9042 -2.2873 1.9967 12 6 4.4034 -2.4009 3.2434 13 8 5.1132 -1.5222 3.6973 14 6 4.1020 -3.5441 4.0264 15 6 4.4482 -3.7346 5.3040 16 8 4.0396 -4.9022 5.8139 17 6 3.3111 -5.6658 4.8107 18 6 3.3263 -4.7598 3.5636 19 6 4.0903 -0.4672 -1.3652 20 6 4.0901 -1.9973 -1.3220 21 1 -0.4850 0.8400 0.0004 22 1 5.3668 -1.2343 0.9240 23 1 4.1040 -0.2253 1.6694 24 1 3.2810 -2.9508 1.6615 25 1 5.0089 -3.0090 5.8746 26 1 3.8171 -6.6098 4.6079 27 1 2.2868 -5.8454 5.1372 28 1 2.3123 -4.4822 3.2754 29 1 3.8402 -5.2528 2.7385 30 1 3.3922 0.0170 -2.0482 31 1 5.0458 0.0399 -1.2317 32 1 5.0456 -2.4962 -1.1598 33 1 3.3920 -2.5198 -1.9759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797685653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:44 Heat of formation + Delta-G solvation = -31.148174 kcal Electronic energy + Delta-G solvation = -16740.419438 eV Core-core repulsion = 13960.751788 eV Total energy + Delta-G solvation = -2779.667649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86973 -38.83346 -37.00169 -33.52331 -32.52957 -32.12397 -29.81620 -26.84922 -25.34178 -22.94463 -22.26009 -21.67969 -19.53647 -19.05310 -17.66722 -16.45070 -16.40838 -15.48991 -15.29494 -14.98628 -14.45771 -14.08429 -13.47368 -13.00578 -12.81691 -12.70561 -12.49134 -12.18921 -12.00057 -11.92621 -11.53910 -11.17219 -10.74416 -10.50611 -10.15635 -9.73779 -9.48537 -9.16035 -8.64989 -8.59393 -8.44524 -8.08128 -6.17687 -4.21196 1.56675 3.22468 3.28181 3.39044 3.45340 3.78402 3.96887 4.39714 4.48062 4.76708 4.87074 4.91202 5.11761 5.22918 5.42171 5.66563 5.73211 5.75227 5.91446 6.03192 6.06971 6.21356 6.25703 6.42544 6.53230 6.71180 6.95454 6.99440 7.08561 7.21849 7.67747 8.26851 8.39052 8.81843 8.86311 9.46369 10.93594 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029869 B = 0.006705 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.216486 B = 4174.989930 C = 4264.708659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.155 3.845 11 N -0.696 5.696 12 C 0.579 3.421 13 O -0.574 6.574 14 C -0.317 4.317 15 C 0.138 3.862 16 O -0.307 6.307 17 C 0.045 3.955 18 C -0.112 4.112 19 C -0.193 4.193 20 C -0.180 4.180 21 H 0.265 0.735 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.404 0.596 25 H 0.192 0.808 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -9.435 5.821 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.095 0.905 9 C -0.017 4.017 10 C 0.031 3.969 11 N -0.345 5.345 12 C 0.369 3.631 13 O -0.457 6.457 14 C -0.322 4.322 15 C 0.070 3.930 16 O -0.217 6.217 17 C -0.029 4.029 18 C -0.149 4.149 19 C -0.231 4.231 20 C -0.217 4.217 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.239 0.761 25 H 0.209 0.791 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.208 -8.837 6.325 13.040 hybrid contribution -0.098 0.717 -0.511 0.886 sum 7.110 -8.120 5.814 12.259 Atomic orbital electron populations 1.69892 1.06414 1.27286 1.49487 1.24961 0.94560 0.99171 0.93541 0.86867 0.81026 0.83323 0.78191 1.20492 1.22026 1.18006 1.20135 0.86624 0.94633 1.51402 0.90462 1.19621 0.95698 1.00704 0.85701 1.21108 0.95588 0.89078 0.91130 1.45681 1.46639 1.28384 1.13801 1.15969 0.80355 0.85196 0.81606 1.90770 1.40531 1.42243 1.72145 1.20922 1.13866 1.00180 0.97195 1.23397 0.90394 0.86114 0.93126 1.86689 1.67520 1.28127 1.39399 1.24093 0.97321 0.94992 0.86534 1.21696 1.01735 0.93122 0.98343 1.22914 1.01287 0.94803 1.04063 1.22883 1.00882 0.93144 1.04799 0.92488 0.94018 0.91606 0.76135 0.79130 0.89039 0.88932 0.88988 0.89494 0.89145 0.90704 0.90928 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 2 C 0.08 2.25 5.46 -17.82 -0.10 2.15 16 3 Si 0.88 21.60 24.89 -169.99 -4.23 17.37 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.10 5.65 56.52 0.32 -5.78 16 7 C -0.49 -12.89 8.89 -34.44 -0.31 -13.20 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 9 C -0.02 -0.36 0.94 -155.66 -0.15 -0.50 16 10 C 0.15 3.32 5.37 -4.04 -0.02 3.30 16 11 N -0.70 -13.57 5.34 -63.18 -0.34 -13.90 16 12 C 0.58 11.08 7.59 -14.90 -0.11 10.96 16 13 O -0.57 -12.75 16.70 5.15 0.09 -12.66 16 14 C -0.32 -4.77 6.06 -104.47 -0.63 -5.40 16 15 C 0.14 1.82 11.25 29.15 0.33 2.14 16 16 O -0.31 -3.68 11.03 -13.45 -0.15 -3.83 16 17 C 0.04 0.42 8.23 37.76 0.31 0.73 16 18 C -0.11 -1.30 6.16 -26.90 -0.17 -1.46 16 19 C -0.19 -3.99 7.59 -26.69 -0.20 -4.19 16 20 C -0.18 -3.47 9.93 -26.69 -0.27 -3.73 16 21 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 22 H 0.04 0.85 8.10 -51.93 -0.42 0.42 16 23 H 0.07 1.57 6.55 -51.93 -0.34 1.23 16 24 H 0.40 7.34 7.42 -40.82 -0.30 7.04 16 25 H 0.19 2.25 8.00 -52.49 -0.42 1.83 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.97 7.10 -51.93 -0.37 1.60 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 279.79 15.07 4.22 4.22 Total: -1.00 -31.52 279.79 -5.40 -36.92 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.45 Total: 6.74 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.31 Total: -9.20 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.44 Total: -39.56 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.06 Total: -16.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.23 Total: 17.37 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.52 -5.40 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797685653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.775 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds