Wall clock time and date at job start Sun Mar 29 2020 22:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47212 * 78.40595 * 3 2 1 5 5 C 1.37101 * 119.99817 * 277.69599 * 4 3 2 6 6 H 1.07997 * 119.99881 * 195.66222 * 5 4 3 7 7 C 1.38948 * 120.00074 * 15.66500 * 5 4 3 8 8 N 1.31414 * 119.99920 * 357.74083 * 7 5 4 9 9 Si 1.86800 * 119.99883 * 178.02321 * 7 5 4 10 10 H 1.48502 * 109.47520 * 59.99940 * 9 7 5 11 11 H 1.48502 * 109.47035 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47052 * 299.99433 * 9 7 5 13 13 C 1.34773 * 120.00176 * 97.69178 * 4 3 2 14 14 O 1.21290 * 120.00153 * 177.45832 * 13 4 3 15 15 C 1.50703 * 120.00145 * 357.46133 * 13 4 3 16 16 C 1.52999 * 112.99437 * 294.68848 * 15 13 4 17 17 C 1.53001 * 109.47450 * 300.58631 * 16 15 13 18 18 C 1.54032 * 113.81898 * 162.70367 * 15 13 4 19 19 O 1.44180 * 85.51711 * 268.35245 * 18 15 13 20 20 C 1.44182 * 93.33869 * 335.80603 * 19 18 15 21 21 H 4.40642 * 5.51424 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.47605 * 318.40757 * 3 2 1 23 23 H 1.08996 * 109.47124 * 198.39981 * 3 2 1 24 24 H 0.97002 * 119.99568 * 180.02562 * 8 7 5 25 25 H 1.08994 * 109.47441 * 60.59184 * 16 15 13 26 26 H 1.09002 * 109.47114 * 180.59227 * 16 15 13 27 27 H 1.09000 * 109.47202 * 305.19444 * 17 16 15 28 28 H 1.09004 * 109.47054 * 65.19247 * 17 16 15 29 29 H 1.08994 * 109.47325 * 185.19629 * 17 16 15 30 30 H 1.09000 * 113.86197 * 22.49415 * 18 15 13 31 31 H 1.08999 * 113.86369 * 154.20503 * 18 15 13 32 32 H 1.09001 * 113.86644 * 270.04870 * 20 19 18 33 33 H 1.08998 * 113.98237 * 138.34912 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2767 -1.3531 5 6 3.2136 -1.5699 -1.8016 6 1 3.7974 -1.8019 -2.6800 7 6 2.5427 -2.5819 -1.1260 8 7 1.8687 -2.3068 -0.0319 9 14 2.6053 -4.3347 -1.7686 10 1 4.0153 -4.7996 -1.8024 11 1 1.8147 -5.2183 -0.8744 12 1 2.0362 -4.3801 -3.1393 13 6 3.5059 0.7393 -2.1569 14 8 3.9536 0.5073 -3.2600 15 6 3.3651 2.1636 -1.6851 16 6 1.9086 2.5826 -1.4756 17 6 1.1420 2.4387 -2.7919 18 6 4.1946 3.1737 -2.5001 19 8 5.2277 2.9434 -1.5210 20 6 4.2913 2.5235 -0.5082 21 1 -1.0500 0.0002 -0.0001 22 1 3.0097 -0.7677 0.6822 23 1 3.0088 0.9759 0.3244 24 1 1.4006 -3.0134 0.4399 25 1 1.4526 1.9453 -0.7180 26 1 1.8730 3.6210 -1.1462 27 1 1.6514 3.0034 -3.5726 28 1 1.0986 1.3867 -3.0739 29 1 0.1299 2.8234 -2.6668 30 1 4.4511 2.8277 -3.5014 31 1 3.7926 4.1868 -2.4871 32 1 3.9188 3.3380 0.1130 33 1 4.6226 1.6620 0.0716 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798804555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:45 Heat of formation + Delta-G solvation = 32.470656 kcal Electronic energy + Delta-G solvation = -17897.017002 eV Core-core repulsion = 15120.108072 eV Total energy + Delta-G solvation = -2776.908930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78061 -37.80866 -35.27312 -33.57813 -31.68676 -31.35206 -28.34422 -26.60316 -25.94689 -24.87296 -22.59899 -21.47596 -18.30978 -17.93848 -16.67722 -16.07415 -15.71453 -15.43655 -15.05784 -14.23372 -14.16498 -13.84566 -13.38210 -12.77339 -12.56824 -12.24343 -12.08842 -12.06818 -11.57905 -11.22379 -11.09417 -10.76062 -10.55768 -10.35264 -10.15649 -9.90092 -9.55725 -9.37344 -9.14111 -8.68607 -8.41498 -7.93616 -6.27573 -3.91932 3.15051 3.22263 3.25563 3.60731 3.80634 4.02306 4.16706 4.30635 4.53203 4.80090 5.06061 5.27856 5.43326 5.50780 5.51074 5.65536 5.73132 5.89114 5.99100 6.09174 6.20514 6.30826 6.34483 6.36867 6.50571 6.62996 6.72721 6.93042 7.13171 7.51058 7.98870 8.39613 8.91345 9.09061 9.31299 9.84316 10.64450 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028159 B = 0.010095 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.129921 B = 2773.043020 C = 3142.460096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.080 4.080 3 C 0.228 3.772 4 N -0.439 5.439 5 C -0.305 4.305 6 H 0.104 0.896 7 C 0.029 3.971 8 N -0.876 5.876 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.480 3.520 14 O -0.577 6.577 15 C -0.139 4.139 16 C -0.123 4.123 17 C -0.144 4.144 18 C 0.057 3.943 19 O -0.377 6.377 20 C 0.040 3.960 21 H 0.195 0.805 22 H 0.119 0.881 23 H 0.058 0.942 24 H 0.269 0.731 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 7.788 2.472 8.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.083 4.083 3 C 0.105 3.895 4 N -0.157 5.157 5 C -0.432 4.432 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.516 5.516 9 Si 0.759 3.241 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.268 3.732 14 O -0.460 6.460 15 C -0.142 4.142 16 C -0.160 4.160 17 C -0.201 4.201 18 C -0.020 4.020 19 O -0.296 6.296 20 C -0.037 4.037 21 H 0.212 0.788 22 H 0.136 0.864 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.278 7.515 2.060 7.896 hybrid contribution -0.696 -1.013 -0.099 1.233 sum -1.974 6.502 1.961 7.073 Atomic orbital electron populations 1.24124 0.95254 1.08982 1.02199 1.22781 0.94004 0.93259 0.98218 1.18696 0.84704 0.99455 0.86666 1.43597 1.55380 1.05652 1.11060 1.19709 1.29087 0.81575 1.12845 0.87829 1.25315 0.95366 1.00502 0.96079 1.69850 1.32211 1.32893 1.16649 0.85896 0.78395 0.81165 0.78656 1.19868 1.20941 1.19953 1.19058 0.84137 0.84520 0.85485 1.90513 1.50054 1.84122 1.21354 1.23771 0.96989 0.96675 0.96801 1.21780 0.93220 1.01156 0.99879 1.21625 0.98958 1.02711 0.96824 1.23904 0.86017 0.96701 0.95399 1.89657 1.27424 1.88064 1.24465 1.24194 0.88220 0.99220 0.92050 0.78824 0.86365 0.92434 0.91916 0.89370 0.91927 0.93104 0.92097 0.93086 0.88059 0.90403 0.89943 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -5.85 18.95 29.55 0.56 -5.29 16 2 C -0.08 -1.75 8.31 -37.12 -0.31 -2.06 16 3 C 0.23 4.97 4.49 -6.83 -0.03 4.93 16 4 N -0.44 -10.93 2.61 -117.93 -0.31 -11.24 16 5 C -0.30 -8.31 9.43 -14.93 -0.14 -8.45 16 6 H 0.10 2.98 7.26 -52.49 -0.38 2.59 16 7 C 0.03 0.75 5.36 -17.47 -0.09 0.66 16 8 N -0.88 -22.20 7.90 55.50 0.44 -21.76 16 9 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.48 11.57 5.65 -10.99 -0.06 11.51 16 14 O -0.58 -15.90 15.58 5.55 0.09 -15.81 16 15 C -0.14 -2.59 0.31 -154.58 -0.05 -2.64 16 16 C -0.12 -2.02 5.06 -26.73 -0.14 -2.16 16 17 C -0.14 -2.41 9.56 37.16 0.36 -2.06 16 18 C 0.06 0.98 7.80 37.61 0.29 1.28 16 19 O -0.38 -7.17 12.40 -35.23 -0.44 -7.61 16 20 C 0.04 0.67 6.89 37.61 0.26 0.93 16 21 H 0.19 3.30 7.80 -54.09 -0.42 2.88 16 22 H 0.12 2.76 6.49 -51.93 -0.34 2.42 16 23 H 0.06 1.07 3.93 -51.93 -0.20 0.86 16 24 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 25 H 0.09 1.56 3.80 -51.93 -0.20 1.36 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 28 H 0.06 1.24 7.59 -51.93 -0.39 0.84 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.90 7.33 -51.93 -0.38 1.52 16 31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.09 1.60 6.74 -51.93 -0.35 1.25 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -30.33 270.67 -4.41 -34.74 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.89 Total: 5.27 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 0.65 Total: -3.35 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.13 Total: -33.00 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.35 Total: -23.42 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.33 -4.41 -34.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.207 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds