Wall clock time and date at job start Sun Mar 29 2020 22:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47212 * 78.40595 * 3 2 1 5 5 C 1.37101 * 119.99817 * 277.69599 * 4 3 2 6 6 H 1.07997 * 119.99881 * 195.66222 * 5 4 3 7 7 C 1.38948 * 120.00074 * 15.66500 * 5 4 3 8 8 N 1.31414 * 119.99920 * 357.74083 * 7 5 4 9 9 Si 1.86800 * 119.99883 * 178.02321 * 7 5 4 10 10 H 1.48502 * 109.47520 * 59.99940 * 9 7 5 11 11 H 1.48502 * 109.47035 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47052 * 299.99433 * 9 7 5 13 13 C 1.34773 * 120.00176 * 97.69178 * 4 3 2 14 14 O 1.21290 * 120.00153 * 177.45832 * 13 4 3 15 15 C 1.50703 * 120.00145 * 357.46133 * 13 4 3 16 16 C 1.52999 * 112.99437 * 294.68848 * 15 13 4 17 17 C 1.53001 * 109.47450 * 300.58631 * 16 15 13 18 18 C 1.54032 * 113.81898 * 162.70367 * 15 13 4 19 19 O 1.44180 * 85.51711 * 268.35245 * 18 15 13 20 20 C 1.44182 * 93.33869 * 335.80603 * 19 18 15 21 21 H 4.40642 * 5.51424 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.47605 * 318.40757 * 3 2 1 23 23 H 1.08996 * 109.47124 * 198.39981 * 3 2 1 24 24 H 0.97002 * 119.99568 * 180.02562 * 8 7 5 25 25 H 1.08994 * 109.47441 * 60.59184 * 16 15 13 26 26 H 1.09002 * 109.47114 * 180.59227 * 16 15 13 27 27 H 1.09000 * 109.47202 * 305.19444 * 17 16 15 28 28 H 1.09004 * 109.47054 * 65.19247 * 17 16 15 29 29 H 1.08994 * 109.47325 * 185.19629 * 17 16 15 30 30 H 1.09000 * 113.86197 * 22.49415 * 18 15 13 31 31 H 1.08999 * 113.86369 * 154.20503 * 18 15 13 32 32 H 1.09001 * 113.86644 * 270.04870 * 20 19 18 33 33 H 1.08998 * 113.98237 * 138.34912 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2767 -1.3531 5 6 3.2136 -1.5699 -1.8016 6 1 3.7974 -1.8019 -2.6800 7 6 2.5427 -2.5819 -1.1260 8 7 1.8687 -2.3068 -0.0319 9 14 2.6053 -4.3347 -1.7686 10 1 4.0153 -4.7996 -1.8024 11 1 1.8147 -5.2183 -0.8744 12 1 2.0362 -4.3801 -3.1393 13 6 3.5059 0.7393 -2.1569 14 8 3.9536 0.5073 -3.2600 15 6 3.3651 2.1636 -1.6851 16 6 1.9086 2.5826 -1.4756 17 6 1.1420 2.4387 -2.7919 18 6 4.1946 3.1737 -2.5001 19 8 5.2277 2.9434 -1.5210 20 6 4.2913 2.5235 -0.5082 21 1 -1.0500 0.0002 -0.0001 22 1 3.0097 -0.7677 0.6822 23 1 3.0088 0.9759 0.3244 24 1 1.4006 -3.0134 0.4399 25 1 1.4526 1.9453 -0.7180 26 1 1.8730 3.6210 -1.1462 27 1 1.6514 3.0034 -3.5726 28 1 1.0986 1.3867 -3.0739 29 1 0.1299 2.8234 -2.6668 30 1 4.4511 2.8277 -3.5014 31 1 3.7926 4.1868 -2.4871 32 1 3.9188 3.3380 0.1130 33 1 4.6226 1.6620 0.0716 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798804555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:45 Heat of formation + Delta-G solvation = 12.167774 kcal Electronic energy + Delta-G solvation = -17897.897401 eV Core-core repulsion = 15120.108072 eV Total energy + Delta-G solvation = -2777.789329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27949 -39.53881 -37.18430 -35.04612 -33.51481 -33.11032 -29.80666 -28.26875 -27.36681 -26.74287 -23.93164 -23.14000 -19.95228 -19.74043 -18.41745 -17.68189 -17.22984 -17.00724 -16.61267 -15.97133 -15.77590 -15.57959 -14.89924 -14.36754 -14.24123 -13.81091 -13.76427 -13.46976 -13.10309 -12.95186 -12.83986 -12.47801 -12.19863 -12.12564 -11.57826 -11.38556 -11.23130 -10.91992 -10.74755 -10.43068 -10.22688 -9.85367 -8.23331 -5.96358 1.34780 1.38132 1.47106 1.86288 2.10791 2.32495 2.48453 2.77565 2.99485 3.13051 3.26371 3.80023 3.95951 4.09760 4.21889 4.33912 4.39743 4.54009 4.62638 4.64859 4.78405 4.95796 5.02286 5.05647 5.14442 5.20146 5.30174 5.38185 5.42261 5.53463 6.02594 6.44216 7.11923 7.26708 7.40988 7.94748 8.64083 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028159 B = 0.010095 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.129921 B = 2773.043020 C = 3142.460096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.450 5.450 5 C -0.346 4.346 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.875 5.875 9 Si 0.986 3.014 10 H -0.271 1.271 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.468 3.532 14 O -0.628 6.628 15 C -0.144 4.144 16 C -0.117 4.117 17 C -0.141 4.141 18 C 0.063 3.937 19 O -0.404 6.404 20 C 0.048 3.952 21 H 0.226 0.774 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.272 0.728 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.059 0.941 28 H 0.011 0.989 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 9.418 3.901 10.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.117 4.117 3 C 0.110 3.890 4 N -0.167 5.167 5 C -0.474 4.474 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.513 5.513 9 Si 0.810 3.190 10 H -0.196 1.196 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.258 3.742 14 O -0.516 6.516 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.198 4.198 18 C -0.014 4.014 19 O -0.324 6.324 20 C -0.029 4.029 21 H 0.242 0.758 22 H 0.115 0.885 23 H 0.109 0.891 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.662 9.155 3.535 10.169 hybrid contribution -0.298 -1.523 -0.551 1.647 sum -2.960 7.632 2.985 8.713 Atomic orbital electron populations 1.24904 0.96127 1.07383 1.00590 1.22938 0.94436 0.94643 0.99654 1.18673 0.85206 1.00460 0.84647 1.43779 1.55416 1.05169 1.12327 1.19583 1.30898 0.83748 1.13149 0.91013 1.25913 0.94625 1.03156 0.96112 1.69997 1.31296 1.33648 1.16330 0.85102 0.78511 0.77489 0.77854 1.19632 1.19262 1.20779 1.20079 0.82548 0.86772 0.84813 1.90463 1.52020 1.85485 1.23601 1.23729 0.99410 0.93012 0.98615 1.21814 0.90924 1.03558 0.99151 1.21603 1.00925 0.99745 0.97549 1.24060 0.85008 0.98505 0.93779 1.89636 1.28794 1.88400 1.25522 1.24425 0.86547 1.00530 0.91376 0.75766 0.88452 0.89082 0.91702 0.90473 0.87159 0.92241 0.96947 0.90439 0.90698 0.85508 0.84885 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.50 18.95 74.32 1.41 -9.09 16 2 C -0.11 -4.88 8.31 31.13 0.26 -4.62 16 3 C 0.23 10.11 4.49 84.57 0.38 10.49 16 4 N -0.45 -23.06 2.61 -645.41 -1.68 -24.75 16 5 C -0.35 -19.73 9.43 84.04 0.79 -18.93 16 6 H 0.07 4.43 7.26 -2.91 -0.02 4.41 16 7 C 0.00 0.20 5.36 84.93 0.46 0.66 16 8 N -0.87 -44.21 7.90 21.66 0.17 -44.04 16 9 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.47 23.20 5.65 87.66 0.50 23.70 16 14 O -0.63 -36.61 15.58 -3.06 -0.05 -36.66 16 15 C -0.14 -5.16 0.31 -52.23 -0.02 -5.18 16 16 C -0.12 -3.48 5.06 30.59 0.15 -3.33 16 17 C -0.14 -4.48 9.56 71.98 0.69 -3.79 16 18 C 0.06 2.06 7.80 72.27 0.56 2.62 16 19 O -0.40 -14.67 12.40 -148.98 -1.85 -16.51 16 20 C 0.05 1.45 6.89 72.27 0.50 1.95 16 21 H 0.23 6.89 7.80 -4.42 -0.03 6.86 16 22 H 0.10 4.60 6.49 -2.39 -0.02 4.58 16 23 H 0.09 3.25 3.93 -2.39 -0.01 3.24 16 24 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 25 H 0.08 2.51 3.80 -2.39 -0.01 2.50 16 26 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.75 7.76 -2.39 -0.02 1.73 16 28 H 0.01 0.47 7.59 -2.38 -0.02 0.46 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.83 7.33 -2.39 -0.02 2.82 16 31 H 0.13 2.90 8.10 -2.39 -0.02 2.88 16 32 H 0.13 2.75 8.10 -2.39 -0.02 2.73 16 33 H 0.08 2.71 6.74 -2.39 -0.02 2.69 16 Total: -1.00 -69.45 270.67 5.41 -64.04 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.11 Total: 18.48 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.68 Total: -5.53 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -1.51 Total: -68.78 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -1.89 Total: -53.17 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.45 5.41 -64.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.205 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds