Wall clock time and date at job start Sun Mar 29 2020 21:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46656 * 158.10491 * 3 2 1 5 5 C 1.53003 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47328 * 180.02562 * 5 4 3 7 7 O 1.20835 * 119.99600 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00368 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00205 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55544 * 294.88682 * 10 9 8 12 12 H 1.07995 * 119.99892 * 95.15843 * 11 10 9 13 13 C 1.37875 * 119.99625 * 274.89404 * 11 10 9 14 14 N 1.31516 * 120.00645 * 6.38641 * 13 11 10 15 15 Si 1.86804 * 119.99966 * 186.39037 * 13 11 10 16 16 H 1.48497 * 109.46911 * 59.99497 * 15 13 11 17 17 H 1.48501 * 109.47278 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46934 * 299.99733 * 15 13 11 19 19 C 1.52999 * 117.50107 * 80.55676 * 10 9 8 20 20 C 1.53002 * 117.49851 * 149.21518 * 10 9 8 21 21 H 1.09004 * 109.47415 * 38.11041 * 3 2 1 22 22 H 1.08998 * 109.47078 * 278.10867 * 3 2 1 23 23 H 1.09006 * 109.47042 * 60.00590 * 4 3 2 24 24 H 1.08998 * 109.47684 * 300.00005 * 4 3 2 25 25 H 1.09004 * 109.46971 * 60.00633 * 5 4 3 26 26 H 1.08998 * 109.47214 * 300.00648 * 5 4 3 27 27 H 1.09001 * 109.46840 * 59.99792 * 9 8 6 28 28 H 1.09000 * 109.47129 * 299.99899 * 9 8 6 29 29 H 0.96998 * 120.00543 * 180.02562 * 14 13 11 30 30 H 1.08998 * 117.50651 * 215.00344 * 19 10 9 31 31 H 1.09007 * 117.49575 * 0.02562 * 19 10 9 32 32 H 1.09004 * 117.50100 * 359.97438 * 20 10 9 33 33 H 1.09000 * 117.49932 * 144.97481 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3394 -0.5379 5 6 4.6474 1.3404 -0.5374 6 6 5.1491 2.6592 -1.0666 7 8 4.3634 3.5111 -1.4087 8 8 6.4686 2.8875 -1.1580 9 6 6.8797 4.1801 -1.6761 10 6 8.4075 4.2553 -1.7055 11 6 9.0862 4.2161 -0.3605 12 1 9.4492 3.2785 0.0339 13 6 9.2486 5.3779 0.3638 14 7 8.7024 6.4976 -0.0578 15 14 10.2447 5.3619 1.9441 16 1 11.6332 4.9255 1.6495 17 1 10.2686 6.7270 2.5280 18 1 9.6244 4.4203 2.9106 19 6 9.1254 3.5854 -2.8788 20 6 9.0517 5.1122 -2.7971 21 1 2.9718 -0.8078 -0.6343 22 1 2.9714 -0.1441 1.0174 23 1 2.7536 2.1478 0.0964 24 1 2.7539 1.4841 -1.5553 25 1 5.0114 0.5319 -1.1714 26 1 5.0104 1.1957 0.4802 27 1 6.4896 4.9696 -1.0339 28 1 6.4898 4.3074 -2.6860 29 1 8.8170 7.3150 0.4516 30 1 10.0885 3.1163 -2.6780 31 1 8.5092 3.0914 -3.6301 32 1 8.3871 5.6220 -3.4947 33 1 9.9662 5.6478 -2.5424 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813072989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:57 Heat of formation + Delta-G solvation = -53.385511 kcal Electronic energy + Delta-G solvation = -16037.953738 eV Core-core repulsion = 13257.321805 eV Total energy + Delta-G solvation = -2780.631933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85185 -37.29802 -36.77626 -35.34581 -34.37813 -31.98918 -29.37616 -26.75148 -25.28023 -23.02959 -21.20665 -20.08259 -19.28111 -17.95896 -16.87008 -16.45952 -16.25926 -15.32661 -15.19226 -14.62412 -14.09712 -13.90511 -13.61459 -13.10971 -12.91906 -12.25426 -12.13455 -11.97447 -11.73430 -11.63827 -11.50890 -10.99521 -10.95668 -10.88533 -10.57896 -10.32017 -10.05627 -9.87239 -9.57643 -8.85892 -8.49592 -8.23896 -6.09541 -4.15211 2.52798 2.59776 2.73171 3.27111 3.29766 3.33603 3.35567 3.82187 4.36565 4.72977 4.73571 4.88153 5.18483 5.20828 5.24346 5.25120 5.46630 5.61787 5.85368 5.95929 6.03910 6.21793 6.30736 6.50292 6.63400 6.70369 7.00343 7.24542 7.33710 7.36833 7.44820 7.83432 8.32485 8.41978 8.86303 9.50848 10.99806 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029291 B = 0.004990 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.711559 B = 5609.631406 C = 6113.449958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.210 3.790 3 C -0.026 4.026 4 C -0.107 4.107 5 C -0.114 4.114 6 C 0.451 3.549 7 O -0.525 6.525 8 O -0.338 6.338 9 C 0.116 3.884 10 C 0.038 3.962 11 C -0.491 4.491 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.881 5.881 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.205 4.205 20 C -0.147 4.147 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -10.736 -0.728 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.108 4.108 3 C -0.066 4.066 4 C -0.146 4.146 5 C -0.151 4.151 6 C 0.294 3.706 7 O -0.416 6.416 8 O -0.253 6.253 9 C 0.043 3.957 10 C 0.038 3.962 11 C -0.529 4.529 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.518 5.518 15 Si 0.721 3.279 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.242 4.242 20 C -0.184 4.184 21 H 0.130 0.870 22 H 0.131 0.869 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.849 -10.246 -0.790 12.350 hybrid contribution 0.931 0.352 0.783 1.267 sum -5.918 -9.894 -0.007 11.529 Atomic orbital electron populations 1.81234 1.13216 1.08568 1.08957 1.29216 0.95350 0.93158 0.93083 1.19331 0.81529 1.00502 1.05259 1.21354 0.93868 0.95746 1.03637 1.21285 0.95375 0.94050 1.04426 1.23499 0.82030 0.89524 0.75534 1.90635 1.57294 1.47068 1.46559 1.86510 1.23301 1.40101 1.75378 1.22890 0.96549 0.80390 0.95900 1.18770 0.87569 0.99222 0.90686 1.20348 1.37679 0.93930 1.00946 0.91882 1.25016 0.95236 0.95525 0.97648 1.69984 1.42832 0.99735 1.39241 0.86646 0.80834 0.77093 0.83373 1.20136 1.21296 1.20109 1.23006 1.02387 0.95637 1.03199 1.22549 1.02584 0.91539 1.01736 0.87006 0.86933 0.90001 0.90126 0.87516 0.87266 0.90584 0.94361 0.92815 0.90064 0.91546 0.91651 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.77 18.54 42.15 0.78 -4.99 16 2 C 0.21 1.99 15.43 -20.76 -0.32 1.67 16 3 C -0.03 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.11 -0.93 4.46 -26.73 -0.12 -1.05 16 5 C -0.11 -1.12 5.81 -27.88 -0.16 -1.28 16 6 C 0.45 7.62 7.96 36.01 0.29 7.91 16 7 O -0.53 -10.41 15.73 -18.76 -0.30 -10.71 16 8 O -0.34 -6.88 10.16 -39.25 -0.40 -7.28 16 9 C 0.12 2.66 5.29 37.15 0.20 2.85 16 10 C 0.04 0.92 1.61 -155.66 -0.25 0.67 16 11 C -0.49 -13.01 8.77 -34.44 -0.30 -13.31 16 12 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 13 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 14 N -0.88 -24.42 12.93 55.43 0.72 -23.70 16 15 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.21 -4.32 9.96 -26.70 -0.27 -4.58 16 20 C -0.15 -3.32 9.43 -26.69 -0.25 -3.58 16 21 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 24 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 25 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.95 8.13 -51.93 -0.42 1.52 16 28 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -32.09 301.71 -5.73 -37.82 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.61 Total: -1.92 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.45 Total: -9.26 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 1.50 Total: -28.69 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.69 Total: -17.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.09 -5.73 -37.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813072989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.565 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds