Wall clock time and date at job start Sun Mar 29 2020 21:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46656 * 158.10491 * 3 2 1 5 5 C 1.53003 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47328 * 180.02562 * 5 4 3 7 7 O 1.20835 * 119.99600 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00368 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00205 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55544 * 294.88682 * 10 9 8 12 12 H 1.07995 * 119.99892 * 95.15843 * 11 10 9 13 13 C 1.37875 * 119.99625 * 274.89404 * 11 10 9 14 14 N 1.31516 * 120.00645 * 6.38641 * 13 11 10 15 15 Si 1.86804 * 119.99966 * 186.39037 * 13 11 10 16 16 H 1.48497 * 109.46911 * 59.99497 * 15 13 11 17 17 H 1.48501 * 109.47278 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46934 * 299.99733 * 15 13 11 19 19 C 1.52999 * 117.50107 * 80.55676 * 10 9 8 20 20 C 1.53002 * 117.49851 * 149.21518 * 10 9 8 21 21 H 1.09004 * 109.47415 * 38.11041 * 3 2 1 22 22 H 1.08998 * 109.47078 * 278.10867 * 3 2 1 23 23 H 1.09006 * 109.47042 * 60.00590 * 4 3 2 24 24 H 1.08998 * 109.47684 * 300.00005 * 4 3 2 25 25 H 1.09004 * 109.46971 * 60.00633 * 5 4 3 26 26 H 1.08998 * 109.47214 * 300.00648 * 5 4 3 27 27 H 1.09001 * 109.46840 * 59.99792 * 9 8 6 28 28 H 1.09000 * 109.47129 * 299.99899 * 9 8 6 29 29 H 0.96998 * 120.00543 * 180.02562 * 14 13 11 30 30 H 1.08998 * 117.50651 * 215.00344 * 19 10 9 31 31 H 1.09007 * 117.49575 * 0.02562 * 19 10 9 32 32 H 1.09004 * 117.50100 * 359.97438 * 20 10 9 33 33 H 1.09000 * 117.49932 * 144.97481 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3394 -0.5379 5 6 4.6474 1.3404 -0.5374 6 6 5.1491 2.6592 -1.0666 7 8 4.3634 3.5111 -1.4087 8 8 6.4686 2.8875 -1.1580 9 6 6.8797 4.1801 -1.6761 10 6 8.4075 4.2553 -1.7055 11 6 9.0862 4.2161 -0.3605 12 1 9.4492 3.2785 0.0339 13 6 9.2486 5.3779 0.3638 14 7 8.7024 6.4976 -0.0578 15 14 10.2447 5.3619 1.9441 16 1 11.6332 4.9255 1.6495 17 1 10.2686 6.7270 2.5280 18 1 9.6244 4.4203 2.9106 19 6 9.1254 3.5854 -2.8788 20 6 9.0517 5.1122 -2.7971 21 1 2.9718 -0.8078 -0.6343 22 1 2.9714 -0.1441 1.0174 23 1 2.7536 2.1478 0.0964 24 1 2.7539 1.4841 -1.5553 25 1 5.0114 0.5319 -1.1714 26 1 5.0104 1.1957 0.4802 27 1 6.4896 4.9696 -1.0339 28 1 6.4898 4.3074 -2.6860 29 1 8.8170 7.3150 0.4516 30 1 10.0885 3.1163 -2.6780 31 1 8.5092 3.0914 -3.6301 32 1 8.3871 5.6220 -3.4947 33 1 9.9662 5.6478 -2.5424 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813072989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:56 Heat of formation + Delta-G solvation = -71.976296 kcal Electronic energy + Delta-G solvation = -16038.759895 eV Core-core repulsion = 13257.321805 eV Total energy + Delta-G solvation = -2781.438090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28343 -38.65143 -37.91211 -36.89986 -35.23847 -33.99377 -30.28900 -28.38281 -27.20922 -23.99248 -22.93435 -21.26320 -21.14292 -18.88473 -18.41161 -17.86322 -17.50454 -16.75628 -16.52566 -16.20838 -15.54122 -14.95705 -14.78879 -14.43488 -13.98423 -13.72441 -13.60456 -13.42553 -12.88501 -12.77057 -12.68895 -12.52717 -12.37763 -12.27134 -12.06108 -11.63813 -11.62523 -11.51209 -11.26819 -10.74331 -10.45724 -10.04744 -8.10815 -6.22251 1.40243 1.46284 1.47362 1.54818 1.73045 1.89554 2.06687 2.45524 3.16876 3.18881 3.47260 3.82074 4.14393 4.18899 4.20034 4.38133 4.45108 4.54431 4.69719 4.74223 4.74980 4.92546 4.94747 4.99771 5.21150 5.21997 5.37247 5.51309 5.61329 5.77571 5.86065 6.39019 6.68305 6.83655 6.96557 7.46894 8.97865 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029291 B = 0.004990 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.711559 B = 5609.631406 C = 6113.449958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.236 3.764 3 C -0.015 4.015 4 C -0.104 4.104 5 C -0.100 4.100 6 C 0.441 3.559 7 O -0.562 6.562 8 O -0.348 6.348 9 C 0.129 3.871 10 C 0.006 3.994 11 C -0.504 4.504 12 H 0.060 0.940 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 0.953 3.047 16 H -0.269 1.269 17 H -0.289 1.289 18 H -0.268 1.268 19 C -0.175 4.175 20 C -0.153 4.153 21 H 0.152 0.848 22 H 0.147 0.853 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.146 0.854 26 H 0.136 0.864 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.260 0.740 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -13.178 -0.312 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.080 4.080 3 C -0.054 4.054 4 C -0.143 4.143 5 C -0.137 4.137 6 C 0.287 3.713 7 O -0.454 6.454 8 O -0.264 6.264 9 C 0.055 3.945 10 C 0.005 3.995 11 C -0.541 4.541 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.550 5.550 15 Si 0.778 3.222 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.193 1.193 19 C -0.212 4.212 20 C -0.191 4.191 21 H 0.169 0.831 22 H 0.164 0.836 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.011 -12.716 -0.373 14.070 hybrid contribution 0.657 1.099 0.621 1.423 sum -5.354 -11.616 0.248 12.793 Atomic orbital electron populations 1.81262 1.15614 1.10853 1.11560 1.29986 0.96068 0.91069 0.90897 1.19569 0.78463 0.99419 1.07931 1.21272 0.93187 0.97133 1.02698 1.21502 0.95572 0.90473 1.06148 1.25017 0.80411 0.91572 0.74338 1.90622 1.57640 1.48974 1.48190 1.86516 1.25702 1.38365 1.75774 1.22413 0.95896 0.80874 0.95328 1.18876 0.88242 1.01586 0.90758 1.20644 1.37551 0.93787 1.02165 0.92216 1.25743 0.96188 0.95244 1.00664 1.70108 1.44179 1.00169 1.40551 0.85692 0.79636 0.76956 0.79871 1.19399 1.21480 1.19333 1.23015 1.02317 0.94277 1.01557 1.22487 1.01925 0.92873 1.01799 0.83059 0.83562 0.92220 0.91512 0.83598 0.84568 0.94567 0.93720 0.93116 0.89488 0.88943 0.90692 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.21 18.54 20.01 0.37 -12.84 16 2 C 0.24 4.01 15.43 89.44 1.38 5.39 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.51 4.46 30.59 0.14 -1.38 16 5 C -0.10 -1.60 5.81 29.85 0.17 -1.42 16 6 C 0.44 14.37 7.96 71.24 0.57 14.93 16 7 O -0.56 -22.48 15.73 21.94 0.35 -22.13 16 8 O -0.35 -13.86 10.16 -51.40 -0.52 -14.38 16 9 C 0.13 5.97 5.29 71.98 0.38 6.35 16 10 C 0.01 0.28 1.61 -52.93 -0.08 0.19 16 11 C -0.50 -26.63 8.77 25.60 0.22 -26.41 16 12 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 13 C 0.02 1.16 5.39 84.65 0.46 1.62 16 14 N -0.91 -51.57 12.93 21.45 0.28 -51.29 16 15 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 C -0.17 -7.03 9.96 30.62 0.30 -6.73 16 20 C -0.15 -6.93 9.43 30.62 0.29 -6.64 16 21 H 0.15 -0.06 8.14 -2.39 -0.02 -0.07 16 22 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.06 1.14 8.10 -2.38 -0.02 1.12 16 24 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 25 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.93 8.13 -2.39 -0.02 1.91 16 28 H 0.04 1.95 8.09 -2.39 -0.02 1.93 16 29 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 32 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 33 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -73.23 301.71 7.58 -65.65 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.09 Total: 5.00 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 3.99 Total: -14.02 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.65 Total: -64.13 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.18 Total: -36.52 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -73.23 7.58 -65.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813072989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.326 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds