Wall clock time and date at job start Sun Mar 29 2020 21:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 112.85200 * 104.29086 * 3 2 1 5 5 O 1.45198 * 109.46884 * 48.79934 * 4 3 2 6 6 C 1.34231 * 116.99983 * 179.97438 * 5 4 3 7 7 O 1.20822 * 120.00142 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00053 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47248 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47065 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00127 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99841 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00192 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00184 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47225 * 89.99262 * 14 12 10 16 16 H 1.48494 * 109.47308 * 209.99674 * 14 12 10 17 17 H 1.48499 * 109.46710 * 329.99993 * 14 12 10 18 18 C 1.53784 * 113.69290 * 235.55735 * 3 2 1 19 19 C 1.53780 * 87.08085 * 89.12571 * 18 3 2 20 20 C 1.53780 * 87.08071 * 25.43718 * 19 18 3 21 21 H 1.09002 * 109.47398 * 168.80272 * 4 3 2 22 22 H 1.09001 * 109.47194 * 288.80453 * 4 3 2 23 23 H 1.09008 * 109.47488 * 300.00148 * 8 6 5 24 24 H 1.09001 * 109.47517 * 59.99934 * 8 6 5 25 25 H 1.08998 * 109.47295 * 300.00082 * 9 8 6 26 26 H 1.09004 * 109.47225 * 60.00231 * 9 8 6 27 27 H 0.97003 * 120.00137 * 180.02562 * 13 12 10 28 28 H 1.08998 * 113.62094 * 203.67540 * 18 3 2 29 29 H 1.09000 * 113.60922 * 334.58173 * 18 3 2 30 30 H 1.08999 * 113.61781 * 270.88707 * 19 18 3 31 31 H 1.09003 * 113.61217 * 139.98268 * 19 18 3 32 32 H 1.09005 * 113.61564 * 220.01497 * 20 19 18 33 33 H 1.08998 * 113.61983 * 89.11462 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.2020 0.3490 -1.3663 5 8 2.5584 1.5433 -1.8835 6 6 2.9686 1.9859 -3.0826 7 8 3.8363 1.3946 -3.6803 8 6 2.3469 3.2203 -3.6832 9 6 2.9886 3.5047 -5.0427 10 6 2.3663 4.7387 -5.6435 11 1 1.5911 5.2675 -5.1091 12 6 2.7876 5.1933 -6.8752 13 7 2.2450 6.2705 -7.3994 14 14 4.1291 4.2790 -7.7995 15 1 3.5141 3.2439 -8.6687 16 1 4.8948 5.2372 -8.6365 17 1 5.0447 3.6290 -6.8277 18 6 3.2255 0.7974 1.1613 19 6 3.1732 -0.5043 1.9785 20 6 3.2246 -1.2555 0.6377 21 1 4.2720 0.5288 -1.2621 22 1 3.0382 -0.4794 -2.0556 23 1 1.2763 3.0614 -3.8133 24 1 2.5101 4.0692 -3.0193 25 1 4.0591 3.6634 -4.9131 26 1 2.8249 2.6557 -5.7065 27 1 2.5411 6.5900 -8.2661 28 1 4.2384 1.1469 0.9613 29 1 2.5746 1.5817 1.5475 30 1 2.2377 -0.6422 2.5207 31 1 4.0527 -0.6638 2.6024 32 1 2.5729 -2.1286 0.6010 33 1 4.2372 -1.4673 0.2943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813085826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:50 Heat of formation + Delta-G solvation = -50.588846 kcal Electronic energy + Delta-G solvation = -16065.505415 eV Core-core repulsion = 13284.994755 eV Total energy + Delta-G solvation = -2780.510660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60743 -39.55982 -36.20839 -35.94009 -33.64330 -31.49279 -29.74622 -26.52600 -26.21537 -24.12713 -22.01502 -21.30872 -19.81645 -17.58765 -17.30575 -16.63289 -16.28887 -16.06058 -15.19200 -14.49614 -14.37383 -14.08607 -13.80941 -13.08005 -13.05194 -12.93493 -12.66057 -12.49052 -12.14397 -11.92056 -11.50631 -11.27827 -11.04524 -10.97560 -10.89286 -10.45987 -10.35327 -10.18077 -9.94851 -9.71882 -9.27294 -8.56794 -6.08079 -4.08208 2.44452 2.56793 2.63321 2.89276 3.33349 3.40305 3.48676 3.50336 4.03119 4.15302 4.35965 4.38929 4.45060 4.89882 5.10329 5.12986 5.23307 5.26201 5.26507 5.42311 5.48693 5.57759 5.60859 5.83519 5.97085 5.99694 6.42626 6.70681 7.21371 7.28817 7.39447 7.69244 8.13544 8.45817 8.94320 9.53428 11.04535 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047867 B = 0.004530 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.817381 B = 6179.137630 C = 6449.496931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.235 3.765 3 C 0.005 3.995 4 C 0.081 3.919 5 O -0.362 6.362 6 C 0.460 3.540 7 O -0.510 6.510 8 C -0.096 4.096 9 C -0.002 4.002 10 C -0.528 4.528 11 H 0.075 0.925 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.261 1.261 18 C -0.117 4.117 19 C -0.144 4.144 20 C -0.114 4.114 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.264 0.736 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -14.090 18.098 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.084 4.084 3 C 0.001 3.999 4 C 0.006 3.994 5 O -0.280 6.280 6 C 0.304 3.696 7 O -0.397 6.397 8 C -0.134 4.134 9 C -0.039 4.039 10 C -0.566 4.566 11 H 0.093 0.907 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.186 1.186 18 C -0.156 4.156 19 C -0.181 4.181 20 C -0.153 4.153 21 H 0.108 0.892 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.487 -14.171 17.772 22.996 hybrid contribution 1.096 -0.455 -0.736 1.396 sum 4.583 -14.625 17.036 22.916 Atomic orbital electron populations 1.81224 1.12281 1.08077 1.07926 1.27938 0.93690 0.93374 0.93377 1.19304 0.83222 1.01374 0.95998 1.22913 0.97235 0.87133 0.92128 1.86600 1.62224 1.42701 1.36444 1.24749 0.80539 0.86484 0.77818 1.90622 1.30470 1.57596 1.60984 1.21562 1.01695 0.90721 0.99410 1.19483 0.96745 0.97583 0.90097 1.21032 1.22187 1.09451 1.03915 0.90659 1.24957 0.96274 0.94687 0.97160 1.69905 1.42725 1.23155 1.18069 0.86800 0.82763 0.79793 0.80214 1.20166 1.21290 1.18583 1.23070 1.02070 0.97322 0.93111 1.22925 1.03180 0.95674 0.96321 1.23015 1.02075 0.94917 0.95267 0.89179 0.90427 0.88376 0.88196 0.95539 0.96064 0.92579 0.87721 0.90032 0.89829 0.89981 0.90060 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.27 18.54 42.15 0.78 -5.49 16 2 C 0.23 2.85 13.67 -20.76 -0.28 2.56 16 3 C 0.00 0.04 1.12 -156.48 -0.18 -0.14 16 4 C 0.08 0.89 4.90 37.16 0.18 1.07 16 5 O -0.36 -5.42 9.68 -39.26 -0.38 -5.80 16 6 C 0.46 8.29 7.96 36.00 0.29 8.58 16 7 O -0.51 -10.36 15.73 -18.75 -0.29 -10.65 16 8 C -0.10 -1.88 5.75 -27.88 -0.16 -2.04 16 9 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 10 C -0.53 -14.91 9.66 -34.44 -0.33 -15.24 16 11 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 14 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 18 C -0.12 -0.78 7.20 -25.92 -0.19 -0.97 16 19 C -0.14 -0.74 7.79 -25.92 -0.20 -0.94 16 20 C -0.11 -0.62 7.21 -25.92 -0.19 -0.81 16 21 H 0.09 0.84 7.94 -51.93 -0.41 0.43 16 22 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 23 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 24 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 25 H 0.03 0.66 7.16 -51.93 -0.37 0.28 16 26 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.10 0.56 7.96 -51.93 -0.41 0.14 16 29 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.43 8.08 -51.93 -0.42 0.02 16 33 H 0.11 0.39 8.10 -51.93 -0.42 -0.03 16 LS Contribution 292.05 15.07 4.40 4.40 Total: -1.00 -33.75 292.05 -5.19 -38.93 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -4.55 Total: -5.84 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.25 Total: -6.07 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 1.55 Total: -32.34 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.67 Total: -16.45 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.75 -5.19 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813085826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.658 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds