Wall clock time and date at job start Sun Mar 29 2020 21:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 112.85200 * 104.29086 * 3 2 1 5 5 O 1.45198 * 109.46884 * 48.79934 * 4 3 2 6 6 C 1.34231 * 116.99983 * 179.97438 * 5 4 3 7 7 O 1.20822 * 120.00142 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00053 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47248 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47065 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00127 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99841 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00192 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00184 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47225 * 89.99262 * 14 12 10 16 16 H 1.48494 * 109.47308 * 209.99674 * 14 12 10 17 17 H 1.48499 * 109.46710 * 329.99993 * 14 12 10 18 18 C 1.53784 * 113.69290 * 235.55735 * 3 2 1 19 19 C 1.53780 * 87.08085 * 89.12571 * 18 3 2 20 20 C 1.53780 * 87.08071 * 25.43718 * 19 18 3 21 21 H 1.09002 * 109.47398 * 168.80272 * 4 3 2 22 22 H 1.09001 * 109.47194 * 288.80453 * 4 3 2 23 23 H 1.09008 * 109.47488 * 300.00148 * 8 6 5 24 24 H 1.09001 * 109.47517 * 59.99934 * 8 6 5 25 25 H 1.08998 * 109.47295 * 300.00082 * 9 8 6 26 26 H 1.09004 * 109.47225 * 60.00231 * 9 8 6 27 27 H 0.97003 * 120.00137 * 180.02562 * 13 12 10 28 28 H 1.08998 * 113.62094 * 203.67540 * 18 3 2 29 29 H 1.09000 * 113.60922 * 334.58173 * 18 3 2 30 30 H 1.08999 * 113.61781 * 270.88707 * 19 18 3 31 31 H 1.09003 * 113.61217 * 139.98268 * 19 18 3 32 32 H 1.09005 * 113.61564 * 220.01497 * 20 19 18 33 33 H 1.08998 * 113.61983 * 89.11462 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.2020 0.3490 -1.3663 5 8 2.5584 1.5433 -1.8835 6 6 2.9686 1.9859 -3.0826 7 8 3.8363 1.3946 -3.6803 8 6 2.3469 3.2203 -3.6832 9 6 2.9886 3.5047 -5.0427 10 6 2.3663 4.7387 -5.6435 11 1 1.5911 5.2675 -5.1091 12 6 2.7876 5.1933 -6.8752 13 7 2.2450 6.2705 -7.3994 14 14 4.1291 4.2790 -7.7995 15 1 3.5141 3.2439 -8.6687 16 1 4.8948 5.2372 -8.6365 17 1 5.0447 3.6290 -6.8277 18 6 3.2255 0.7974 1.1613 19 6 3.1732 -0.5043 1.9785 20 6 3.2246 -1.2555 0.6377 21 1 4.2720 0.5288 -1.2621 22 1 3.0382 -0.4794 -2.0556 23 1 1.2763 3.0614 -3.8133 24 1 2.5101 4.0692 -3.0193 25 1 4.0591 3.6634 -4.9131 26 1 2.8249 2.6557 -5.7065 27 1 2.5411 6.5900 -8.2661 28 1 4.2384 1.1469 0.9613 29 1 2.5746 1.5817 1.5475 30 1 2.2377 -0.6422 2.5207 31 1 4.0527 -0.6638 2.6024 32 1 2.5729 -2.1286 0.6010 33 1 4.2372 -1.4673 0.2943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813085826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:49 Heat of formation + Delta-G solvation = -71.093081 kcal Electronic energy + Delta-G solvation = -16066.394545 eV Core-core repulsion = 13284.994755 eV Total energy + Delta-G solvation = -2781.399791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69085 -40.47726 -37.51004 -36.91312 -35.63307 -33.46264 -30.64370 -28.29341 -26.69861 -25.08999 -23.59657 -22.06573 -21.32881 -19.35224 -18.44274 -17.92249 -17.60880 -16.97315 -16.30568 -15.95350 -15.55960 -15.33368 -14.95423 -14.77141 -14.20905 -14.07546 -13.93994 -13.44594 -13.23812 -13.10868 -12.92249 -12.65633 -12.25898 -12.03901 -11.89072 -11.80723 -11.66738 -11.62659 -11.44607 -11.24350 -11.19338 -10.79086 -8.31902 -6.36901 1.20603 1.35905 1.37438 1.50439 1.51387 1.64087 1.74893 2.35084 2.71893 3.03570 3.46801 3.50051 3.61984 3.87668 3.99994 4.30001 4.31346 4.37220 4.40902 4.51305 4.82342 4.85332 4.85918 5.06398 5.07742 5.16950 5.24159 5.34181 5.36243 5.43318 5.58428 6.20804 6.46707 6.68354 6.79761 7.28465 8.83886 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047867 B = 0.004530 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.817381 B = 6179.137630 C = 6449.496931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.252 3.748 3 C -0.006 4.006 4 C 0.073 3.927 5 O -0.363 6.363 6 C 0.473 3.527 7 O -0.534 6.534 8 C -0.096 4.096 9 C 0.003 3.997 10 C -0.535 4.535 11 H 0.047 0.953 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.942 3.058 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.253 1.253 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.101 4.101 21 H 0.114 0.886 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.268 0.732 28 H 0.125 0.875 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.041 -15.811 19.247 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.065 4.065 3 C -0.009 4.009 4 C -0.001 4.001 5 O -0.280 6.280 6 C 0.318 3.682 7 O -0.423 6.423 8 C -0.133 4.133 9 C -0.034 4.034 10 C -0.573 4.573 11 H 0.065 0.935 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.766 3.234 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.177 1.177 18 C -0.154 4.154 19 C -0.174 4.174 20 C -0.140 4.140 21 H 0.132 0.868 22 H 0.096 0.904 23 H 0.121 0.879 24 H 0.132 0.868 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.562 -15.904 18.956 25.362 hybrid contribution 0.393 0.087 -0.995 1.073 sum 5.955 -15.817 17.962 24.663 Atomic orbital electron populations 1.81233 1.14176 1.10236 1.09771 1.28672 0.94495 0.91602 0.91713 1.19712 0.81066 1.04572 0.95586 1.23365 0.98547 0.85315 0.92878 1.86555 1.62336 1.44351 1.34722 1.24116 0.79836 0.85724 0.78508 1.90612 1.31543 1.58262 1.61901 1.21335 1.01711 0.92628 0.97627 1.19315 0.96439 0.95324 0.92359 1.21359 1.21447 1.10562 1.03929 0.93485 1.25853 0.98771 0.95523 0.98318 1.70033 1.44620 1.24954 1.18842 0.85772 0.79926 0.78692 0.79014 1.19408 1.20410 1.17660 1.23187 1.02572 0.97594 0.92069 1.22898 1.03856 0.94295 0.96316 1.23121 1.03108 0.93283 0.94459 0.86770 0.90384 0.87858 0.86807 0.95844 0.96586 0.92278 0.85678 0.91176 0.90756 0.87603 0.89929 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.35 18.54 20.00 0.37 -13.98 16 2 C 0.25 5.91 13.67 89.44 1.22 7.14 16 3 C -0.01 -0.09 1.12 -53.46 -0.06 -0.15 16 4 C 0.07 1.41 4.90 71.98 0.35 1.76 16 5 O -0.36 -10.18 9.68 -51.42 -0.50 -10.68 16 6 C 0.47 16.29 7.96 71.24 0.57 16.86 16 7 O -0.53 -20.68 15.73 21.98 0.35 -20.33 16 8 C -0.10 -3.64 5.75 29.85 0.17 -3.47 16 9 C 0.00 0.15 3.33 29.85 0.10 0.25 16 10 C -0.54 -30.55 9.66 25.60 0.25 -30.30 16 11 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 12 C 0.01 0.77 5.47 84.65 0.46 1.23 16 13 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 14 Si 0.94 45.18 27.47 68.60 1.88 47.06 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 18 C -0.12 -1.20 7.20 31.12 0.22 -0.98 16 19 C -0.14 -0.95 7.79 31.12 0.24 -0.70 16 20 C -0.10 -0.75 7.21 31.12 0.22 -0.52 16 21 H 0.11 1.70 7.94 -2.39 -0.02 1.68 16 22 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 23 H 0.10 3.81 8.14 -2.38 -0.02 3.79 16 24 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 25 H 0.02 1.13 7.16 -2.39 -0.02 1.11 16 26 H 0.02 0.77 7.53 -2.38 -0.02 0.75 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.13 0.82 7.96 -2.39 -0.02 0.80 16 29 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 30 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.64 8.08 -2.38 -0.02 0.62 16 33 H 0.13 0.33 8.10 -2.39 -0.02 0.31 16 Total: -1.00 -73.55 292.05 7.20 -66.35 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: 1.04 Total: -1.02 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 3.76 Total: -8.88 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: 0.67 Total: -72.50 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.15 Total: -31.01 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -73.55 7.20 -66.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813085826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.747 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds