Wall clock time and date at job start Sun Mar 29 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00040 * 2 1 4 4 N 1.46503 * 109.46910 * 125.00317 * 3 2 1 5 5 C 1.46496 * 120.00183 * 268.15382 * 4 3 2 6 6 C 1.50699 * 109.46778 * 261.13126 * 5 4 3 7 7 H 1.08004 * 120.00600 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00290 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 119.99716 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46821 * 90.00091 * 10 8 6 12 12 H 1.48501 * 109.47015 * 209.99844 * 10 8 6 13 13 H 1.48496 * 109.46884 * 330.00077 * 10 8 6 14 14 C 1.34774 * 119.99792 * 88.15082 * 4 3 2 15 15 O 1.21745 * 120.00155 * 5.08807 * 14 4 3 16 16 C 1.41793 * 120.00144 * 185.07958 * 14 4 3 17 17 C 1.33739 * 125.96717 * 187.95646 * 16 14 4 18 18 O 1.33803 * 114.16380 * 179.97438 * 17 16 14 19 19 C 1.45611 * 110.35608 * 359.97438 * 18 17 16 20 20 C 1.51458 * 125.96327 * 7.93266 * 16 14 4 21 21 H 1.08000 * 119.99583 * 179.97438 * 1 2 3 22 22 H 1.07996 * 120.00158 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.00454 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47020 * 5.00831 * 3 2 1 25 25 H 1.08993 * 109.47160 * 245.00506 * 3 2 1 26 26 H 1.09004 * 109.47129 * 21.12596 * 5 4 3 27 27 H 1.08993 * 109.47308 * 141.12975 * 5 4 3 28 28 H 0.96995 * 120.00003 * 179.97438 * 9 8 6 29 29 H 1.08002 * 122.92017 * 359.70750 * 17 16 14 30 30 H 1.09000 * 110.50109 * 241.34251 * 19 18 17 31 31 H 1.08998 * 110.61118 * 118.72222 * 19 18 17 32 32 H 1.08997 * 110.65487 * 298.47010 * 20 16 14 33 33 H 1.09004 * 110.65658 * 61.57194 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5720 1.9018 2.4133 6 6 3.0857 3.3139 2.5285 7 1 3.6684 3.7436 1.7271 8 6 2.8116 4.0573 3.6569 9 7 3.2603 5.2894 3.7577 10 14 1.8031 3.3143 5.0427 11 1 2.7087 2.6414 6.0082 12 1 1.0491 4.3887 5.7373 13 1 0.8498 2.3221 4.4841 14 6 4.2378 0.8320 0.9929 15 8 4.6199 0.4432 -0.0957 16 6 5.1015 0.7590 2.1150 17 6 6.3972 0.4285 2.0887 18 8 6.9886 0.4349 3.2889 19 6 6.0337 0.8106 4.3220 20 6 4.7181 1.0421 3.5526 21 1 -0.5399 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0897 25 1 2.6212 1.4027 -0.9314 26 1 1.4834 1.9055 2.4687 27 1 2.9752 1.3009 3.2284 28 1 3.0672 5.8125 4.5513 29 1 6.9197 0.1741 1.1783 30 1 6.3513 1.7265 4.8205 31 1 5.9149 0.0046 5.0461 32 1 4.3835 2.0734 3.6653 33 1 3.9479 0.3480 3.8890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814134423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:03 Heat of formation + Delta-G solvation = -5.458622 kcal Electronic energy + Delta-G solvation = -17325.639209 eV Core-core repulsion = 14547.085542 eV Total energy + Delta-G solvation = -2778.553667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58588 -38.74358 -35.60046 -34.01330 -32.33555 -31.76363 -29.40091 -28.18039 -25.91968 -23.10651 -22.27653 -21.47655 -19.65880 -18.44888 -17.16720 -16.48818 -15.91021 -15.69185 -15.45242 -14.68745 -14.35733 -14.18314 -13.29234 -12.89784 -12.76487 -12.56192 -12.40966 -12.23282 -11.64524 -11.46436 -11.16218 -11.06930 -10.97160 -10.84802 -10.30332 -10.08346 -9.66779 -9.33728 -9.00157 -8.76732 -8.01490 -7.53665 -6.27976 -4.27597 1.95377 2.49286 3.08815 3.20048 3.21283 3.68537 3.97717 4.16132 4.18948 5.01028 5.03551 5.27134 5.30877 5.42323 5.46248 5.62719 5.76166 5.93673 6.02023 6.17430 6.25640 6.28795 6.46634 6.67289 6.72143 6.84701 6.90496 6.96318 7.32547 7.39807 7.48543 8.16624 8.39811 8.80301 9.00298 9.29946 10.84249 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.013481 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.316620 B = 2076.433966 C = 3369.816638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.143 3.857 4 N -0.585 5.585 5 C 0.180 3.820 6 C -0.533 4.533 7 H 0.079 0.921 8 C 0.076 3.924 9 N -0.887 5.887 10 Si 0.861 3.139 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.262 1.262 14 C 0.592 3.408 15 O -0.585 6.585 16 C -0.290 4.290 17 C 0.122 3.878 18 O -0.311 6.311 19 C 0.040 3.960 20 C -0.132 4.132 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.186 0.814 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -9.090 0.421 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.314 5.314 5 C 0.059 3.941 6 C -0.571 4.571 7 H 0.097 0.903 8 C -0.128 4.128 9 N -0.524 5.524 10 Si 0.687 3.313 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.186 1.186 14 C 0.386 3.614 15 O -0.469 6.469 16 C -0.295 4.295 17 C 0.054 3.946 18 O -0.222 6.222 19 C -0.034 4.034 20 C -0.167 4.167 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.123 0.877 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.203 0.797 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.218 -9.131 0.117 9.135 hybrid contribution -0.898 -0.062 0.914 1.283 sum -1.115 -9.194 1.032 9.318 Atomic orbital electron populations 1.23771 0.95763 1.01550 1.02318 1.23447 0.96057 0.99482 0.98323 1.20430 0.92173 0.94493 0.90933 1.47679 1.11802 1.58453 1.13463 1.20654 0.96293 0.95112 0.82034 1.21403 1.34556 0.96121 1.05005 0.90312 1.24890 0.95195 0.94660 0.98054 1.69888 1.44822 1.08814 1.28921 0.87081 0.81501 0.79747 0.82950 1.19483 1.20734 1.18626 1.15955 0.81387 0.76983 0.87112 1.90712 1.75921 1.52459 1.27827 1.20710 0.96057 1.16369 0.96322 1.23225 0.92350 0.90507 0.88532 1.86621 1.38315 1.81898 1.15322 1.24224 0.88273 1.00888 0.90041 1.22538 0.95834 1.07713 0.90664 0.88875 0.88472 0.87737 0.89977 0.89757 0.95113 0.92609 0.92257 0.79718 0.89137 0.89975 0.84136 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 14.32 29.01 0.42 -2.29 16 2 C -0.15 -2.48 9.84 -36.02 -0.35 -2.83 16 3 C 0.14 2.65 5.83 -5.19 -0.03 2.62 16 4 N -0.58 -12.40 2.47 -179.80 -0.44 -12.84 16 5 C 0.18 3.97 3.82 -5.20 -0.02 3.95 16 6 C -0.53 -13.73 7.85 -34.44 -0.27 -14.00 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 8 C 0.08 1.98 5.08 -17.82 -0.09 1.89 16 9 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 10 Si 0.86 18.95 27.12 -169.99 -4.61 14.34 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 14 C 0.59 12.88 7.36 -14.90 -0.11 12.77 16 15 O -0.58 -13.51 16.32 5.15 0.08 -13.43 16 16 C -0.29 -5.73 5.84 -104.47 -0.61 -6.34 16 17 C 0.12 2.11 11.26 29.15 0.33 2.44 16 18 O -0.31 -5.16 11.03 -13.44 -0.15 -5.31 16 19 C 0.04 0.62 8.23 37.77 0.31 0.93 16 20 C -0.13 -2.43 4.52 -26.90 -0.12 -2.55 16 21 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 22 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 23 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 24 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 25 H 0.08 1.60 7.41 -51.93 -0.38 1.21 16 26 H 0.03 0.68 7.06 -51.93 -0.37 0.31 16 27 H 0.06 1.18 2.82 -52.88 -0.15 1.03 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.19 2.80 8.00 -52.49 -0.42 2.38 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.14 3.03 4.04 -51.93 -0.21 2.82 16 33 H 0.08 1.32 6.91 -51.93 -0.36 0.96 16 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -29.55 276.14 -4.72 -34.27 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.98 Total: 6.53 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.55 Total: -3.42 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.33 Total: -37.13 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.06 Total: -18.74 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.61 Total: 14.34 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.55 -4.72 -34.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.807 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds