Wall clock time and date at job start Sun Mar 29 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00040 * 2 1 4 4 N 1.46503 * 109.46910 * 125.00317 * 3 2 1 5 5 C 1.46496 * 120.00183 * 268.15382 * 4 3 2 6 6 C 1.50699 * 109.46778 * 261.13126 * 5 4 3 7 7 H 1.08004 * 120.00600 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00290 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 119.99716 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46821 * 90.00091 * 10 8 6 12 12 H 1.48501 * 109.47015 * 209.99844 * 10 8 6 13 13 H 1.48496 * 109.46884 * 330.00077 * 10 8 6 14 14 C 1.34774 * 119.99792 * 88.15082 * 4 3 2 15 15 O 1.21745 * 120.00155 * 5.08807 * 14 4 3 16 16 C 1.41793 * 120.00144 * 185.07958 * 14 4 3 17 17 C 1.33739 * 125.96717 * 187.95646 * 16 14 4 18 18 O 1.33803 * 114.16380 * 179.97438 * 17 16 14 19 19 C 1.45611 * 110.35608 * 359.97438 * 18 17 16 20 20 C 1.51458 * 125.96327 * 7.93266 * 16 14 4 21 21 H 1.08000 * 119.99583 * 179.97438 * 1 2 3 22 22 H 1.07996 * 120.00158 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.00454 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47020 * 5.00831 * 3 2 1 25 25 H 1.08993 * 109.47160 * 245.00506 * 3 2 1 26 26 H 1.09004 * 109.47129 * 21.12596 * 5 4 3 27 27 H 1.08993 * 109.47308 * 141.12975 * 5 4 3 28 28 H 0.96995 * 120.00003 * 179.97438 * 9 8 6 29 29 H 1.08002 * 122.92017 * 359.70750 * 17 16 14 30 30 H 1.09000 * 110.50109 * 241.34251 * 19 18 17 31 31 H 1.08998 * 110.61118 * 118.72222 * 19 18 17 32 32 H 1.08997 * 110.65487 * 298.47010 * 20 16 14 33 33 H 1.09004 * 110.65658 * 61.57194 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5720 1.9018 2.4133 6 6 3.0857 3.3139 2.5285 7 1 3.6684 3.7436 1.7271 8 6 2.8116 4.0573 3.6569 9 7 3.2603 5.2894 3.7577 10 14 1.8031 3.3143 5.0427 11 1 2.7087 2.6414 6.0082 12 1 1.0491 4.3887 5.7373 13 1 0.8498 2.3221 4.4841 14 6 4.2378 0.8320 0.9929 15 8 4.6199 0.4432 -0.0957 16 6 5.1015 0.7590 2.1150 17 6 6.3972 0.4285 2.0887 18 8 6.9886 0.4349 3.2889 19 6 6.0337 0.8106 4.3220 20 6 4.7181 1.0421 3.5526 21 1 -0.5399 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0897 25 1 2.6212 1.4027 -0.9314 26 1 1.4834 1.9055 2.4687 27 1 2.9752 1.3009 3.2284 28 1 3.0672 5.8125 4.5513 29 1 6.9197 0.1741 1.1783 30 1 6.3513 1.7265 4.8205 31 1 5.9149 0.0046 5.0461 32 1 4.3835 2.0734 3.6653 33 1 3.9479 0.3480 3.8890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814134423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:03 Heat of formation + Delta-G solvation = -24.843619 kcal Electronic energy + Delta-G solvation = -17326.479805 eV Core-core repulsion = 14547.085542 eV Total energy + Delta-G solvation = -2779.394263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03472 -40.29780 -37.24504 -35.52237 -34.18841 -33.15645 -30.82494 -29.93091 -27.39429 -24.90064 -23.65800 -23.03502 -20.92841 -19.93119 -19.12113 -18.10156 -17.34075 -17.16484 -16.93756 -16.26707 -15.89863 -15.75853 -14.85887 -14.53266 -14.32142 -14.05441 -13.94837 -13.72651 -13.07995 -13.04470 -12.66602 -12.61500 -12.40601 -12.26731 -11.96014 -11.81827 -11.49208 -10.93959 -10.74731 -10.30173 -9.61139 -9.07251 -8.29314 -6.34543 0.47568 1.28537 1.38208 1.42713 1.51498 2.32580 2.33730 2.40923 2.62312 3.03780 3.64930 3.95956 4.02036 4.11988 4.16575 4.27601 4.37952 4.63405 4.71873 4.74080 4.78336 4.91837 4.94460 5.05847 5.23302 5.36782 5.46941 5.61510 5.66720 5.88752 6.02752 6.22693 6.62349 6.72303 7.24068 7.38486 8.86995 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.013481 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.316620 B = 2076.433966 C = 3369.816638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.139 3.861 4 N -0.593 5.593 5 C 0.190 3.810 6 C -0.528 4.528 7 H 0.022 0.978 8 C 0.025 3.975 9 N -0.940 5.940 10 Si 0.927 3.073 11 H -0.245 1.245 12 H -0.287 1.287 13 H -0.242 1.242 14 C 0.584 3.416 15 O -0.610 6.610 16 C -0.335 4.335 17 C 0.150 3.850 18 O -0.307 6.307 19 C 0.042 3.958 20 C -0.131 4.131 21 H 0.121 0.879 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.269 0.731 29 H 0.205 0.795 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -11.269 2.083 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.017 3.983 4 N -0.321 5.321 5 C 0.069 3.931 6 C -0.567 4.567 7 H 0.040 0.960 8 C -0.174 4.174 9 N -0.580 5.580 10 Si 0.749 3.251 11 H -0.169 1.169 12 H -0.213 1.213 13 H -0.165 1.165 14 C 0.379 3.621 15 O -0.497 6.497 16 C -0.339 4.339 17 C 0.082 3.918 18 O -0.217 6.217 19 C -0.032 4.032 20 C -0.168 4.168 21 H 0.139 0.861 22 H 0.123 0.877 23 H 0.119 0.881 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.143 -11.328 1.775 11.523 hybrid contribution -0.544 0.664 0.310 0.912 sum -1.687 -10.665 2.085 10.997 Atomic orbital electron populations 1.24044 0.94786 1.03222 0.98171 1.23166 0.96755 0.97736 1.02094 1.20517 0.91885 0.96295 0.89612 1.47779 1.12332 1.58209 1.13797 1.20518 0.96277 0.93031 0.83270 1.21392 1.33792 0.98006 1.03490 0.95951 1.25721 0.96219 0.94715 1.00770 1.70054 1.46986 1.10840 1.30097 0.86024 0.80283 0.79205 0.79572 1.16881 1.21334 1.16504 1.16307 0.81690 0.76611 0.87481 1.90675 1.76332 1.53871 1.28854 1.20771 0.97052 1.19547 0.96544 1.23542 0.91555 0.87431 0.89319 1.86634 1.38611 1.81109 1.15298 1.24399 0.86186 1.02798 0.89794 1.22392 0.97951 1.05911 0.90513 0.86093 0.87709 0.88138 0.90021 0.91258 0.94495 0.90591 0.92186 0.77855 0.88645 0.86067 0.87442 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 14.32 67.78 0.97 -3.11 16 2 C -0.18 -5.56 9.84 25.65 0.25 -5.30 16 3 C 0.14 5.26 5.83 85.63 0.50 5.76 16 4 N -0.59 -25.44 2.47 -840.96 -2.08 -27.52 16 5 C 0.19 8.31 3.82 85.63 0.33 8.63 16 6 C -0.53 -28.01 7.85 25.60 0.20 -27.81 16 7 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 8 C 0.02 1.31 5.08 84.66 0.43 1.74 16 9 N -0.94 -54.71 13.96 21.45 0.30 -54.41 16 10 Si 0.93 38.00 27.12 68.60 1.86 39.86 16 11 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 12 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 14 C 0.58 25.77 7.36 85.12 0.63 26.40 16 15 O -0.61 -28.82 16.32 -4.49 -0.07 -28.90 16 16 C -0.33 -13.03 5.84 -19.77 -0.12 -13.14 16 17 C 0.15 4.99 11.26 66.80 0.75 5.74 16 18 O -0.31 -9.38 11.03 -71.01 -0.78 -10.16 16 19 C 0.04 1.17 8.23 72.38 0.60 1.76 16 20 C -0.13 -4.64 4.52 30.48 0.14 -4.50 16 21 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 22 H 0.10 2.45 7.84 -2.91 -0.02 2.43 16 23 H 0.10 3.21 8.06 -2.91 -0.02 3.18 16 24 H 0.08 2.99 7.71 -2.39 -0.02 2.97 16 25 H 0.07 2.75 7.41 -2.39 -0.02 2.74 16 26 H 0.04 1.57 7.06 -2.38 -0.02 1.55 16 27 H 0.08 3.07 2.82 -3.28 -0.01 3.06 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.20 5.85 8.00 -2.91 -0.02 5.83 16 30 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.11 4.57 4.04 -2.39 -0.01 4.56 16 33 H 0.09 2.89 6.91 -2.39 -0.02 2.87 16 Total: -1.00 -66.16 276.14 4.95 -61.21 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.05 Total: 23.74 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.68 Total: -3.83 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.78 Total: -81.93 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.86 Total: -39.06 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.86 Total: 39.86 kcal Total: -66.16 4.95 -61.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.369 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds