Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.39679 * 120.00084 * 179.97438 * 10 9 7 12 12 C 1.38937 * 120.07323 * 359.72469 * 11 10 9 13 13 C 1.38076 * 119.92643 * 179.79041 * 12 11 10 14 14 C 1.38309 * 120.07207 * 0.48669 * 13 12 11 15 15 C 1.38262 * 120.15138 * 359.74770 * 14 13 12 16 16 C 1.50707 * 119.96497 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.47088 * 160.01848 * 16 15 14 18 18 O 1.42895 * 109.46957 * 40.01673 * 16 15 14 19 19 C 1.52999 * 109.46834 * 280.01970 * 16 15 14 20 20 O 1.42899 * 109.47023 * 185.00226 * 19 16 15 21 21 C 1.38128 * 120.07476 * 0.02562 * 15 14 13 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 26 26 H 1.08005 * 120.03665 * 0.02562 * 12 11 10 27 27 H 1.07992 * 119.96665 * 180.20818 * 13 12 11 28 28 H 1.08006 * 119.92774 * 179.72335 * 14 13 12 29 29 H 0.96704 * 114.00413 * 300.00328 * 18 16 15 30 30 H 1.09007 * 109.47434 * 304.99855 * 19 16 15 31 31 H 1.09005 * 109.47227 * 64.99711 * 19 16 15 32 32 H 0.96701 * 113.99767 * 180.02562 * 20 19 16 33 33 H 1.07998 * 120.03638 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3729 -2.8308 -0.0001 12 6 6.2772 -1.7760 -0.0059 13 6 7.6341 -2.0319 -0.0015 14 6 8.0933 -3.3365 -0.0017 15 6 7.1962 -4.3885 -0.0009 16 6 7.7012 -5.8085 -0.0005 17 1 6.9132 -6.4743 0.3513 18 8 8.8333 -5.9111 0.8655 19 6 8.1080 -6.2054 -1.4209 20 8 8.4766 -7.5859 -1.4427 21 6 5.8375 -4.1396 -0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.3694 -3.3127 -0.0009 26 1 5.9192 -0.7570 -0.0099 27 1 8.3375 -1.2125 -0.0026 28 1 9.1552 -3.5340 -0.0028 29 1 9.5749 -5.3445 0.6122 30 1 7.2694 -6.0426 -2.0980 31 1 8.9553 -5.5980 -1.7394 32 1 8.7470 -7.9071 -2.3138 33 1 5.1373 -4.9619 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819463360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = -79.119934 kcal Electronic energy + Delta-G solvation = -16102.948479 eV Core-core repulsion = 13321.200618 eV Total energy + Delta-G solvation = -2781.747861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60579 -37.75584 -36.01492 -34.92270 -32.63546 -31.53672 -29.76382 -27.95997 -26.76067 -23.63146 -22.27838 -21.92953 -20.03149 -17.98455 -17.38453 -16.84193 -16.12568 -15.84598 -15.37292 -15.04960 -14.25458 -14.12709 -13.59366 -13.48319 -13.24930 -12.97070 -12.90954 -12.47551 -12.19374 -11.47369 -11.38651 -10.97430 -10.85368 -10.73122 -10.28653 -10.07446 -10.03932 -9.58064 -9.54150 -8.76980 -8.55040 -6.81958 -6.27748 -4.30172 1.62660 1.95796 3.17061 3.24854 3.26361 3.85352 4.14769 4.23577 4.31715 4.44946 4.88608 4.97623 5.04177 5.06518 5.19842 5.35681 5.42458 5.63906 5.71824 5.88548 6.15390 6.22631 6.55208 6.70492 6.77580 6.87064 6.92509 7.18186 7.32646 7.38937 7.56633 7.86455 8.32220 8.50306 8.74769 9.31105 10.84705 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045999 B = 0.004756 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.566487 B = 5886.222050 C = 6275.379216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.720 5.720 11 C 0.235 3.765 12 C -0.202 4.202 13 C -0.066 4.066 14 C -0.193 4.193 15 C -0.073 4.073 16 C 0.153 3.847 17 H 0.110 0.890 18 O -0.549 6.549 19 C 0.049 3.951 20 O -0.567 6.567 21 C -0.199 4.199 22 H 0.268 0.732 23 H 0.014 0.986 24 H 0.019 0.981 25 H 0.398 0.602 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.371 0.629 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.377 0.623 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.746 -7.529 -3.233 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.343 5.343 11 C 0.125 3.875 12 C -0.225 4.225 13 C -0.085 4.085 14 C -0.214 4.214 15 C -0.075 4.075 16 C 0.094 3.906 17 H 0.128 0.872 18 O -0.354 6.354 19 C -0.029 4.029 20 O -0.372 6.372 21 C -0.223 4.223 22 H 0.078 0.922 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.232 0.768 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.218 0.782 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.224 0.776 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.908 -7.546 -2.286 17.755 hybrid contribution 0.408 1.165 -0.984 1.579 sum 16.316 -6.381 -3.269 17.822 Atomic orbital electron populations 1.69881 1.06239 1.27443 1.49270 1.24825 0.94813 0.99142 0.93955 0.86797 0.80415 0.83360 0.78883 1.19840 1.20782 1.18808 1.21058 0.88549 0.95234 1.53194 0.90331 1.19509 0.95754 0.79162 0.95617 1.45234 1.01832 1.09677 1.77555 1.18016 0.85365 0.92940 0.91155 1.20746 0.92783 0.98449 1.10565 1.20750 0.94756 0.96111 0.96894 1.20354 0.98108 0.92428 1.10513 1.19872 0.93516 0.94497 0.99576 1.20713 0.88868 0.92676 0.88338 0.87197 1.86638 1.26111 1.68323 1.54303 1.22933 0.99307 0.82607 0.98018 1.86533 1.89368 1.25441 1.35847 1.20323 0.94731 0.95007 1.12192 0.92198 0.96836 0.96362 0.76790 0.86087 0.86598 0.87362 0.78160 0.92350 0.93160 0.77639 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.54 -14.73 9.83 -34.44 -0.34 -15.07 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.16 3.73 -5.19 -0.02 5.14 16 10 N -0.72 -14.51 5.73 -59.80 -0.34 -14.85 16 11 C 0.23 4.23 6.65 -83.78 -0.56 3.67 16 12 C -0.20 -3.47 9.31 -39.38 -0.37 -3.84 16 13 C -0.07 -0.95 10.04 -39.61 -0.40 -1.34 16 14 C -0.19 -2.53 9.32 -39.55 -0.37 -2.90 16 15 C -0.07 -1.02 4.97 -104.65 -0.52 -1.54 16 16 C 0.15 1.91 3.49 -27.88 -0.10 1.81 16 17 H 0.11 1.44 8.00 -51.93 -0.42 1.02 16 18 O -0.55 -7.04 13.15 -40.08 -0.53 -7.57 16 19 C 0.05 0.51 6.66 37.16 0.25 0.76 16 20 O -0.57 -5.99 13.62 -40.08 -0.55 -6.53 16 21 C -0.20 -3.12 9.52 -39.38 -0.37 -3.50 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.01 0.32 7.36 -51.93 -0.38 -0.06 16 24 H 0.02 0.44 7.02 -51.93 -0.36 0.07 16 25 H 0.40 7.65 8.33 -40.82 -0.34 7.31 16 26 H 0.12 2.14 6.74 -52.48 -0.35 1.79 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.10 6.78 -52.48 -0.36 0.74 16 29 H 0.37 3.42 7.50 45.56 0.34 3.76 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.38 2.13 9.12 45.56 0.42 2.54 16 33 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -31.52 283.05 -6.66 -38.18 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -2.72 Total: 10.94 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.89 Total: -14.78 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.43 Total: -40.34 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.07 Total: -14.10 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.52 -6.66 -38.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819463360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.944 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds