Wall clock time and date at job start Sun Mar 29 2020 21:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.39679 * 120.00084 * 179.97438 * 10 9 7 12 12 C 1.38937 * 120.07323 * 359.72469 * 11 10 9 13 13 C 1.38076 * 119.92643 * 179.79041 * 12 11 10 14 14 C 1.38309 * 120.07207 * 0.48669 * 13 12 11 15 15 C 1.38262 * 120.15138 * 359.74770 * 14 13 12 16 16 C 1.50707 * 119.96497 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.47088 * 160.01848 * 16 15 14 18 18 O 1.42895 * 109.46957 * 40.01673 * 16 15 14 19 19 C 1.52999 * 109.46834 * 280.01970 * 16 15 14 20 20 O 1.42899 * 109.47023 * 185.00226 * 19 16 15 21 21 C 1.38128 * 120.07476 * 0.02562 * 15 14 13 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 26 26 H 1.08005 * 120.03665 * 0.02562 * 12 11 10 27 27 H 1.07992 * 119.96665 * 180.20818 * 13 12 11 28 28 H 1.08006 * 119.92774 * 179.72335 * 14 13 12 29 29 H 0.96704 * 114.00413 * 300.00328 * 18 16 15 30 30 H 1.09007 * 109.47434 * 304.99855 * 19 16 15 31 31 H 1.09005 * 109.47227 * 64.99711 * 19 16 15 32 32 H 0.96701 * 113.99767 * 180.02562 * 20 19 16 33 33 H 1.07998 * 120.03638 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3729 -2.8308 -0.0001 12 6 6.2772 -1.7760 -0.0059 13 6 7.6341 -2.0319 -0.0015 14 6 8.0933 -3.3365 -0.0017 15 6 7.1962 -4.3885 -0.0009 16 6 7.7012 -5.8085 -0.0005 17 1 6.9132 -6.4743 0.3513 18 8 8.8333 -5.9111 0.8655 19 6 8.1080 -6.2054 -1.4209 20 8 8.4766 -7.5859 -1.4427 21 6 5.8375 -4.1396 -0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.3694 -3.3127 -0.0009 26 1 5.9192 -0.7570 -0.0099 27 1 8.3375 -1.2125 -0.0026 28 1 9.1552 -3.5340 -0.0028 29 1 9.5749 -5.3445 0.6122 30 1 7.2694 -6.0426 -2.0980 31 1 8.9553 -5.5980 -1.7394 32 1 8.7470 -7.9071 -2.3138 33 1 5.1373 -4.9619 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819463360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:28 Heat of formation + Delta-G solvation = -105.146525 kcal Electronic energy + Delta-G solvation = -16104.077076 eV Core-core repulsion = 13321.200618 eV Total energy + Delta-G solvation = -2782.876459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74208 -38.80017 -36.98427 -36.30530 -34.60139 -32.62733 -31.31409 -28.99632 -28.37933 -24.88604 -23.61125 -23.33451 -21.28144 -19.46675 -18.63609 -17.90595 -17.39347 -17.01935 -16.55180 -16.50611 -15.73214 -15.35494 -15.15444 -14.86663 -14.41170 -14.39309 -13.94960 -13.87664 -13.51719 -12.97114 -12.75738 -12.56465 -12.29076 -11.93203 -11.79203 -11.60777 -11.11528 -11.04403 -10.96496 -10.75485 -9.71369 -8.40843 -8.23089 -6.49144 0.45155 0.76617 1.33633 1.35072 1.46228 2.27470 2.73538 2.87392 2.95217 3.24524 3.55271 3.98730 4.00488 4.18554 4.19885 4.35235 4.52784 4.59368 4.61509 4.70602 4.72233 5.02736 5.05289 5.10741 5.29580 5.47844 5.62333 5.70806 5.87671 6.13172 6.49261 6.63565 6.79480 6.89443 6.99387 7.19405 8.75078 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045999 B = 0.004756 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.566487 B = 5886.222050 C = 6275.379216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.247 1.247 7 C -0.553 4.553 8 H 0.043 0.957 9 C 0.240 3.760 10 N -0.735 5.735 11 C 0.206 3.794 12 C -0.222 4.222 13 C -0.064 4.064 14 C -0.179 4.179 15 C -0.071 4.071 16 C 0.155 3.845 17 H 0.097 0.903 18 O -0.562 6.562 19 C 0.055 3.945 20 O -0.586 6.586 21 C -0.205 4.205 22 H 0.272 0.728 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.396 0.604 26 H 0.110 0.890 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.387 0.613 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.164 -7.179 -3.620 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.171 1.171 7 C -0.590 4.590 8 H 0.061 0.939 9 C 0.116 3.884 10 N -0.360 5.360 11 C 0.100 3.900 12 C -0.246 4.246 13 C -0.083 4.083 14 C -0.199 4.199 15 C -0.072 4.072 16 C 0.096 3.904 17 H 0.114 0.886 18 O -0.370 6.370 19 C -0.023 4.023 20 O -0.395 6.395 21 C -0.228 4.228 22 H 0.081 0.919 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.230 0.770 26 H 0.128 0.872 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.237 0.763 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.392 -7.229 -2.692 20.870 hybrid contribution -0.549 0.888 -0.862 1.354 sum 18.843 -6.342 -3.554 20.196 Atomic orbital electron populations 1.70023 1.08189 1.28726 1.50827 1.25800 0.95659 1.03345 0.93362 0.85687 0.79509 0.78064 0.79593 1.18649 1.20302 1.17051 1.21346 0.90835 0.94092 1.52773 0.93925 1.19114 0.92874 0.81141 0.95311 1.44979 1.03035 1.08156 1.79874 1.18253 0.84290 0.94291 0.93170 1.20896 0.94212 0.97732 1.11717 1.21106 0.93879 0.97735 0.95549 1.20832 1.00016 0.91537 1.07528 1.20103 0.92773 0.95841 0.98453 1.20632 0.88722 0.91344 0.89746 0.88551 1.86619 1.26678 1.68983 1.54755 1.22823 1.00213 0.82977 0.96288 1.86472 1.89516 1.25559 1.37954 1.20486 0.96014 0.94290 1.12015 0.91908 0.96655 0.96740 0.77004 0.87186 0.83536 0.83427 0.76279 0.92226 0.91023 0.75195 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 2 C 0.02 1.00 5.47 84.66 0.46 1.47 16 3 Si 0.95 42.34 27.47 68.60 1.88 44.22 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.55 -31.10 9.83 25.60 0.25 -30.85 16 8 H 0.04 2.62 7.84 -2.91 -0.02 2.60 16 9 C 0.24 11.29 3.73 85.63 0.32 11.61 16 10 N -0.73 -30.44 5.73 -343.12 -1.96 -32.41 16 11 C 0.21 7.38 6.65 38.21 0.25 7.63 16 12 C -0.22 -7.34 9.31 22.40 0.21 -7.14 16 13 C -0.06 -1.62 10.04 22.25 0.22 -1.39 16 14 C -0.18 -3.97 9.32 22.29 0.21 -3.76 16 15 C -0.07 -1.78 4.97 -19.88 -0.10 -1.88 16 16 C 0.15 3.47 3.49 29.85 0.10 3.57 16 17 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 18 O -0.56 -12.66 13.15 -144.34 -1.90 -14.56 16 19 C 0.05 0.96 6.66 71.98 0.48 1.44 16 20 O -0.59 -10.83 13.62 -144.34 -1.97 -12.79 16 21 C -0.20 -6.28 9.52 22.40 0.21 -6.06 16 22 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 23 H 0.02 0.73 7.36 -2.39 -0.02 0.71 16 24 H 0.01 0.70 7.02 -2.39 -0.02 0.69 16 25 H 0.40 16.09 8.33 -92.71 -0.77 15.31 16 26 H 0.11 3.81 6.74 -2.91 -0.02 3.79 16 27 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.15 2.12 6.78 -2.91 -0.02 2.10 16 29 H 0.39 5.46 7.50 -74.05 -0.56 4.90 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.40 3.37 9.12 -74.06 -0.68 2.70 16 33 H 0.12 3.50 8.04 -2.91 -0.02 3.48 16 Total: -1.00 -69.21 283.05 -1.93 -71.15 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.91 Total: 26.43 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 2.63 Total: -25.35 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -1.67 Total: -89.09 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -3.87 Total: -27.35 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -69.21 -1.93 -71.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819463360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.001 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds