Wall clock time and date at job start Sun Mar 29 2020 21:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36873 * 119.99789 * 2 1 4 4 H 1.08006 * 119.99560 * 137.57526 * 3 2 1 5 5 C 1.39041 * 120.00039 * 317.56809 * 3 2 1 6 6 N 1.31362 * 120.00200 * 44.65255 * 5 3 2 7 7 Si 1.86799 * 120.00181 * 224.64726 * 5 3 2 8 8 H 1.48508 * 109.47128 * 60.00463 * 7 5 3 9 9 H 1.48496 * 109.47196 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47285 * 300.00619 * 7 5 3 11 11 C 1.34780 * 119.99899 * 180.02562 * 2 1 3 12 12 O 1.21591 * 119.99954 * 187.78299 * 11 2 1 13 13 C 1.47727 * 120.00047 * 7.78696 * 11 2 1 14 14 C 1.39646 * 120.14895 * 138.98974 * 13 11 2 15 15 C 1.37938 * 119.84490 * 180.02562 * 14 13 11 16 16 C 1.38376 * 120.14792 * 0.02562 * 15 14 13 17 17 C 1.50709 * 119.84265 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.47055 * 90.00248 * 17 16 15 19 19 C 1.38372 * 120.31037 * 0.23452 * 16 15 14 20 20 C 1.37935 * 120.14890 * 359.48379 * 19 16 15 21 21 H 1.08997 * 109.46693 * 278.65574 * 1 2 3 22 22 H 1.08996 * 109.47121 * 38.65753 * 1 2 3 23 23 H 1.08999 * 109.46651 * 158.65691 * 1 2 3 24 24 H 0.97003 * 120.00428 * 179.97438 * 6 5 3 25 25 H 1.08004 * 120.07783 * 0.02562 * 14 13 11 26 26 H 1.08002 * 119.92478 * 180.02562 * 15 14 13 27 27 H 1.08998 * 109.46855 * 330.00268 * 17 16 15 28 28 H 1.08996 * 109.46518 * 210.00017 * 17 16 15 29 29 H 1.07998 * 119.92720 * 179.72264 * 19 16 15 30 30 H 1.08000 * 120.07942 * 180.23587 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0173 1.3078 0.6310 5 6 1.7272 2.2318 -0.8124 6 7 0.4516 2.5382 -0.8792 7 14 2.9741 3.2021 -1.8090 8 1 3.6825 2.2880 -2.7407 9 1 2.2743 4.2564 -2.5860 10 1 3.9571 3.8336 -0.8923 11 6 2.1389 -1.1672 -0.0005 12 8 3.3464 -1.1722 0.1421 13 6 1.4105 -2.4406 -0.1744 14 6 1.9431 -3.4489 -0.9805 15 6 1.2574 -4.6352 -1.1390 16 6 0.0442 -4.8271 -0.5017 17 6 -0.6995 -6.1257 -0.6801 18 9 -0.3013 -7.0309 0.3095 19 6 -0.4920 -3.8302 0.2942 20 6 0.1858 -2.6412 0.4660 21 1 -0.3632 0.1547 1.0160 22 1 -0.3633 0.8025 -0.6419 23 1 -0.3632 -0.9572 -0.3740 24 1 0.1571 3.2685 -1.4457 25 1 2.8897 -3.3002 -1.4788 26 1 1.6683 -5.4160 -1.7618 27 1 -0.4759 -6.5404 -1.6630 28 1 -1.7712 -5.9450 -0.5971 29 1 -1.4414 -3.9849 0.7850 30 1 -0.2318 -1.8654 1.0905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824862898.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:54 Heat of formation + Delta-G solvation = -39.489760 kcal Electronic energy + Delta-G solvation = -16247.096236 eV Core-core repulsion = 13343.606563 eV Total energy + Delta-G solvation = -2903.489673 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.63756 -39.54281 -37.57493 -34.75002 -32.51050 -31.56103 -30.69412 -27.04843 -26.19393 -24.43813 -22.38835 -21.71954 -19.49288 -17.20352 -16.44013 -16.29664 -15.92993 -15.84082 -14.97771 -14.48135 -14.33628 -14.09164 -13.72698 -13.38838 -13.13438 -12.39976 -12.29627 -11.88146 -11.64753 -11.37904 -11.22481 -10.95882 -10.82555 -10.61983 -10.42049 -10.22738 -8.72664 -8.65764 -8.59330 -8.35910 -7.70727 -6.71209 -3.92830 1.27241 1.64813 3.15073 3.24642 3.32442 3.64290 4.03176 4.28639 4.54280 4.61761 4.71013 4.84700 4.93075 5.20362 5.24323 5.60175 5.61316 5.69098 5.82957 6.10353 6.24301 6.32770 6.56486 6.62947 6.64679 6.83716 7.12728 7.16852 7.55572 8.23813 8.45581 9.07039 9.27101 9.93965 10.31648 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.048542 B = 0.005859 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.685688 B = 4777.811785 C = 5026.962853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.431 5.431 3 C -0.352 4.352 4 H 0.097 0.903 5 C 0.078 3.922 6 N -0.821 5.821 7 Si 0.888 3.112 8 H -0.270 1.270 9 H -0.285 1.285 10 H -0.269 1.269 11 C 0.481 3.519 12 O -0.579 6.579 13 C -0.080 4.080 14 C -0.083 4.083 15 C -0.105 4.105 16 C -0.144 4.144 17 C 0.110 3.890 18 F -0.215 7.215 19 C -0.106 4.106 20 C -0.106 4.106 21 H 0.036 0.964 22 H 0.115 0.885 23 H 0.050 0.950 24 H 0.274 0.726 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 -10.944 -2.108 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.149 5.149 3 C -0.477 4.477 4 H 0.115 0.885 5 C -0.133 4.133 6 N -0.454 5.454 7 Si 0.712 3.288 8 H -0.195 1.195 9 H -0.211 1.211 10 H -0.193 1.193 11 C 0.270 3.730 12 O -0.464 6.464 13 C -0.084 4.084 14 C -0.103 4.103 15 C -0.123 4.123 16 C -0.145 4.145 17 C 0.055 3.945 18 F -0.196 7.196 19 C -0.124 4.124 20 C -0.124 4.124 21 H 0.054 0.946 22 H 0.133 0.867 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.949 -10.758 -2.074 12.467 hybrid contribution 0.361 0.563 -0.416 0.788 sum -5.588 -10.195 -2.490 11.890 Atomic orbital electron populations 1.22958 0.82512 1.02914 1.01767 1.43320 1.05026 1.04599 1.61946 1.19060 1.12535 0.90195 1.25879 0.88489 1.25525 0.95671 0.96742 0.95326 1.70023 1.16520 1.26080 1.32729 0.86640 0.82567 0.78462 0.81099 1.19485 1.21113 1.19334 1.18078 0.87117 0.83147 0.84618 1.90616 1.14069 1.86683 1.55081 1.20477 0.94872 0.95783 0.97227 1.21164 0.99577 0.92100 0.97417 1.20888 0.94309 0.97291 0.99827 1.20191 0.97032 0.96138 1.01143 1.20769 0.98756 0.85192 0.89763 1.92799 1.92846 1.68975 1.64977 1.20900 1.00048 0.93083 0.98409 1.21674 0.94170 0.97210 0.99378 0.94562 0.86698 0.93178 0.91503 0.85201 0.85883 0.90155 0.90110 0.85875 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 8.58 59.85 0.51 1.43 16 2 N -0.43 -11.18 2.99 -123.32 -0.37 -11.55 16 3 C -0.35 -9.84 8.73 -15.00 -0.13 -9.97 16 4 H 0.10 2.87 7.94 -52.48 -0.42 2.45 16 5 C 0.08 2.03 5.32 -17.45 -0.09 1.94 16 6 N -0.82 -20.89 10.81 55.50 0.60 -20.29 16 7 Si 0.89 20.25 29.69 -169.99 -5.05 15.21 16 8 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.48 12.24 7.27 -12.38 -0.09 12.15 16 12 O -0.58 -16.70 16.85 5.29 0.09 -16.61 16 13 C -0.08 -1.63 5.30 -104.97 -0.56 -2.19 16 14 C -0.08 -1.50 9.65 -39.17 -0.38 -1.88 16 15 C -0.10 -1.53 9.68 -39.64 -0.38 -1.91 16 16 C -0.14 -1.97 5.60 -104.52 -0.59 -2.55 16 17 C 0.11 1.15 7.67 36.01 0.28 1.42 16 18 F -0.21 -2.81 17.34 2.25 0.04 -2.77 16 19 C -0.11 -1.52 9.68 -39.64 -0.38 -1.90 16 20 C -0.11 -1.83 7.36 -39.17 -0.29 -2.11 16 21 H 0.04 0.76 7.79 -51.93 -0.40 0.36 16 22 H 0.12 2.74 5.14 -51.93 -0.27 2.47 16 23 H 0.05 0.96 4.58 -51.93 -0.24 0.73 16 24 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 25 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.14 2.30 5.74 -52.49 -0.30 2.00 16 LS Contribution 263.69 15.07 3.97 3.97 Total: -1.00 -30.91 263.69 -5.68 -36.59 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -2.87 Total: 1.04 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.10 Total: -5.59 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.23 Total: -31.84 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.09 Total: -16.61 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.05 Total: 15.21 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.91 -5.68 -36.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824862898.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.898 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds