Wall clock time and date at job start Sun Mar 29 2020 21:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36873 * 119.99789 * 2 1 4 4 H 1.08006 * 119.99560 * 137.57526 * 3 2 1 5 5 C 1.39041 * 120.00039 * 317.56809 * 3 2 1 6 6 N 1.31362 * 120.00200 * 44.65255 * 5 3 2 7 7 Si 1.86799 * 120.00181 * 224.64726 * 5 3 2 8 8 H 1.48508 * 109.47128 * 60.00463 * 7 5 3 9 9 H 1.48496 * 109.47196 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47285 * 300.00619 * 7 5 3 11 11 C 1.34780 * 119.99899 * 180.02562 * 2 1 3 12 12 O 1.21591 * 119.99954 * 187.78299 * 11 2 1 13 13 C 1.47727 * 120.00047 * 7.78696 * 11 2 1 14 14 C 1.39646 * 120.14895 * 138.98974 * 13 11 2 15 15 C 1.37938 * 119.84490 * 180.02562 * 14 13 11 16 16 C 1.38376 * 120.14792 * 0.02562 * 15 14 13 17 17 C 1.50709 * 119.84265 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.47055 * 90.00248 * 17 16 15 19 19 C 1.38372 * 120.31037 * 0.23452 * 16 15 14 20 20 C 1.37935 * 120.14890 * 359.48379 * 19 16 15 21 21 H 1.08997 * 109.46693 * 278.65574 * 1 2 3 22 22 H 1.08996 * 109.47121 * 38.65753 * 1 2 3 23 23 H 1.08999 * 109.46651 * 158.65691 * 1 2 3 24 24 H 0.97003 * 120.00428 * 179.97438 * 6 5 3 25 25 H 1.08004 * 120.07783 * 0.02562 * 14 13 11 26 26 H 1.08002 * 119.92478 * 180.02562 * 15 14 13 27 27 H 1.08998 * 109.46855 * 330.00268 * 17 16 15 28 28 H 1.08996 * 109.46518 * 210.00017 * 17 16 15 29 29 H 1.07998 * 119.92720 * 179.72264 * 19 16 15 30 30 H 1.08000 * 120.07942 * 180.23587 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0173 1.3078 0.6310 5 6 1.7272 2.2318 -0.8124 6 7 0.4516 2.5382 -0.8792 7 14 2.9741 3.2021 -1.8090 8 1 3.6825 2.2880 -2.7407 9 1 2.2743 4.2564 -2.5860 10 1 3.9571 3.8336 -0.8923 11 6 2.1389 -1.1672 -0.0005 12 8 3.3464 -1.1722 0.1421 13 6 1.4105 -2.4406 -0.1744 14 6 1.9431 -3.4489 -0.9805 15 6 1.2574 -4.6352 -1.1390 16 6 0.0442 -4.8271 -0.5017 17 6 -0.6995 -6.1257 -0.6801 18 9 -0.3013 -7.0309 0.3095 19 6 -0.4920 -3.8302 0.2942 20 6 0.1858 -2.6412 0.4660 21 1 -0.3632 0.1547 1.0160 22 1 -0.3633 0.8025 -0.6419 23 1 -0.3632 -0.9572 -0.3740 24 1 0.1571 3.2685 -1.4457 25 1 2.8897 -3.3002 -1.4788 26 1 1.6683 -5.4160 -1.7618 27 1 -0.4759 -6.5404 -1.6630 28 1 -1.7712 -5.9450 -0.5971 29 1 -1.4414 -3.9849 0.7850 30 1 -0.2318 -1.8654 1.0905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824862898.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:53 Heat of formation + Delta-G solvation = -58.489962 kcal Electronic energy + Delta-G solvation = -16247.920147 eV Core-core repulsion = 13343.606563 eV Total energy + Delta-G solvation = -2904.313583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.52611 -41.11905 -39.18496 -36.75570 -34.26253 -33.04153 -32.01025 -28.57048 -27.80082 -26.17234 -23.66652 -23.09310 -21.13612 -19.15865 -18.10804 -17.51800 -17.00580 -16.79935 -16.68472 -16.19616 -16.05720 -15.44349 -15.20519 -14.90497 -14.44542 -14.07351 -13.87792 -13.57894 -13.45324 -13.12432 -12.60970 -12.41697 -12.16018 -12.12664 -11.93633 -11.70394 -10.65173 -10.54996 -9.95613 -9.81856 -9.67662 -8.70249 -6.01705 -0.05397 0.39646 1.28873 1.38572 1.47366 1.99701 2.16750 2.60111 2.77348 3.09162 3.56674 3.78723 3.96582 4.00161 4.18569 4.24651 4.41684 4.58199 4.64671 4.76030 4.84620 4.90950 5.05339 5.20889 5.28393 5.44472 5.49331 5.59192 5.91637 6.14194 6.48450 7.05172 7.31175 7.96929 8.32849 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.048542 B = 0.005859 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.685688 B = 4777.811785 C = 5026.962853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.444 5.444 3 C -0.403 4.403 4 H 0.062 0.938 5 C 0.055 3.945 6 N -0.826 5.826 7 Si 0.948 3.052 8 H -0.284 1.284 9 H -0.259 1.259 10 H -0.269 1.269 11 C 0.470 3.530 12 O -0.632 6.632 13 C -0.115 4.115 14 C -0.099 4.099 15 C -0.097 4.097 16 C -0.131 4.131 17 C 0.108 3.892 18 F -0.229 7.229 19 C -0.097 4.097 20 C -0.111 4.111 21 H 0.042 0.958 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.286 0.714 25 H 0.117 0.883 26 H 0.158 0.842 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 -12.768 -3.234 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.161 5.161 3 C -0.528 4.528 4 H 0.080 0.920 5 C -0.156 4.156 6 N -0.457 5.457 7 Si 0.771 3.229 8 H -0.210 1.210 9 H -0.183 1.183 10 H -0.193 1.193 11 C 0.262 3.738 12 O -0.521 6.521 13 C -0.119 4.119 14 C -0.118 4.118 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.054 3.946 18 F -0.210 7.210 19 C -0.115 4.115 20 C -0.130 4.130 21 H 0.060 0.940 22 H 0.118 0.882 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.135 0.865 26 H 0.175 0.825 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.180 0.820 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.279 -12.568 -3.200 15.386 hybrid contribution 0.997 1.011 -0.055 1.421 sum -7.282 -11.557 -3.254 14.042 Atomic orbital electron populations 1.22931 0.80446 1.03996 1.01949 1.43510 1.06405 1.04280 1.61937 1.18876 1.13066 0.92195 1.28662 0.92026 1.26039 0.97401 0.97219 0.94968 1.70003 1.17128 1.26332 1.32271 0.85749 0.80382 0.77484 0.79331 1.20973 1.18315 1.19330 1.18940 0.86946 0.84791 0.83172 1.90543 1.16500 1.87837 1.57205 1.20178 0.96641 0.94241 1.00807 1.21221 0.99736 0.93165 0.97679 1.21243 0.94294 0.96316 0.99610 1.20718 0.96279 0.97420 0.98791 1.21054 0.99949 0.82950 0.90652 1.92779 1.93117 1.69286 1.65836 1.21319 1.00933 0.91552 0.97656 1.21694 0.93201 0.98852 0.99263 0.93953 0.88196 0.90208 0.90333 0.86533 0.82458 0.87207 0.86923 0.82018 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.19 8.58 127.77 1.10 3.28 16 2 N -0.44 -24.11 2.99 -662.33 -1.98 -26.09 16 3 C -0.40 -23.79 8.73 84.10 0.73 -23.05 16 4 H 0.06 3.96 7.94 -2.91 -0.02 3.94 16 5 C 0.05 2.91 5.32 84.96 0.45 3.37 16 6 N -0.83 -42.05 10.81 21.68 0.23 -41.82 16 7 Si 0.95 42.33 29.69 68.60 2.04 44.37 16 8 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 9 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 C 0.47 25.26 7.27 86.75 0.63 25.89 16 12 O -0.63 -39.07 16.85 -4.00 -0.07 -39.14 16 13 C -0.12 -4.79 5.30 -20.09 -0.11 -4.90 16 14 C -0.10 -3.55 9.65 22.54 0.22 -3.33 16 15 C -0.10 -2.53 9.68 22.23 0.22 -2.32 16 16 C -0.13 -3.00 5.60 -19.80 -0.11 -3.12 16 17 C 0.11 1.63 7.67 71.24 0.55 2.18 16 18 F -0.23 -4.94 17.34 44.97 0.78 -4.16 16 19 C -0.10 -2.40 9.68 22.23 0.22 -2.18 16 20 C -0.11 -3.71 7.36 22.54 0.17 -3.54 16 21 H 0.04 1.80 7.79 -2.39 -0.02 1.78 16 22 H 0.10 4.80 5.14 -2.39 -0.01 4.79 16 23 H 0.08 3.05 4.58 -2.39 -0.01 3.04 16 24 H 0.29 13.21 8.31 -92.71 -0.77 12.44 16 25 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 26 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 27 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 28 H 0.11 1.08 8.08 -2.39 -0.02 1.07 16 29 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 30 H 0.14 4.46 5.74 -2.91 -0.02 4.44 16 Total: -1.00 -71.62 263.69 6.22 -65.40 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.16 Total: 9.16 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.06 Total: -7.72 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -1.75 Total: -67.91 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.07 Total: -39.14 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.78 Total: -4.16 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.04 Total: 44.37 kcal Total: -71.62 6.22 -65.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824862898.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.907 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds