Wall clock time and date at job start Sun Mar 29 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48497 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47028 * 299.99989 * 3 2 1 6 6 H 1.48505 * 109.46977 * 59.99871 * 3 2 1 7 7 C 1.37880 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99981 * 175.02134 * 7 2 1 9 9 C 1.50702 * 119.99879 * 355.02089 * 7 2 1 10 10 C 1.53002 * 115.54996 * 279.47744 * 9 7 2 11 11 N 1.46503 * 109.46865 * 320.21001 * 10 9 7 12 12 C 1.39156 * 119.99582 * 184.86827 * 11 10 9 13 13 C 1.39205 * 120.06464 * 359.97438 * 12 11 10 14 14 N 1.32005 * 119.93526 * 180.02562 * 13 12 11 15 15 C 1.32400 * 120.05468 * 0.02562 * 14 13 12 16 16 F 1.35107 * 119.93721 * 180.02562 * 15 14 13 17 17 C 1.38461 * 120.12467 * 0.02562 * 15 14 13 18 18 N 1.32220 * 120.06576 * 359.71499 * 17 15 14 19 19 C 1.52995 * 117.49824 * 65.15171 * 9 7 2 20 20 C 1.53000 * 60.03424 * 107.50070 * 19 9 7 21 21 H 0.97000 * 120.00275 * 5.00223 * 1 2 3 22 22 H 1.08993 * 109.47211 * 80.20880 * 10 9 7 23 23 H 1.08999 * 109.47078 * 200.20911 * 10 9 7 24 24 H 0.96994 * 120.00453 * 4.86666 * 11 10 9 25 25 H 1.08003 * 120.03439 * 359.97438 * 13 12 11 26 26 H 1.07997 * 119.96841 * 180.02562 * 17 15 14 27 27 H 1.09001 * 117.49738 * 214.99858 * 19 9 7 28 28 H 1.09000 * 117.50188 * 359.97438 * 19 9 7 29 29 H 1.08996 * 117.49981 * 107.49845 * 20 19 9 30 30 H 1.09005 * 117.49259 * 252.52738 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0815 -1.1959 -0.0806 9 6 1.2553 -2.4967 0.1144 10 6 0.8331 -2.8935 1.5305 11 7 1.9078 -2.5653 2.4704 12 6 1.7958 -2.9278 3.8093 13 6 0.6630 -3.6017 4.2569 14 7 0.5592 -3.9438 5.5277 15 6 1.5311 -3.6461 6.3760 16 9 1.4226 -3.9979 7.6760 17 6 2.6584 -2.9749 5.9336 18 7 2.7697 -2.6344 4.6608 19 6 0.3186 -2.8755 -1.0344 20 6 1.6417 -3.6213 -0.8496 21 1 -0.4850 0.8368 -0.0732 22 1 -0.0698 -2.3489 1.8064 23 1 0.6356 -3.9649 1.5639 24 1 2.6974 -2.0955 2.1596 25 1 -0.1306 -3.8436 3.5655 26 1 3.4498 -2.7337 6.6277 27 1 -0.5985 -3.4075 -0.7814 28 1 0.2439 -2.1825 -1.8724 29 1 1.5950 -4.6438 -0.4749 30 1 2.4379 -3.4186 -1.5659 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853565614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:47 Heat of formation + Delta-G solvation = 33.030262 kcal Electronic energy + Delta-G solvation = -16188.435278 eV Core-core repulsion = 13320.383061 eV Total energy + Delta-G solvation = -2868.052217 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.64625 -40.62709 -37.32154 -34.86397 -33.71642 -32.15082 -29.46525 -26.16126 -25.58255 -24.48863 -22.57940 -21.24641 -19.60505 -18.04623 -17.68493 -16.90965 -16.10871 -15.96397 -14.93090 -14.60731 -14.54143 -14.23228 -13.84259 -13.32153 -13.14942 -12.87663 -12.50903 -11.74918 -11.39311 -11.17978 -11.10227 -11.04640 -10.61885 -10.38185 -9.82264 -9.69628 -9.15816 -8.97698 -8.63932 -8.31724 -7.29884 -6.23931 -4.34145 1.07329 1.41089 3.16825 3.27249 3.29360 3.44156 3.81738 3.90840 4.24105 4.55223 4.70844 5.04637 5.09589 5.20584 5.38589 5.67775 5.77595 6.05538 6.19401 6.30962 6.49124 6.58706 6.68453 6.89954 7.03014 7.18223 7.35614 7.64922 7.66998 7.92858 8.14851 8.34933 8.69284 9.35051 10.83204 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.006783 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.785453 B = 4127.229436 C = 4710.241807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.078 3.922 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.025 3.975 10 C 0.159 3.841 11 N -0.666 5.666 12 C 0.359 3.641 13 C 0.016 3.984 14 N -0.430 5.430 15 C 0.149 3.851 16 F -0.120 7.120 17 C 0.104 3.896 18 N -0.493 5.493 19 C -0.147 4.147 20 C -0.209 4.209 21 H 0.263 0.737 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.418 0.582 25 H 0.173 0.827 26 H 0.173 0.827 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 -5.207 5.901 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.024 3.976 10 C 0.035 3.965 11 N -0.293 5.293 12 C 0.116 3.884 13 C -0.156 4.156 14 N -0.148 5.148 15 C -0.009 4.009 16 F -0.100 7.100 17 C -0.061 4.061 18 N -0.216 5.216 19 C -0.185 4.185 20 C -0.246 4.246 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.062 0.938 24 H 0.257 0.743 25 H 0.190 0.810 26 H 0.190 0.810 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.892 -5.119 5.819 7.978 hybrid contribution 0.534 1.093 0.081 1.219 sum 2.425 -4.027 5.899 7.543 Atomic orbital electron populations 1.69968 1.05941 1.27071 1.47630 1.24983 0.94818 0.99060 0.93858 0.86578 0.80373 0.83640 0.77773 1.19490 1.20883 1.20847 1.20364 0.92879 0.88397 1.52663 0.91879 1.18957 0.99326 0.93391 0.85884 1.21147 0.88864 0.96643 0.89866 1.45056 1.23941 1.58119 1.02211 1.19601 0.90384 0.90626 0.87788 1.22857 0.98956 1.02511 0.91232 1.67459 1.27696 1.16402 1.03243 1.18637 0.95315 1.06017 0.80897 1.91557 1.96302 1.90846 1.31281 1.23163 0.96299 0.93996 0.92620 1.68081 1.28571 1.22929 1.02052 1.22528 0.91339 1.01773 1.02867 1.23092 0.99871 0.95592 1.06027 0.92746 0.91269 0.93801 0.74258 0.81030 0.81007 0.91639 0.89591 0.91485 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.63 12.86 55.43 0.71 -21.91 16 2 C 0.08 1.95 5.44 -17.82 -0.10 1.85 16 3 Si 0.89 19.84 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -12.19 7.36 -34.44 -0.25 -12.44 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.03 0.54 1.74 -155.62 -0.27 0.27 16 10 C 0.16 3.04 5.03 -4.04 -0.02 3.02 16 11 N -0.67 -12.48 5.56 -60.30 -0.34 -12.82 16 12 C 0.36 6.35 7.67 -154.63 -1.19 5.17 16 13 C 0.02 0.27 10.46 -17.12 -0.18 0.09 16 14 N -0.43 -7.38 10.50 -13.25 -0.14 -7.51 16 15 C 0.15 2.36 8.43 -17.22 -0.15 2.21 16 16 F -0.12 -1.81 17.29 2.25 0.04 -1.77 16 17 C 0.10 1.51 11.20 -17.30 -0.19 1.32 16 18 N -0.49 -8.44 10.53 -12.17 -0.13 -8.57 16 19 C -0.15 -3.06 9.43 -26.73 -0.25 -3.31 16 20 C -0.21 -4.03 9.89 -26.69 -0.26 -4.29 16 21 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 22 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 23 H 0.04 0.74 7.49 -51.93 -0.39 0.35 16 24 H 0.42 8.27 7.47 -40.82 -0.31 7.97 16 25 H 0.17 2.56 6.71 -52.48 -0.35 2.21 16 26 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 29 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 270.75 15.07 4.08 4.08 Total: -1.00 -25.98 270.75 -6.78 -32.75 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.12 Total: 7.05 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.86 Total: -6.11 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.11 Total: -50.81 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.98 -6.78 -32.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853565614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.785 kcal (2) G-P(sol) polarization free energy of solvation -25.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds