Wall clock time and date at job start Sun Mar 29 2020 21:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00064 * 2 1 4 4 N 1.46501 * 109.47027 * 125.00362 * 3 2 1 5 5 C 1.46508 * 119.99877 * 270.00586 * 4 3 2 6 6 C 1.50703 * 109.46951 * 269.99636 * 5 4 3 7 7 H 1.08000 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00063 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00281 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00187 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46792 * 89.99984 * 10 8 6 12 12 H 1.48491 * 109.47573 * 210.00016 * 10 8 6 13 13 H 1.48499 * 109.47153 * 330.00519 * 10 8 6 14 14 C 1.38564 * 120.00324 * 90.00458 * 4 3 2 15 15 C 1.39467 * 120.51191 * 4.99880 * 14 4 3 16 16 C 1.38475 * 118.31118 * 179.97438 * 15 14 4 17 17 F 1.35101 * 120.42637 * 179.97438 * 16 15 14 18 18 N 1.32784 * 119.13954 * 0.02562 * 16 15 14 19 19 C 1.31764 * 120.96171 * 359.97438 * 18 16 15 20 20 N 1.31760 * 121.85961 * 0.02562 * 19 18 16 21 21 H 1.07995 * 119.99920 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.99911 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00645 * 180.02562 * 2 1 3 24 24 H 1.09010 * 109.47117 * 5.00940 * 3 2 1 25 25 H 1.08993 * 109.47834 * 245.00487 * 3 2 1 26 26 H 1.08998 * 109.47108 * 29.99196 * 5 4 3 27 27 H 1.09005 * 109.46993 * 150.00095 * 5 4 3 28 28 H 0.96995 * 120.00263 * 179.97438 * 9 8 6 29 29 H 1.08000 * 120.84709 * 0.25428 * 15 14 4 30 30 H 1.07996 * 119.06700 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5589 1.8647 2.4250 6 6 2.8443 3.3434 2.4806 7 1 3.3033 3.8370 1.6367 8 6 2.5195 4.0662 3.6088 9 7 2.7690 5.3566 3.6577 10 14 1.7249 3.2128 5.0682 11 1 2.7810 2.7215 5.9895 12 1 0.8490 4.1729 5.7865 13 1 0.9133 2.0653 4.5889 14 6 4.2851 0.8531 0.9781 15 6 4.7433 0.4399 -0.2726 16 6 6.0419 -0.0302 -0.3739 17 9 6.5296 -0.4419 -1.5647 18 7 6.8011 -0.0720 0.7147 19 6 6.3360 0.3264 1.8813 20 7 5.1070 0.7804 2.0217 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9352 -0.0004 24 1 1.3586 2.1317 0.0897 25 1 2.6213 1.4027 -0.9313 26 1 1.4888 1.6965 2.5460 27 1 3.0991 1.3600 3.2260 28 1 2.5401 5.8652 4.4513 29 1 4.1032 0.4897 -1.1411 30 1 6.9802 0.2795 2.7468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853643593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:32 Heat of formation + Delta-G solvation = 42.062480 kcal Electronic energy + Delta-G solvation = -16352.114052 eV Core-core repulsion = 13484.453501 eV Total energy + Delta-G solvation = -2867.660551 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.88353 -40.43195 -37.24663 -33.81043 -32.82712 -32.03539 -30.89850 -28.18455 -25.91924 -23.90444 -23.18092 -21.09623 -19.85147 -17.95506 -17.57545 -16.98518 -15.95001 -15.77151 -15.58547 -14.90948 -14.49119 -14.29299 -14.06013 -13.61327 -13.39255 -13.06152 -12.42184 -11.94178 -11.75937 -11.47820 -11.04204 -10.69249 -10.59955 -10.34234 -10.05219 -9.61312 -9.42074 -9.33084 -8.92608 -8.66840 -7.39891 -6.17143 -4.17314 1.26399 1.66148 2.24173 3.22842 3.28564 3.30612 3.42916 3.77105 4.18137 4.31605 4.57786 4.89644 5.08290 5.15731 5.23506 5.30945 5.46946 5.56396 5.83514 5.89781 6.01715 6.41048 6.62958 6.67422 6.74557 6.87026 7.11794 7.47967 7.65845 7.79904 8.38805 8.60456 8.85430 9.41772 10.95913 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.008509 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.872558 B = 3289.755741 C = 4115.966805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.144 3.856 4 N -0.557 5.557 5 C 0.221 3.779 6 C -0.532 4.532 7 H 0.074 0.926 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.472 3.528 15 C -0.334 4.334 16 C 0.374 3.626 17 F -0.113 7.113 18 N -0.611 5.611 19 C 0.370 3.630 20 N -0.563 5.563 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.147 0.853 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -10.772 -6.420 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.021 3.979 4 N -0.262 5.262 5 C 0.101 3.899 6 C -0.570 4.570 7 H 0.092 0.908 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.227 3.773 15 C -0.365 4.365 16 C 0.216 3.784 17 F -0.092 7.092 18 N -0.338 5.338 19 C 0.080 3.920 20 N -0.288 5.288 21 H 0.115 0.885 22 H 0.119 0.881 23 H 0.124 0.876 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.165 0.835 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.577 -10.539 -5.554 11.926 hybrid contribution -0.762 -0.287 -0.140 0.826 sum -1.339 -10.826 -5.693 12.305 Atomic orbital electron populations 1.23859 0.95749 1.01981 1.00083 1.23407 0.96383 0.98966 1.00273 1.20683 0.92262 0.95733 0.89239 1.46867 1.06564 1.59278 1.13524 1.19824 0.95096 0.95260 0.79760 1.21280 1.41651 0.90959 1.03142 0.90815 1.24823 0.95147 0.94679 0.98105 1.69892 1.47461 1.06626 1.29327 0.86867 0.79934 0.79664 0.83332 1.19725 1.21067 1.19086 1.18300 0.86424 0.85034 0.87496 1.21732 0.97757 1.16980 0.99987 1.17931 0.88229 0.90941 0.81285 1.91597 1.88666 1.87256 1.41676 1.67780 1.39431 1.26977 0.99622 1.24476 0.88886 0.85927 0.92717 1.68114 1.05586 1.22540 1.32517 0.88548 0.88112 0.87576 0.88569 0.90027 0.95087 0.93575 0.92447 0.83515 0.78309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 14.32 29.01 0.42 -1.69 16 2 C -0.17 -2.27 9.85 -36.03 -0.35 -2.62 16 3 C 0.14 2.22 5.71 -5.19 -0.03 2.19 16 4 N -0.56 -10.86 2.54 -176.42 -0.45 -11.31 16 5 C 0.22 5.04 4.30 -5.19 -0.02 5.02 16 6 C -0.53 -14.44 9.94 -34.44 -0.34 -14.78 16 7 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 8 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 10 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 14 C 0.47 9.06 7.39 -154.77 -1.14 7.92 16 15 C -0.33 -5.52 9.32 -39.04 -0.36 -5.88 16 16 C 0.37 6.29 8.50 -17.05 -0.14 6.14 16 17 F -0.11 -1.76 17.30 2.25 0.04 -1.72 16 18 N -0.61 -10.57 10.45 -14.98 -0.16 -10.73 16 19 C 0.37 6.24 12.28 -92.21 -1.13 5.11 16 20 N -0.56 -11.19 9.23 -13.84 -0.13 -11.31 16 21 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 22 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 23 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 24 H 0.10 1.52 7.72 -51.92 -0.40 1.12 16 25 H 0.08 1.10 6.04 -51.93 -0.31 0.79 16 26 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 27 H 0.05 1.10 6.76 -51.93 -0.35 0.75 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.15 2.05 6.15 -52.49 -0.32 1.72 16 30 H 0.20 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 270.97 15.07 4.08 4.08 Total: -1.00 -30.62 270.97 -6.75 -37.37 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -3.03 Total: 0.16 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.22 Total: 3.40 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.04 Total: -59.25 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.62 -6.75 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853643593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.437 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds