Wall clock time and date at job start Sun Mar 29 2020 21:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00064 * 2 1 4 4 N 1.46501 * 109.47027 * 125.00362 * 3 2 1 5 5 C 1.46508 * 119.99877 * 270.00586 * 4 3 2 6 6 C 1.50703 * 109.46951 * 269.99636 * 5 4 3 7 7 H 1.08000 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00063 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00281 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00187 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46792 * 89.99984 * 10 8 6 12 12 H 1.48491 * 109.47573 * 210.00016 * 10 8 6 13 13 H 1.48499 * 109.47153 * 330.00519 * 10 8 6 14 14 C 1.38564 * 120.00324 * 90.00458 * 4 3 2 15 15 C 1.39467 * 120.51191 * 4.99880 * 14 4 3 16 16 C 1.38475 * 118.31118 * 179.97438 * 15 14 4 17 17 F 1.35101 * 120.42637 * 179.97438 * 16 15 14 18 18 N 1.32784 * 119.13954 * 0.02562 * 16 15 14 19 19 C 1.31764 * 120.96171 * 359.97438 * 18 16 15 20 20 N 1.31760 * 121.85961 * 0.02562 * 19 18 16 21 21 H 1.07995 * 119.99920 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.99911 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.00645 * 180.02562 * 2 1 3 24 24 H 1.09010 * 109.47117 * 5.00940 * 3 2 1 25 25 H 1.08993 * 109.47834 * 245.00487 * 3 2 1 26 26 H 1.08998 * 109.47108 * 29.99196 * 5 4 3 27 27 H 1.09005 * 109.46993 * 150.00095 * 5 4 3 28 28 H 0.96995 * 120.00263 * 179.97438 * 9 8 6 29 29 H 1.08000 * 120.84709 * 0.25428 * 15 14 4 30 30 H 1.07996 * 119.06700 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5589 1.8647 2.4250 6 6 2.8443 3.3434 2.4806 7 1 3.3033 3.8370 1.6367 8 6 2.5195 4.0662 3.6088 9 7 2.7690 5.3566 3.6577 10 14 1.7249 3.2128 5.0682 11 1 2.7810 2.7215 5.9895 12 1 0.8490 4.1729 5.7865 13 1 0.9133 2.0653 4.5889 14 6 4.2851 0.8531 0.9781 15 6 4.7433 0.4399 -0.2726 16 6 6.0419 -0.0302 -0.3739 17 9 6.5296 -0.4419 -1.5647 18 7 6.8011 -0.0720 0.7147 19 6 6.3360 0.3264 1.8813 20 7 5.1070 0.7804 2.0217 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9352 -0.0004 24 1 1.3586 2.1317 0.0897 25 1 2.6213 1.4027 -0.9313 26 1 1.4888 1.6965 2.5460 27 1 3.0991 1.3600 3.2260 28 1 2.5401 5.8652 4.4513 29 1 4.1032 0.4897 -1.1411 30 1 6.9802 0.2795 2.7468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853643593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:32 Heat of formation + Delta-G solvation = 24.250780 kcal Electronic energy + Delta-G solvation = -16352.886425 eV Core-core repulsion = 13484.453501 eV Total energy + Delta-G solvation = -2868.432924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.17086 -41.80849 -38.63121 -35.15028 -34.67452 -33.38929 -32.44729 -29.85045 -27.27516 -25.33812 -24.78499 -22.65130 -20.91522 -19.28673 -19.10602 -18.95298 -17.27607 -17.13100 -16.79870 -16.52545 -15.98087 -15.64972 -15.43183 -14.98890 -14.74650 -14.56098 -14.12383 -13.56631 -13.34243 -12.76286 -12.62163 -12.38803 -11.99444 -11.79773 -11.69017 -11.60310 -10.80127 -10.77999 -10.37336 -10.33023 -8.87711 -8.30952 -6.36331 -0.06118 0.26418 1.21150 1.37921 1.40070 1.48541 2.07186 2.33559 2.45499 2.81915 3.04224 3.29942 3.59426 3.99070 4.03071 4.11702 4.22045 4.38764 4.60203 4.78501 4.80598 4.91671 5.04216 5.39014 5.47746 5.57199 5.67635 5.82551 6.04029 6.36241 6.38466 6.65585 7.21949 7.28926 8.85753 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.008509 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.872558 B = 3289.755741 C = 4115.966805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C 0.141 3.859 4 N -0.569 5.569 5 C 0.235 3.765 6 C -0.530 4.530 7 H 0.026 0.974 8 C 0.015 3.985 9 N -0.946 5.946 10 Si 0.945 3.055 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.241 1.241 14 C 0.454 3.546 15 C -0.323 4.323 16 C 0.370 3.630 17 F -0.104 7.104 18 N -0.617 5.617 19 C 0.370 3.630 20 N -0.599 5.599 21 H 0.119 0.881 22 H 0.102 0.898 23 H 0.111 0.889 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.268 0.732 29 H 0.172 0.828 30 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -12.762 -6.408 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.019 3.981 4 N -0.275 5.275 5 C 0.113 3.887 6 C -0.569 4.569 7 H 0.045 0.955 8 C -0.183 4.183 9 N -0.586 5.586 10 Si 0.768 3.232 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.164 1.164 14 C 0.210 3.790 15 C -0.353 4.353 16 C 0.213 3.787 17 F -0.083 7.083 18 N -0.344 5.344 19 C 0.081 3.919 20 N -0.324 5.324 21 H 0.137 0.863 22 H 0.121 0.879 23 H 0.129 0.871 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.189 0.811 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.400 -12.562 -5.588 13.820 hybrid contribution -0.430 0.356 -0.259 0.615 sum -1.830 -12.206 -5.847 13.658 Atomic orbital electron populations 1.24090 0.95298 1.03155 0.97521 1.23237 0.96750 0.97848 1.02538 1.20858 0.91884 0.96790 0.88573 1.46844 1.07456 1.59783 1.13392 1.19415 0.95432 0.92133 0.81684 1.21484 1.40537 0.93349 1.01541 0.95534 1.25769 0.95856 0.95217 1.01435 1.70052 1.49462 1.08603 1.30509 0.85751 0.79175 0.79155 0.79088 1.19399 1.20740 1.16449 1.18586 0.86356 0.85622 0.88425 1.21835 0.97869 1.15791 0.99782 1.18049 0.88387 0.90807 0.81497 1.91618 1.88537 1.87072 1.41121 1.67855 1.39606 1.27015 0.99935 1.25111 0.88415 0.84771 0.93567 1.68110 1.06866 1.23842 1.33573 0.86326 0.87949 0.87063 0.89660 0.88465 0.93965 0.94246 0.92349 0.81071 0.75101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 14.32 67.78 0.97 -2.40 16 2 C -0.18 -4.48 9.85 25.65 0.25 -4.22 16 3 C 0.14 4.18 5.71 85.63 0.49 4.67 16 4 N -0.57 -21.80 2.54 -712.08 -1.81 -23.61 16 5 C 0.24 10.60 4.30 85.63 0.37 10.97 16 6 C -0.53 -29.39 9.94 25.60 0.25 -29.14 16 7 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 8 C 0.02 0.86 5.47 84.65 0.46 1.33 16 9 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 10 Si 0.95 42.20 27.47 68.60 1.88 44.09 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 14 C 0.45 17.07 7.39 133.10 0.98 18.06 16 15 C -0.32 -10.17 9.32 22.62 0.21 -9.96 16 16 C 0.37 11.85 8.50 84.61 0.72 12.57 16 17 F -0.10 -3.05 17.30 44.97 0.78 -2.27 16 18 N -0.62 -20.44 10.45 -201.32 -2.10 -22.54 16 19 C 0.37 12.03 12.28 180.90 2.22 14.25 16 20 N -0.60 -23.40 9.23 -197.70 -1.82 -25.22 16 21 H 0.12 1.95 8.06 -2.91 -0.02 1.92 16 22 H 0.10 2.09 7.84 -2.91 -0.02 2.06 16 23 H 0.11 2.60 8.06 -2.91 -0.02 2.58 16 24 H 0.09 2.67 7.72 -2.38 -0.02 2.65 16 25 H 0.10 2.49 6.04 -2.39 -0.01 2.47 16 26 H 0.04 1.81 7.13 -2.39 -0.02 1.80 16 27 H 0.04 1.84 6.76 -2.38 -0.02 1.82 16 28 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.17 4.39 6.15 -2.91 -0.02 4.38 16 30 H 0.23 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -66.71 270.97 5.25 -61.46 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.09 Total: 9.57 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.93 Total: 16.11 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -5.44 Total: -128.96 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.09 kcal Total: -66.71 5.25 -61.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853643593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.707 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds