Wall clock time and date at job start Sun Mar 29 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46844 * 129.12378 * 3 2 1 5 5 O 1.45198 * 109.46848 * 179.97438 * 4 3 2 6 6 C 1.34637 * 116.99722 * 179.97438 * 5 4 3 7 7 O 1.21510 * 120.00428 * 0.02562 * 6 5 4 8 8 N 1.34782 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99942 * 180.27557 * 8 6 5 10 10 C 1.53005 * 109.46942 * 178.21726 * 9 8 6 11 11 C 1.50697 * 115.54927 * 65.12975 * 10 9 8 12 12 H 1.08000 * 119.99825 * 265.41127 * 11 10 9 13 13 C 1.37870 * 120.00191 * 85.40713 * 11 10 9 14 14 N 1.31511 * 120.00139 * 353.55966 * 13 11 10 15 15 Si 1.86796 * 120.00125 * 173.55888 * 13 11 10 16 16 H 1.48501 * 109.46996 * 90.00080 * 15 13 11 17 17 H 1.48505 * 109.47390 * 209.99972 * 15 13 11 18 18 H 1.48503 * 109.47242 * 330.00261 * 15 13 11 19 19 C 1.53004 * 117.49599 * 279.45550 * 10 9 8 20 20 C 1.52995 * 117.49601 * 210.80112 * 10 9 8 21 21 H 4.44648 * 5.63471 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.47789 * 9.12362 * 3 2 1 23 23 H 1.09001 * 109.46584 * 249.11850 * 3 2 1 24 24 H 1.08996 * 109.46940 * 59.99465 * 4 3 2 25 25 H 1.08991 * 109.47098 * 299.99296 * 4 3 2 26 26 H 0.96998 * 119.99939 * 0.02562 * 8 6 5 27 27 H 1.08999 * 109.47336 * 298.21717 * 9 8 6 28 28 H 1.09001 * 109.46683 * 58.22047 * 9 8 6 29 29 H 0.97003 * 120.00760 * 185.06462 * 14 13 11 30 30 H 1.08999 * 117.50006 * 0.02562 * 19 10 9 31 31 H 1.09001 * 117.49309 * 145.01721 * 19 10 9 32 32 H 1.09009 * 117.49505 * 214.98214 * 20 10 9 33 33 H 1.08997 * 117.50195 * 359.97126 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9111 -1.1191 5 8 4.6075 0.9123 -1.1187 6 6 5.2184 1.6692 -2.0497 7 8 4.5563 2.3116 -2.8405 8 7 6.5643 1.7143 -2.1045 9 6 7.2290 2.5426 -3.1136 10 6 8.7453 2.4508 -2.9307 11 6 9.3489 1.0926 -3.1798 12 1 9.5114 0.4145 -2.3551 13 6 9.6935 0.7158 -4.4604 14 7 9.3810 1.4863 -5.4792 15 14 10.6044 -0.8894 -4.7484 16 1 9.6235 -1.9847 -4.9565 17 1 11.4656 -0.7610 -5.9514 18 1 11.4483 -1.1987 -3.5662 19 6 9.3789 3.3163 -1.8396 20 6 9.5785 3.6753 -3.3141 21 1 -1.0502 0.0000 0.0003 22 1 3.0099 -1.0138 -0.1629 23 1 3.0091 0.3671 0.9602 24 1 2.7917 1.9256 -0.9562 25 1 2.7925 0.5447 -2.0792 26 1 7.0929 1.2012 -1.4734 27 1 6.9609 2.1879 -4.1088 28 1 6.9113 3.5791 -2.9994 29 1 9.5573 1.1879 -6.3852 30 1 8.7155 3.9508 -1.2518 31 1 10.2325 2.9034 -1.3021 32 1 10.5635 3.4986 -3.7462 33 1 9.0465 4.5462 -3.6971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859146386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:38 Heat of formation + Delta-G solvation = -13.243191 kcal Electronic energy + Delta-G solvation = -16113.414244 eV Core-core repulsion = 13334.523013 eV Total energy + Delta-G solvation = -2778.891231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.92588 -37.27316 -36.13975 -34.48195 -33.43665 -31.99830 -30.37033 -26.53678 -25.30456 -23.67301 -21.29689 -20.69986 -19.52868 -18.48805 -17.76292 -16.46554 -16.37060 -16.00035 -14.76320 -14.52805 -14.40861 -13.91648 -13.74059 -13.42087 -12.84958 -12.57196 -11.98169 -11.78725 -11.60496 -11.01111 -10.96973 -10.55834 -10.52459 -10.51717 -10.31128 -10.18153 -10.09067 -9.63317 -9.02128 -8.52708 -8.40075 -8.17917 -6.10334 -4.19232 2.31080 2.62420 2.87427 3.25546 3.33378 3.35476 3.39205 4.17642 4.34186 4.79115 4.93186 5.03545 5.17769 5.29200 5.32944 5.71158 5.71711 5.78248 5.96651 6.28764 6.39750 6.48292 6.57856 6.67838 6.89146 7.05823 7.16573 7.36673 7.37827 7.43630 7.79580 8.18233 8.30172 8.81664 8.94257 9.48126 10.97490 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.005118 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.167345 B = 5469.098790 C = 5978.302318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.184 4.184 3 C -0.012 4.012 4 C 0.094 3.906 5 O -0.376 6.376 6 C 0.640 3.360 7 O -0.586 6.586 8 N -0.680 5.680 9 C 0.179 3.821 10 C 0.025 3.975 11 C -0.502 4.502 12 H 0.062 0.938 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.209 4.209 20 C -0.145 4.145 21 H 0.219 0.781 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.407 0.593 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -1.671 9.168 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.184 4.184 3 C -0.048 4.048 4 C 0.018 3.982 5 O -0.291 6.291 6 C 0.392 3.608 7 O -0.476 6.476 8 N -0.337 5.337 9 C 0.057 3.943 10 C 0.025 3.975 11 C -0.540 4.540 12 H 0.080 0.920 13 C -0.130 4.130 14 N -0.511 5.511 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.247 4.247 20 C -0.183 4.183 21 H 0.236 0.764 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.242 0.758 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.043 -1.314 8.570 13.268 hybrid contribution 0.415 -1.048 -0.130 1.134 sum -9.628 -2.362 8.440 13.020 Atomic orbital electron populations 1.24918 0.95909 1.00560 1.00222 1.22650 0.93985 1.00823 1.00990 1.18502 0.84708 1.01738 0.99877 1.22652 0.76058 1.00375 0.99082 1.86153 1.22624 1.65828 1.54502 1.18194 0.84045 0.78894 0.79689 1.90952 1.64863 1.48342 1.43490 1.44831 1.01527 1.50011 1.37299 1.21089 0.92172 0.90845 0.90174 1.19022 0.88422 0.92598 0.97497 1.20350 1.41582 0.98752 0.93285 0.92035 1.24988 0.95091 0.96745 0.96189 1.69968 1.46313 1.36229 0.98548 0.86610 0.80024 0.83655 0.77859 1.20635 1.21154 1.19757 1.23041 1.03644 1.05930 0.92060 1.22502 1.01936 0.98655 0.95188 0.76376 0.88247 0.88331 0.91033 0.90927 0.75803 0.90625 0.94123 0.92782 0.91517 0.90190 0.89660 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.18 -1.99 13.34 -37.12 -0.50 -2.49 16 3 C -0.01 -0.12 6.08 -29.52 -0.18 -0.30 16 4 C 0.09 1.27 5.43 37.16 0.20 1.47 16 5 O -0.38 -6.21 10.27 -40.32 -0.41 -6.62 16 6 C 0.64 12.79 8.75 54.06 0.47 13.26 16 7 O -0.59 -13.35 16.13 -19.28 -0.31 -13.67 16 8 N -0.68 -13.68 5.48 -65.27 -0.36 -14.04 16 9 C 0.18 4.03 5.50 -4.04 -0.02 4.01 16 10 C 0.03 0.59 1.38 -155.66 -0.21 0.37 16 11 C -0.50 -12.78 8.63 -34.44 -0.30 -13.08 16 12 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 13 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 14 N -0.87 -24.00 12.91 55.43 0.72 -23.28 16 15 Si 0.89 20.40 29.55 -169.99 -5.02 15.38 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 20 C -0.14 -3.23 9.42 -26.70 -0.25 -3.48 16 21 H 0.22 1.23 7.80 -54.08 -0.42 0.81 16 22 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.41 7.58 8.48 -40.82 -0.35 7.23 16 27 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 28 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 302.57 15.07 4.56 4.56 Total: -1.00 -29.42 302.57 -5.95 -35.37 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.54 Total: 6.50 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.58 Total: -4.20 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.36 Total: -37.32 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.73 Total: -20.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.42 -5.95 -35.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859146386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.124 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds