Wall clock time and date at job start Sun Mar 29 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99466 * 2 1 4 4 H 1.48497 * 109.47673 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 239.99736 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00000 * 3 2 1 7 7 C 1.40045 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.67054 * 7 2 1 9 9 C 1.46373 * 119.99626 * 184.67774 * 7 2 1 10 10 O 1.21687 * 120.00293 * 6.23890 * 9 7 2 11 11 N 1.34780 * 119.99746 * 186.24684 * 9 7 2 12 12 C 1.46451 * 120.00001 * 179.97438 * 11 9 7 13 13 H 1.08862 * 109.54909 * 326.13569 * 12 11 9 14 14 C 1.57415 * 109.79077 * 87.18734 * 12 11 9 15 15 H 1.09919 * 114.21111 * 349.54828 * 14 12 11 16 16 O 1.46936 * 109.36380 * 220.81369 * 14 12 11 17 17 C 1.49447 * 109.03017 * 259.38838 * 16 14 12 18 18 C 1.49168 * 87.70846 * 37.12252 * 17 16 14 19 19 H 1.08472 * 80.95801 * 28.53114 * 18 17 16 20 20 C 1.46039 * 149.86433 * 102.00399 * 18 17 16 21 21 C 1.55248 * 109.94587 * 204.99724 * 12 11 9 22 22 H 1.09834 * 114.38865 * 43.22572 * 21 12 11 23 23 C 1.55666 * 99.26851 * 280.32950 * 21 12 11 24 24 C 1.55809 * 94.94965 * 305.67799 * 23 21 12 25 25 H 1.10157 * 118.36439 * 191.06449 * 24 23 21 26 26 H 0.97000 * 120.00092 * 174.89925 * 1 2 3 27 27 H 0.97002 * 119.99928 * 359.97438 * 11 9 7 28 28 H 1.08130 * 112.96287 * 150.70289 * 17 16 14 29 29 H 1.08098 * 113.00850 * 283.48072 * 17 16 14 30 30 H 1.09769 * 112.94929 * 107.59400 * 20 18 17 31 31 H 1.09760 * 112.96368 * 341.50453 * 20 18 17 32 32 H 1.08972 * 112.56320 * 62.75973 * 23 21 12 33 33 H 1.09225 * 112.03254 * 189.13197 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 1.4697 -2.1465 -0.0771 9 6 3.4671 -1.2149 0.1028 10 8 4.0644 -0.1738 0.3031 11 7 4.1499 -2.3700 -0.0240 12 6 5.6108 -2.3720 0.0789 13 1 6.0063 -1.4448 -0.3323 14 6 6.0388 -2.5220 1.5863 15 1 5.2116 -2.4164 2.3024 16 8 7.1757 -1.6326 1.8608 17 6 8.4364 -2.4351 1.8481 18 6 7.8497 -3.2280 0.7290 19 1 7.3410 -2.2858 0.5554 20 6 7.7651 -3.5278 -0.6978 21 6 6.1941 -3.5884 -0.6895 22 1 5.7310 -3.7708 -1.6686 23 6 5.9440 -4.6990 0.3721 24 6 6.6878 -3.9559 1.5220 25 1 6.9039 -4.5098 2.4493 26 1 -0.4850 -0.8367 -0.0747 27 1 3.6738 -3.1999 -0.1834 28 1 9.2993 -1.8603 1.5413 29 1 8.5730 -3.0215 2.7458 30 1 8.2324 -4.4852 -0.9623 31 1 8.1624 -2.7225 -1.3289 32 1 4.8848 -4.8455 0.5824 33 1 6.4294 -5.6398 0.1032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870481766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:52 Heat of formation + Delta-G solvation = 73.005094 kcal Electronic energy + Delta-G solvation = -17653.441485 eV Core-core repulsion = 14878.290260 eV Total energy + Delta-G solvation = -2775.151225 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.32997 -37.75284 -35.86750 -33.12081 -32.72872 -29.80279 -28.65711 -27.37333 -26.22087 -24.71971 -20.36204 -20.11738 -20.00498 -18.97969 -17.97488 -16.61067 -15.82911 -15.34053 -15.21865 -14.66356 -14.05946 -13.73442 -13.41155 -13.26091 -13.01022 -12.27077 -12.05164 -11.92559 -11.53718 -11.38910 -11.08846 -10.79726 -10.51100 -10.42397 -10.20020 -9.99646 -9.61546 -9.21240 -8.96876 -8.37650 -7.95963 -7.91725 -6.99479 -4.94058 3.52332 3.59703 3.69177 3.72522 4.08844 4.19629 4.31652 4.41171 4.51469 4.63018 4.76213 5.00127 5.16185 5.25760 5.29543 5.39479 5.52178 5.53992 5.65925 5.77711 5.86432 5.96855 6.00670 6.01990 6.08335 6.28664 6.42146 6.51462 6.70757 7.46768 7.66544 7.74002 8.09022 8.82738 9.03933 10.05472 10.33002 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040344 B = 0.007743 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.871637 B = 3615.086814 C = 3935.058915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.061 3.939 3 Si 1.129 2.871 4 H -0.322 1.322 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.598 4.598 8 H 0.070 0.930 9 C 0.550 3.450 10 O -0.611 6.611 11 N -0.745 5.745 12 C 0.137 3.863 13 H 0.087 0.913 14 C 0.069 3.931 15 H 0.110 0.890 16 O -0.406 6.406 17 C 0.109 3.891 18 C -0.346 4.346 19 H 0.156 0.844 20 C -0.033 4.033 21 C -0.115 4.115 22 H 0.102 0.898 23 C -0.115 4.115 24 C -0.133 4.133 25 H 0.113 0.887 26 H 0.277 0.723 27 H 0.387 0.613 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 -10.320 0.397 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.156 4.156 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.503 6.503 11 N -0.396 5.396 12 C 0.030 3.970 13 H 0.105 0.895 14 C 0.011 3.989 15 H 0.128 0.872 16 O -0.327 6.327 17 C 0.035 3.965 18 C -0.363 4.363 19 H 0.171 0.829 20 C -0.070 4.070 21 C -0.134 4.134 22 H 0.120 0.880 23 C -0.153 4.153 24 C -0.151 4.151 25 H 0.131 0.869 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.848 -7.754 0.626 15.883 hybrid contribution -0.192 -2.547 -0.102 2.556 sum 13.656 -10.301 0.524 17.114 Atomic orbital electron populations 1.70661 1.07586 1.31958 1.35833 1.27155 0.95314 1.04981 0.88200 0.82393 0.71402 0.70777 0.79257 1.25417 1.21897 1.20664 1.22035 0.89837 0.96327 1.55242 0.91201 1.18517 0.88669 0.81375 0.75584 1.90179 1.70518 1.31166 1.58484 1.45758 1.03973 1.10929 1.78925 1.22498 0.83621 0.98274 0.92623 0.89462 1.25914 0.87888 0.87852 0.97218 0.87241 1.90157 1.16063 1.34979 1.91532 1.22511 0.86750 0.91908 0.95355 1.24172 1.05980 1.10473 0.95702 0.82873 1.20777 0.93650 1.01547 0.91075 1.23946 0.95143 0.95780 0.98542 0.88033 1.22969 1.00274 0.97191 0.94826 1.25278 0.96966 0.94617 0.98215 0.86928 0.91236 0.78031 0.88108 0.89924 0.91535 0.90825 0.90681 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.30 13.64 55.55 0.76 -23.55 16 2 C 0.06 1.78 5.52 -17.37 -0.10 1.69 16 3 Si 1.13 30.60 25.99 -169.99 -4.42 26.18 16 4 H -0.32 -8.38 7.11 56.52 0.40 -7.98 16 5 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.28 -7.88 6.78 56.52 0.38 -7.50 16 7 C -0.60 -17.01 9.96 -35.63 -0.36 -17.36 16 8 H 0.07 1.94 8.05 -52.49 -0.42 1.52 16 9 C 0.55 14.77 7.57 -12.99 -0.10 14.67 16 10 O -0.61 -18.04 11.72 5.20 0.06 -17.98 16 11 N -0.74 -15.72 5.01 -52.19 -0.26 -15.98 16 12 C 0.14 2.53 2.03 -64.36 -0.13 2.40 16 13 H 0.09 1.89 7.13 -52.01 -0.37 1.52 16 14 C 0.07 1.22 5.08 -21.86 -0.11 1.11 16 15 H 0.11 2.14 8.20 -51.41 -0.42 1.72 16 16 O -0.41 -7.42 10.69 -35.23 -0.38 -7.80 16 17 C 0.11 1.40 8.52 35.27 0.30 1.70 16 18 C -0.35 -4.58 5.25 -92.83 -0.49 -5.07 16 19 H 0.16 2.50 1.57 -109.61 -0.17 2.33 16 20 C -0.03 -0.39 6.77 -27.74 -0.19 -0.58 16 21 C -0.12 -1.58 4.41 -85.72 -0.38 -1.96 16 22 H 0.10 1.32 8.21 -51.46 -0.42 0.90 16 23 C -0.12 -1.42 6.50 -23.81 -0.15 -1.57 16 24 C -0.13 -1.77 5.34 -83.68 -0.45 -2.21 16 25 H 0.11 1.31 8.12 -51.27 -0.42 0.89 16 26 H 0.28 7.73 8.72 -40.82 -0.36 7.38 16 27 H 0.39 7.22 7.85 -40.82 -0.32 6.90 16 28 H 0.10 1.09 8.07 -52.41 -0.42 0.66 16 29 H 0.08 0.89 7.68 -52.43 -0.40 0.49 16 30 H 0.07 0.68 8.21 -51.49 -0.42 0.25 16 31 H 0.07 0.85 8.21 -51.50 -0.42 0.43 16 32 H 0.07 0.95 7.39 -51.94 -0.38 0.56 16 33 H 0.07 0.79 8.15 -51.80 -0.42 0.36 16 LS Contribution 260.53 15.07 3.93 3.93 Total: -1.00 -32.83 260.53 -6.65 -39.48 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.19 Total: 2.92 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.14 Total: -7.20 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.50 Total: -39.53 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.32 Total: -25.78 kcal Atomic # 14 Polarization: 30.60 SS G_CDS: -4.42 Total: 26.18 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.83 -6.65 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870481766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.489 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds