Wall clock time and date at job start Sun Mar 29 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48503 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47159 * 300.00272 * 3 2 1 6 6 H 1.48501 * 109.47261 * 60.00180 * 3 2 1 7 7 C 1.40048 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00264 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99778 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00191 * 179.72526 * 9 7 2 12 12 C 1.46494 * 119.99948 * 175.63834 * 11 9 7 13 13 C 1.53097 * 119.79752 * 29.35655 * 12 11 9 14 14 C 1.54728 * 122.39919 * 317.09256 * 12 11 9 15 15 H 1.09004 * 122.22800 * 359.48740 * 14 12 11 16 16 C 1.54467 * 104.06479 * 223.50115 * 14 12 11 17 17 O 1.44603 * 105.15555 * 336.96624 * 16 14 12 18 18 C 1.43340 * 105.21859 * 38.93500 * 17 16 14 19 19 C 1.52797 * 115.73410 * 90.08695 * 18 17 16 20 20 C 1.53956 * 86.77914 * 92.98087 * 19 18 17 21 21 C 1.52762 * 115.79374 * 191.16591 * 18 17 16 22 22 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99665 * 355.63506 * 11 9 7 24 24 H 1.08999 * 117.42463 * 355.39418 * 13 12 11 25 25 H 1.09011 * 117.42245 * 139.98119 * 13 12 11 26 26 H 1.09003 * 110.30596 * 218.04169 * 16 14 12 27 27 H 1.09007 * 110.30138 * 95.88603 * 16 14 12 28 28 H 1.08996 * 113.66536 * 207.44989 * 19 18 17 29 29 H 1.09001 * 113.66496 * 338.51672 * 19 18 17 30 30 H 1.08999 * 113.58992 * 270.10071 * 20 19 18 31 31 H 1.09002 * 113.66415 * 139.29685 * 20 19 18 32 32 H 1.08998 * 113.66592 * 21.55005 * 21 18 17 33 33 H 1.09003 * 113.66125 * 152.50872 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6477 -0.0067 12 6 1.2202 -4.9148 0.0898 13 6 -0.2053 -5.0162 -0.4593 14 6 0.0430 -5.1213 1.0725 15 1 -0.2958 -4.3351 1.7471 16 6 0.3020 -6.5175 1.6804 17 8 1.1332 -7.2019 0.7151 18 6 2.0412 -6.2058 0.2271 19 6 3.3538 -6.0703 0.9974 20 6 3.9510 -7.0622 -0.0174 21 6 2.8610 -6.5981 -1.0008 22 1 -0.4850 0.8401 0.0004 23 1 2.9166 -3.6487 -0.0750 24 1 -0.6622 -4.1034 -0.8414 25 1 -0.4770 -5.9319 -0.9847 26 1 -0.6385 -7.0515 1.8158 27 1 0.8256 -6.4245 2.6319 28 1 3.7914 -5.0735 0.9441 29 1 3.3067 -6.4601 2.0142 30 1 3.8522 -8.1055 0.2825 31 1 4.9621 -6.8076 -0.3350 32 1 2.4203 -7.4094 -1.5802 33 1 3.1585 -5.7499 -1.6174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887128065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:10 Heat of formation + Delta-G solvation = -18.759136 kcal Electronic energy + Delta-G solvation = -17444.248916 eV Core-core repulsion = 14665.118496 eV Total energy + Delta-G solvation = -2779.130420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81151 -37.30240 -36.21177 -33.95449 -32.42167 -31.21983 -27.27360 -26.19646 -25.48807 -24.76231 -21.13410 -20.71605 -19.21588 -18.34473 -17.54411 -16.16102 -15.65459 -15.30949 -14.95076 -14.44060 -13.97291 -13.57337 -13.07851 -12.69189 -12.49485 -12.29203 -12.15109 -11.91612 -11.30022 -11.13307 -11.06758 -10.79964 -10.61099 -10.54295 -10.40343 -10.21610 -9.91051 -9.38252 -9.16869 -8.87295 -7.54373 -7.26588 -6.24416 -4.71209 3.08788 3.17464 3.21519 3.90183 4.02371 4.10925 4.51260 4.56821 4.69317 4.84315 5.04343 5.12386 5.38739 5.42752 5.51207 5.64406 5.79651 5.85516 5.89776 5.94974 5.99292 6.01754 6.18347 6.31256 6.37348 6.41524 6.77762 7.08107 7.18495 7.37497 7.82173 8.06328 8.25850 8.95863 9.44732 10.52338 10.70449 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036903 B = 0.007326 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.566811 B = 3820.874153 C = 4285.992496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.570 6.570 11 N -0.720 5.720 12 C 0.094 3.906 13 C -0.129 4.129 14 C -0.221 4.221 15 H 0.122 0.878 16 C 0.076 3.924 17 O -0.351 6.351 18 C 0.114 3.886 19 C -0.149 4.149 20 C -0.136 4.136 21 C -0.123 4.123 22 H 0.268 0.732 23 H 0.383 0.617 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 -10.029 0.901 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.453 6.453 11 N -0.373 5.373 12 C 0.003 3.997 13 C -0.167 4.167 14 C -0.241 4.241 15 H 0.140 0.860 16 C -0.001 4.001 17 O -0.269 6.269 18 C 0.073 3.927 19 C -0.187 4.187 20 C -0.173 4.173 21 C -0.161 4.161 22 H 0.079 0.921 23 H 0.216 0.784 24 H 0.154 0.846 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.674 -10.127 0.866 11.188 hybrid contribution 0.844 1.089 0.251 1.401 sum 5.518 -9.038 1.117 10.648 Atomic orbital electron populations 1.70018 1.07009 1.27261 1.35077 1.25688 0.94640 1.00273 0.92582 0.86312 0.80488 0.81701 0.78252 1.18777 1.20116 1.20159 1.20889 0.93624 0.89215 1.54321 0.91399 1.18245 0.87334 0.81991 0.76366 1.90519 1.13852 1.86305 1.54613 1.45373 1.08408 1.02875 1.80663 1.21555 0.87172 0.86439 1.04525 1.23844 0.96660 1.03503 0.92682 1.24588 1.08023 0.97552 0.93966 0.86043 1.22918 0.94125 0.91654 0.91385 1.88909 1.47834 1.31795 1.58332 1.22037 0.88805 0.86025 0.95855 1.23233 0.95949 1.00504 0.98988 1.22867 0.98247 0.99356 0.96854 1.22871 0.95509 1.01905 0.95772 0.92099 0.78354 0.84635 0.90651 0.89285 0.92019 0.88815 0.90975 0.90112 0.91247 0.90663 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.35 11.83 55.55 0.66 -21.70 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.79 29.56 -169.99 -5.02 14.76 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.54 -14.96 9.54 -35.63 -0.34 -15.30 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.25 7.62 -12.99 -0.10 15.16 16 10 O -0.57 -17.33 11.43 5.20 0.06 -17.27 16 11 N -0.72 -15.96 5.44 -47.82 -0.26 -16.22 16 12 C 0.09 1.87 3.14 -130.54 -0.41 1.46 16 13 C -0.13 -2.70 9.23 -25.33 -0.23 -2.93 16 14 C -0.22 -4.41 6.60 -87.59 -0.58 -4.99 16 15 H 0.12 2.74 7.88 -51.93 -0.41 2.34 16 16 C 0.08 1.22 7.54 37.93 0.29 1.51 16 17 O -0.35 -5.92 11.18 -35.23 -0.39 -6.32 16 18 C 0.11 1.87 1.00 -90.54 -0.09 1.78 16 19 C -0.15 -2.12 7.49 -26.34 -0.20 -2.32 16 20 C -0.14 -1.65 8.09 -25.74 -0.21 -1.86 16 21 C -0.12 -1.73 7.63 -26.35 -0.20 -1.93 16 22 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 23 H 0.38 7.51 7.28 -40.82 -0.30 7.21 16 24 H 0.14 3.35 5.86 -51.93 -0.30 3.05 16 25 H 0.08 1.42 8.12 -51.92 -0.42 1.00 16 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.34 6.59 -51.93 -0.34 1.00 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 272.99 15.07 4.11 4.11 Total: -1.00 -31.71 272.99 -7.29 -39.00 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.28 Total: 10.75 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.17 Total: -7.13 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.40 Total: -37.92 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.33 Total: -23.58 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.71 -7.29 -39.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887128065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.241 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds