Wall clock time and date at job start Sun Mar 29 2020 21:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48503 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47159 * 300.00272 * 3 2 1 6 6 H 1.48501 * 109.47261 * 60.00180 * 3 2 1 7 7 C 1.40048 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00264 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99778 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00191 * 179.72526 * 9 7 2 12 12 C 1.46494 * 119.99948 * 175.63834 * 11 9 7 13 13 C 1.53097 * 119.79752 * 29.35655 * 12 11 9 14 14 C 1.54728 * 122.39919 * 317.09256 * 12 11 9 15 15 H 1.09004 * 122.22800 * 359.48740 * 14 12 11 16 16 C 1.54467 * 104.06479 * 223.50115 * 14 12 11 17 17 O 1.44603 * 105.15555 * 336.96624 * 16 14 12 18 18 C 1.43340 * 105.21859 * 38.93500 * 17 16 14 19 19 C 1.52797 * 115.73410 * 90.08695 * 18 17 16 20 20 C 1.53956 * 86.77914 * 92.98087 * 19 18 17 21 21 C 1.52762 * 115.79374 * 191.16591 * 18 17 16 22 22 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99665 * 355.63506 * 11 9 7 24 24 H 1.08999 * 117.42463 * 355.39418 * 13 12 11 25 25 H 1.09011 * 117.42245 * 139.98119 * 13 12 11 26 26 H 1.09003 * 110.30596 * 218.04169 * 16 14 12 27 27 H 1.09007 * 110.30138 * 95.88603 * 16 14 12 28 28 H 1.08996 * 113.66536 * 207.44989 * 19 18 17 29 29 H 1.09001 * 113.66496 * 338.51672 * 19 18 17 30 30 H 1.08999 * 113.58992 * 270.10071 * 20 19 18 31 31 H 1.09002 * 113.66415 * 139.29685 * 20 19 18 32 32 H 1.08998 * 113.66592 * 21.55005 * 21 18 17 33 33 H 1.09003 * 113.66125 * 152.50872 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6477 -0.0067 12 6 1.2202 -4.9148 0.0898 13 6 -0.2053 -5.0162 -0.4593 14 6 0.0430 -5.1213 1.0725 15 1 -0.2958 -4.3351 1.7471 16 6 0.3020 -6.5175 1.6804 17 8 1.1332 -7.2019 0.7151 18 6 2.0412 -6.2058 0.2271 19 6 3.3538 -6.0703 0.9974 20 6 3.9510 -7.0622 -0.0174 21 6 2.8610 -6.5981 -1.0008 22 1 -0.4850 0.8401 0.0004 23 1 2.9166 -3.6487 -0.0750 24 1 -0.6622 -4.1034 -0.8414 25 1 -0.4770 -5.9319 -0.9847 26 1 -0.6385 -7.0515 1.8158 27 1 0.8256 -6.4245 2.6319 28 1 3.7914 -5.0735 0.9441 29 1 3.3067 -6.4601 2.0142 30 1 3.8522 -8.1055 0.2825 31 1 4.9621 -6.8076 -0.3350 32 1 2.4203 -7.4094 -1.5802 33 1 3.1585 -5.7499 -1.6174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887128065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:09 Heat of formation + Delta-G solvation = -41.230802 kcal Electronic energy + Delta-G solvation = -17445.223361 eV Core-core repulsion = 14665.118496 eV Total energy + Delta-G solvation = -2780.104865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21149 -39.20066 -37.50659 -35.67229 -34.49794 -33.07595 -28.80695 -28.04945 -26.71047 -26.06715 -22.90757 -22.18626 -20.82127 -19.82695 -19.41057 -17.87869 -17.31607 -16.80007 -16.31414 -15.83171 -15.61294 -15.16795 -14.68252 -14.61378 -14.24197 -13.65428 -13.39211 -13.34655 -13.11999 -12.84996 -12.64517 -12.56878 -12.08275 -11.97368 -11.83137 -11.60892 -11.48792 -10.95125 -10.70215 -10.64117 -9.68325 -9.11691 -8.30346 -6.87587 1.38131 1.39012 1.56328 2.20750 2.33326 2.59525 2.66409 2.87652 3.44233 3.61152 3.67695 3.73881 3.88552 3.97672 4.11610 4.19822 4.28736 4.53609 4.68804 4.74546 4.78989 4.83111 5.02359 5.04141 5.07737 5.23067 5.27708 5.32304 5.39582 5.77669 5.86764 6.19376 6.27332 6.84831 7.50117 8.47064 8.64792 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036903 B = 0.007326 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.566811 B = 3820.874153 C = 4285.992496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.540 3.460 10 O -0.610 6.610 11 N -0.710 5.710 12 C 0.088 3.912 13 C -0.141 4.141 14 C -0.225 4.225 15 H 0.086 0.914 16 C 0.086 3.914 17 O -0.350 6.350 18 C 0.109 3.891 19 C -0.150 4.150 20 C -0.116 4.116 21 C -0.124 4.124 22 H 0.274 0.726 23 H 0.397 0.603 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.205 -10.954 1.193 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.344 3.656 10 O -0.496 6.496 11 N -0.363 5.363 12 C -0.002 4.002 13 C -0.179 4.179 14 C -0.245 4.245 15 H 0.104 0.896 16 C 0.010 3.990 17 O -0.268 6.268 18 C 0.068 3.932 19 C -0.187 4.187 20 C -0.153 4.153 21 C -0.162 4.162 22 H 0.084 0.916 23 H 0.233 0.767 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.197 -11.099 1.157 13.279 hybrid contribution 0.007 1.350 0.157 1.359 sum 7.205 -9.749 1.314 12.193 Atomic orbital electron populations 1.70180 1.09395 1.28841 1.36373 1.26909 0.95512 1.04766 0.91250 0.84993 0.79423 0.75576 0.78460 1.16972 1.19414 1.19505 1.21422 0.94704 0.89938 1.54724 0.89566 1.18593 0.87116 0.83673 0.76204 1.90508 1.15563 1.87322 1.56209 1.45007 1.09057 1.02747 1.79447 1.21939 0.87376 0.87146 1.03764 1.23574 0.98031 1.02378 0.93930 1.24548 1.07789 0.99324 0.92873 0.89599 1.22954 0.95483 0.89093 0.91444 1.88910 1.47971 1.31499 1.58466 1.22302 0.88831 0.83812 0.98273 1.23277 0.94393 1.01222 0.99854 1.22803 0.98651 0.99290 0.94568 1.22936 0.95740 1.02152 0.95353 0.91620 0.76738 0.89114 0.88452 0.86902 0.90261 0.89167 0.90222 0.88925 0.88951 0.89962 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.47 11.83 21.84 0.26 -49.21 16 2 C 0.03 1.70 5.50 85.30 0.47 2.17 16 3 Si 1.00 40.53 29.56 68.60 2.03 42.56 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.57 -31.87 9.54 24.83 0.24 -31.63 16 8 H 0.09 4.32 7.85 -2.91 -0.02 4.30 16 9 C 0.54 30.68 7.62 86.36 0.66 31.34 16 10 O -0.61 -39.23 11.43 -4.32 -0.05 -39.28 16 11 N -0.71 -31.94 5.44 -423.41 -2.31 -34.24 16 12 C 0.09 3.53 3.14 4.43 0.01 3.54 16 13 C -0.14 -6.13 9.23 31.50 0.29 -5.84 16 14 C -0.22 -9.19 6.60 -8.83 -0.06 -9.25 16 15 H 0.09 4.12 7.88 -2.39 -0.02 4.10 16 16 C 0.09 2.64 7.54 72.48 0.55 3.19 16 17 O -0.35 -10.93 11.18 -148.98 -1.66 -12.59 16 18 C 0.11 3.36 1.00 -10.74 -0.01 3.35 16 19 C -0.15 -3.83 7.49 30.85 0.23 -3.60 16 20 C -0.12 -2.36 8.09 31.24 0.25 -2.11 16 21 C -0.12 -3.17 7.63 30.84 0.24 -2.93 16 22 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 23 H 0.40 15.40 7.28 -92.71 -0.68 14.73 16 24 H 0.09 4.83 5.86 -2.39 -0.01 4.82 16 25 H 0.10 3.71 8.12 -2.38 -0.02 3.70 16 26 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.09 2.37 6.59 -2.39 -0.02 2.35 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -71.69 272.99 1.58 -70.10 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.45 Total: 34.44 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 2.87 Total: -11.77 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.05 Total: -83.46 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.71 Total: -51.88 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -71.69 1.58 -70.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887128065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.874 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds