Wall clock time and date at job start Sun Mar 29 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42903 * 112.93846 * 235.93441 * 3 2 1 5 5 C 1.53939 * 113.74441 * 7.52323 * 3 2 1 6 6 N 1.47820 * 86.03398 * 90.88533 * 5 3 2 7 7 C 1.34771 * 134.45503 * 204.64814 * 6 5 3 8 8 O 1.21284 * 119.99715 * 179.86755 * 7 6 5 9 9 C 1.50703 * 120.00231 * 359.86223 * 7 6 5 10 10 C 1.53000 * 109.47021 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46789 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47008 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00118 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99908 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47180 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47196 * 120.00369 * 16 14 12 19 19 H 1.48502 * 109.47249 * 240.00131 * 16 14 12 20 20 C 1.47583 * 91.05012 * 24.54998 * 6 5 3 21 21 H 4.45200 * 5.14213 * 179.97438 * 4 1 2 22 22 H 0.96700 * 114.00311 * 50.33654 * 4 3 2 23 23 H 1.08998 * 113.77508 * 205.14398 * 5 3 2 24 24 H 1.08997 * 113.77355 * 336.55157 * 5 3 2 25 25 H 1.09004 * 109.47019 * 300.00283 * 9 7 6 26 26 H 1.08999 * 109.46686 * 60.00159 * 9 7 6 27 27 H 1.09004 * 109.47104 * 299.99801 * 10 9 7 28 28 H 1.08999 * 109.47611 * 60.00296 * 10 9 7 29 29 H 1.08999 * 109.47502 * 299.99656 * 11 10 9 30 30 H 1.09004 * 109.47172 * 60.00140 * 11 10 9 31 31 H 0.97007 * 120.00078 * 179.97438 * 15 14 12 32 32 H 1.08995 * 113.76666 * 221.15405 * 20 6 5 33 33 H 1.08995 * 113.86960 * 89.76510 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2027 0.7381 1.0902 5 6 3.2665 -1.3960 -0.1845 6 7 3.2461 -1.1011 -1.6328 7 6 3.2183 -1.8554 -2.7494 8 8 3.2043 -1.3243 -3.8397 9 6 3.2049 -3.3586 -2.6431 10 6 3.1741 -3.9687 -4.0459 11 6 3.1598 -5.4949 -3.9379 12 6 3.1288 -6.0959 -5.3196 13 1 3.1198 -5.4536 -6.1878 14 6 3.1120 -7.4657 -5.4753 15 7 3.1225 -8.2478 -4.4181 16 14 3.0730 -8.2106 -7.1879 17 1 3.0660 -7.1242 -8.2002 18 1 4.2735 -9.0624 -7.3848 19 1 1.8490 -9.0376 -7.3402 20 6 3.2657 0.3501 -1.3652 21 1 -1.0501 0.0000 -0.0003 22 1 2.8368 0.5006 1.9532 23 1 4.2700 -1.4894 0.2306 24 1 2.6061 -2.2123 0.1081 25 1 4.1010 -3.6940 -2.1209 26 1 2.3214 -3.6757 -2.0891 27 1 2.2781 -3.6334 -4.5684 28 1 4.0578 -3.6516 -4.5996 29 1 4.0554 -5.8306 -3.4153 30 1 2.2758 -5.8117 -3.3844 31 1 3.1103 -9.2116 -4.5276 32 1 2.6046 0.9253 -2.0134 33 1 4.2682 0.7726 -1.2974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890526708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:43 Heat of formation + Delta-G solvation = -2.711006 kcal Electronic energy + Delta-G solvation = -15959.803790 eV Core-core repulsion = 13181.369269 eV Total energy + Delta-G solvation = -2778.434521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69709 -38.36115 -35.70954 -34.18363 -33.00552 -32.03706 -29.45940 -27.45332 -26.53587 -23.98475 -22.71469 -20.27902 -19.54854 -18.71757 -17.24057 -16.72748 -16.30160 -15.89383 -15.43686 -14.68659 -14.40661 -14.29963 -13.73073 -13.19875 -13.05019 -12.60182 -12.29012 -11.86122 -11.79282 -11.36739 -11.25555 -10.98483 -10.81954 -10.59988 -10.51273 -10.29750 -9.70565 -9.67827 -9.28123 -9.01272 -8.82169 -8.31961 -5.97404 -3.98691 2.24483 2.29396 2.71499 2.87206 3.34144 3.41376 3.47431 3.57417 3.82770 4.22465 4.48783 4.59837 4.92809 5.13448 5.20483 5.27427 5.37521 5.38853 5.61215 5.64937 5.73660 5.82861 6.24774 6.72134 6.92737 7.06607 7.15206 7.16884 7.62068 7.71752 7.83587 8.03318 8.33704 8.47315 9.08551 9.65358 11.14187 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047493 B = 0.004065 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.413318 B = 6886.257418 C = 6985.437746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.212 4.212 3 C 0.204 3.796 4 O -0.535 6.535 5 C 0.089 3.911 6 N -0.648 5.648 7 C 0.542 3.458 8 O -0.531 6.531 9 C -0.130 4.130 10 C -0.096 4.096 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.057 0.943 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.128 3.872 21 H 0.224 0.776 22 H 0.386 0.614 23 H 0.104 0.896 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.089 0.911 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 15.784 14.167 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.212 4.212 3 C 0.162 3.838 4 O -0.340 6.340 5 C -0.035 4.035 6 N -0.388 5.388 7 C 0.334 3.666 8 O -0.406 6.406 9 C -0.170 4.170 10 C -0.134 4.134 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.005 3.995 21 H 0.241 0.759 22 H 0.235 0.765 23 H 0.122 0.878 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.798 16.031 12.931 20.674 hybrid contribution -0.549 -0.795 -0.290 1.009 sum -2.347 15.236 12.641 19.936 Atomic orbital electron populations 1.25087 0.95884 0.98382 0.97448 1.22625 0.93687 1.02126 1.02785 1.19436 0.82998 0.92466 0.88903 1.86614 1.65237 1.64639 1.17508 1.23935 1.01911 0.97033 0.80596 1.49822 1.75703 1.07400 1.05910 1.21001 0.74120 0.89920 0.81566 1.90697 1.49273 1.74629 1.26030 1.21812 1.03732 0.88444 1.03016 1.21481 1.01780 0.98527 0.91595 1.19137 0.97147 0.88116 0.97267 1.21312 1.49977 0.91462 0.92784 0.92494 1.25018 0.95380 0.97357 0.96757 1.69975 1.51320 1.03822 1.28654 0.86534 0.77521 0.79194 0.84782 1.19668 1.21028 1.21038 1.23090 1.01531 0.84247 0.90594 0.75915 0.76516 0.87840 0.89118 0.89303 0.89445 0.92645 0.92596 0.96555 0.96598 0.93130 0.89238 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.21 -2.16 12.59 -37.12 -0.47 -2.63 16 3 C 0.20 1.94 1.87 -92.48 -0.17 1.76 16 4 O -0.53 -4.21 13.48 -35.23 -0.47 -4.68 16 5 C 0.09 0.84 8.01 -2.84 -0.02 0.82 16 6 N -0.65 -8.76 3.52 -178.22 -0.63 -9.39 16 7 C 0.54 9.50 8.06 -10.99 -0.09 9.41 16 8 O -0.53 -11.37 16.71 5.55 0.09 -11.28 16 9 C -0.13 -2.28 5.45 -27.88 -0.15 -2.43 16 10 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 C 0.13 1.46 8.22 -2.97 -0.02 1.44 16 21 H 0.22 1.20 7.80 -54.08 -0.42 0.77 16 22 H 0.39 1.48 9.04 45.56 0.41 1.89 16 23 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 25 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -35.49 299.39 -5.58 -41.07 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.77 Total: -2.72 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.03 Total: -8.15 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.11 Total: -35.88 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.38 Total: -15.96 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.49 -5.58 -41.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890526708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.361 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds