Wall clock time and date at job start Sun Mar 29 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42903 * 112.93846 * 235.93441 * 3 2 1 5 5 C 1.53939 * 113.74441 * 7.52323 * 3 2 1 6 6 N 1.47820 * 86.03398 * 90.88533 * 5 3 2 7 7 C 1.34771 * 134.45503 * 204.64814 * 6 5 3 8 8 O 1.21284 * 119.99715 * 179.86755 * 7 6 5 9 9 C 1.50703 * 120.00231 * 359.86223 * 7 6 5 10 10 C 1.53000 * 109.47021 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46789 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47008 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00118 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99908 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47180 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47196 * 120.00369 * 16 14 12 19 19 H 1.48502 * 109.47249 * 240.00131 * 16 14 12 20 20 C 1.47583 * 91.05012 * 24.54998 * 6 5 3 21 21 H 4.45200 * 5.14213 * 179.97438 * 4 1 2 22 22 H 0.96700 * 114.00311 * 50.33654 * 4 3 2 23 23 H 1.08998 * 113.77508 * 205.14398 * 5 3 2 24 24 H 1.08997 * 113.77355 * 336.55157 * 5 3 2 25 25 H 1.09004 * 109.47019 * 300.00283 * 9 7 6 26 26 H 1.08999 * 109.46686 * 60.00159 * 9 7 6 27 27 H 1.09004 * 109.47104 * 299.99801 * 10 9 7 28 28 H 1.08999 * 109.47611 * 60.00296 * 10 9 7 29 29 H 1.08999 * 109.47502 * 299.99656 * 11 10 9 30 30 H 1.09004 * 109.47172 * 60.00140 * 11 10 9 31 31 H 0.97007 * 120.00078 * 179.97438 * 15 14 12 32 32 H 1.08995 * 113.76666 * 221.15405 * 20 6 5 33 33 H 1.08995 * 113.86960 * 89.76510 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2027 0.7381 1.0902 5 6 3.2665 -1.3960 -0.1845 6 7 3.2461 -1.1011 -1.6328 7 6 3.2183 -1.8554 -2.7494 8 8 3.2043 -1.3243 -3.8397 9 6 3.2049 -3.3586 -2.6431 10 6 3.1741 -3.9687 -4.0459 11 6 3.1598 -5.4949 -3.9379 12 6 3.1288 -6.0959 -5.3196 13 1 3.1198 -5.4536 -6.1878 14 6 3.1120 -7.4657 -5.4753 15 7 3.1225 -8.2478 -4.4181 16 14 3.0730 -8.2106 -7.1879 17 1 3.0660 -7.1242 -8.2002 18 1 4.2735 -9.0624 -7.3848 19 1 1.8490 -9.0376 -7.3402 20 6 3.2657 0.3501 -1.3652 21 1 -1.0501 0.0000 -0.0003 22 1 2.8368 0.5006 1.9532 23 1 4.2700 -1.4894 0.2306 24 1 2.6061 -2.2123 0.1081 25 1 4.1010 -3.6940 -2.1209 26 1 2.3214 -3.6757 -2.0891 27 1 2.2781 -3.6334 -4.5684 28 1 4.0578 -3.6516 -4.5996 29 1 4.0554 -5.8306 -3.4153 30 1 2.2758 -5.8117 -3.3844 31 1 3.1103 -9.2116 -4.5276 32 1 2.6046 0.9253 -2.0134 33 1 4.2682 0.7726 -1.2974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890526708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:43 Heat of formation + Delta-G solvation = -28.907630 kcal Electronic energy + Delta-G solvation = -15960.939761 eV Core-core repulsion = 13181.369269 eV Total energy + Delta-G solvation = -2779.570492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67202 -39.58662 -36.52067 -36.12981 -34.06111 -33.69848 -30.84002 -29.00320 -27.46969 -25.71323 -23.84152 -22.03541 -20.55313 -19.64202 -18.58043 -18.17561 -17.54246 -17.06878 -16.67118 -16.45609 -15.82789 -15.27419 -14.90561 -14.49459 -14.28828 -14.00180 -13.74423 -13.56242 -13.12366 -12.72241 -12.66018 -12.50076 -12.39610 -11.96265 -11.69313 -11.59977 -11.50540 -11.28739 -11.03983 -10.79188 -10.55429 -9.90501 -8.21089 -6.31070 1.39318 1.39592 1.46624 1.50758 1.53711 1.57023 1.79774 2.41344 2.88237 3.12009 3.13912 3.48402 3.49661 4.09719 4.14698 4.20057 4.35390 4.42242 4.49519 4.60311 4.62104 4.84637 4.91477 5.02631 5.07235 5.16617 5.52282 5.72625 5.84680 6.26025 6.44825 6.51444 6.66246 6.83918 7.03418 7.37726 8.90727 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047493 B = 0.004065 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.413318 B = 6886.257418 C = 6985.437746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.250 4.250 3 C 0.220 3.780 4 O -0.536 6.536 5 C 0.090 3.910 6 N -0.649 5.649 7 C 0.541 3.459 8 O -0.583 6.583 9 C -0.120 4.120 10 C -0.083 4.083 11 C 0.027 3.973 12 C -0.548 4.548 13 H 0.051 0.949 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.117 3.883 21 H 0.252 0.748 22 H 0.405 0.595 23 H 0.128 0.872 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.265 0.735 32 H 0.078 0.922 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 15.997 15.225 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.251 4.251 3 C 0.178 3.822 4 O -0.345 6.345 5 C -0.032 4.032 6 N -0.386 5.386 7 C 0.333 3.667 8 O -0.463 6.463 9 C -0.160 4.160 10 C -0.121 4.121 11 C -0.010 4.010 12 C -0.586 4.586 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.005 4.005 21 H 0.268 0.732 22 H 0.257 0.743 23 H 0.146 0.854 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.011 16.262 14.071 21.598 hybrid contribution -0.516 -0.805 -0.500 1.079 sum -2.527 15.457 13.570 20.724 Atomic orbital electron populations 1.25911 0.96804 0.96946 0.96050 1.23022 0.94446 1.03493 1.04129 1.19018 0.82727 0.92087 0.88393 1.86572 1.65270 1.64369 1.18263 1.24261 1.03669 0.97630 0.77630 1.49748 1.73538 1.08598 1.06705 1.20775 0.74086 0.89943 0.81885 1.90670 1.52116 1.75365 1.28166 1.21610 1.05526 0.88800 1.00045 1.21188 1.00359 0.95976 0.94577 1.19013 0.95632 0.90669 0.95701 1.21707 1.50742 0.92238 0.93900 0.93112 1.25893 0.94615 0.97726 1.01127 1.70071 1.51581 1.04362 1.30887 0.85441 0.78060 0.78310 0.79505 1.19302 1.19996 1.19995 1.23317 1.02501 0.82812 0.91866 0.73206 0.74285 0.85377 0.87969 0.87330 0.87748 0.94134 0.93967 0.97895 0.97999 0.92620 0.90381 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 19.25 74.32 1.43 -0.76 16 2 C -0.25 -4.64 12.59 31.13 0.39 -4.25 16 3 C 0.22 3.72 1.87 -11.94 -0.02 3.70 16 4 O -0.54 -7.03 13.48 -148.98 -2.01 -9.04 16 5 C 0.09 1.48 8.01 86.44 0.69 2.17 16 6 N -0.65 -16.72 3.52 -839.99 -2.96 -19.68 16 7 C 0.54 18.84 8.06 87.66 0.71 19.55 16 8 O -0.58 -25.57 16.71 -3.04 -0.05 -25.62 16 9 C -0.12 -4.13 5.45 29.85 0.16 -3.97 16 10 C -0.08 -3.76 4.44 30.59 0.14 -3.62 16 11 C 0.03 1.45 4.97 29.85 0.15 1.59 16 12 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 16 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 C 0.12 2.54 8.22 86.49 0.71 3.25 16 21 H 0.25 2.00 7.80 -4.41 -0.03 1.97 16 22 H 0.41 1.92 9.04 -74.06 -0.67 1.25 16 23 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 25 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 26 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.04 1.92 8.10 -2.38 -0.02 1.90 16 28 H 0.04 1.99 8.10 -2.39 -0.02 1.97 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 32 H 0.08 1.86 8.08 -2.39 -0.02 1.85 16 33 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -77.10 299.39 2.78 -74.32 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 0.43 Total: 2.69 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 5.05 Total: -13.95 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -2.67 Total: -75.84 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -2.06 Total: -34.66 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.10 2.78 -74.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890526708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.417 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds