Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 115.55415 * 2 1 4 4 N 1.46900 * 109.47305 * 34.32359 * 3 2 1 5 5 C 1.46898 * 111.00124 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47330 * 325.00076 * 5 4 3 7 7 C 1.50708 * 109.47123 * 205.00379 * 5 4 3 8 8 H 1.08001 * 119.99714 * 275.01063 * 7 5 4 9 9 C 1.37871 * 119.99927 * 95.01137 * 7 5 4 10 10 N 1.31520 * 119.99640 * 184.92423 * 9 7 5 11 11 Si 1.86801 * 120.00261 * 4.91695 * 9 7 5 12 12 H 1.48500 * 109.46896 * 84.83478 * 11 9 7 13 13 H 1.48501 * 109.47329 * 204.83858 * 11 9 7 14 14 H 1.48499 * 109.47131 * 324.84065 * 11 9 7 15 15 C 1.53005 * 109.46956 * 85.00562 * 5 4 3 16 16 F 1.39904 * 109.47082 * 174.66829 * 15 5 4 17 17 F 1.39895 * 109.46902 * 294.66876 * 15 5 4 18 18 F 1.39899 * 109.47081 * 54.66858 * 15 5 4 19 19 C 1.52997 * 117.51618 * 145.69841 * 2 1 3 20 20 C 1.52993 * 60.00153 * 107.48002 * 19 2 1 21 21 H 1.09002 * 109.47165 * 85.58261 * 1 2 3 22 22 H 1.08997 * 109.47372 * 205.58839 * 1 2 3 23 23 H 1.09004 * 109.46721 * 325.58840 * 1 2 3 24 24 H 1.09001 * 109.46797 * 274.32871 * 3 2 1 25 25 H 1.09000 * 109.47573 * 154.32787 * 3 2 1 26 26 H 1.00905 * 110.99240 * 56.05138 * 4 3 2 27 27 H 0.96996 * 119.99363 * 179.97438 * 10 9 7 28 28 H 1.09003 * 117.50164 * 214.96878 * 19 2 1 29 29 H 1.09006 * 117.49911 * 359.97438 * 19 2 1 30 30 H 1.09004 * 117.50151 * 252.50982 * 20 19 2 31 31 H 1.08999 * 117.49691 * 107.48919 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3693 2.3155 0.7809 5 6 1.9732 3.6544 0.8025 6 1 3.0592 3.5629 0.8200 7 6 1.5116 4.3940 2.0319 8 1 0.5741 4.9300 2.0193 9 6 2.2862 4.3862 3.1724 10 7 1.8398 4.9489 4.2742 11 14 3.9694 3.5764 3.1530 12 1 4.9768 4.5408 2.6427 13 1 4.3350 3.1613 4.5311 14 1 3.9345 2.3833 2.2695 15 6 1.5464 4.4266 -0.4475 16 9 2.0207 5.7404 -0.3687 17 9 2.0780 3.8062 -1.5830 18 9 0.1501 4.4393 -0.5337 19 6 2.2368 -1.1209 0.7647 20 6 2.2364 -1.1208 -0.7653 21 1 -0.3633 0.0792 -1.0246 22 1 -0.3634 -0.9268 0.4438 23 1 -0.3633 0.8479 0.5808 24 1 2.2767 1.7415 -1.0248 25 1 3.1823 1.3086 0.4452 26 1 1.2202 1.9705 1.7174 27 1 2.3846 4.9431 5.0767 28 1 3.1720 -0.8750 1.2677 29 1 1.6118 -1.8584 1.2683 30 1 1.6111 -1.8584 -1.2685 31 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896698614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = -139.497325 kcal Electronic energy + Delta-G solvation = -17953.855642 eV Core-core repulsion = 14627.632881 eV Total energy + Delta-G solvation = -3326.222761 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.99235 -46.58480 -46.38445 -38.22869 -35.30390 -32.45943 -29.32652 -27.75859 -24.89681 -24.36922 -22.26793 -20.80286 -18.82665 -17.87820 -17.46530 -16.55415 -16.38537 -15.44406 -14.71767 -14.11864 -13.91543 -13.50669 -13.41757 -13.32379 -12.93420 -12.88453 -12.65271 -12.63747 -12.53721 -12.15488 -11.73377 -11.60838 -11.21355 -11.09669 -10.78475 -10.33794 -10.19089 -9.98317 -9.61541 -9.31044 -8.94009 -7.74676 -6.41273 -4.49473 3.05054 3.12137 3.16456 3.89417 3.95254 4.09495 4.52645 4.94193 4.96874 5.07965 5.16553 5.26666 5.41385 5.43802 5.75372 5.80266 5.96544 6.00633 6.04605 6.13462 6.26466 6.28784 6.38452 6.48921 6.80471 7.00537 7.71965 8.05345 8.27200 8.68546 9.14593 10.69688 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.011817 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.983598 B = 2368.929131 C = 3166.842597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C 0.076 3.924 4 N -0.677 5.677 5 C 0.151 3.849 6 H 0.043 0.957 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.089 3.911 10 N -0.871 5.871 11 Si 0.869 3.131 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.459 3.541 16 F -0.187 7.187 17 F -0.209 7.209 18 F -0.181 7.181 19 C -0.182 4.182 20 C -0.179 4.179 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.357 0.643 27 H 0.272 0.728 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -8.499 -7.099 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.115 4.115 3 C -0.053 4.053 4 N -0.312 5.312 5 C 0.042 3.958 6 H 0.060 0.940 7 C -0.564 4.564 8 H 0.110 0.890 9 C -0.118 4.118 10 N -0.505 5.505 11 Si 0.695 3.305 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.190 1.190 15 C 0.404 3.596 16 F -0.169 7.169 17 F -0.191 7.191 18 F -0.163 7.163 19 C -0.219 4.219 20 C -0.217 4.217 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.095 0.905 25 H 0.044 0.956 26 H 0.179 0.821 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.172 -8.282 -7.424 11.184 hybrid contribution 1.697 -0.463 0.456 1.817 sum 2.869 -8.745 -6.968 11.544 Atomic orbital electron populations 1.21259 0.91357 1.02134 1.01937 1.21557 0.95710 0.90379 1.03831 1.21759 0.93742 0.90231 0.99553 1.60672 1.48547 1.01327 1.20637 1.20454 0.95210 0.88639 0.91512 0.94003 1.20681 1.09172 1.32961 0.93543 0.89044 1.24991 0.97590 0.94174 0.95067 1.69857 1.37399 1.42156 1.01122 0.86996 0.85055 0.80482 0.78002 1.19380 1.20594 1.19031 1.21144 0.74943 0.78273 0.85264 1.93097 1.88414 1.38918 1.96438 1.93025 1.86660 1.82723 1.56703 1.93081 1.30135 1.96431 1.96628 1.23152 1.02528 1.02035 0.94149 1.22978 1.02459 1.01935 0.94302 0.92874 0.93752 0.89544 0.90471 0.95632 0.82083 0.91810 0.89313 0.89057 0.89060 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.73 37.16 0.36 -1.24 16 2 C -0.11 -1.73 2.50 -154.51 -0.39 -2.12 16 3 C 0.08 1.36 5.55 -3.83 -0.02 1.34 16 4 N -0.68 -13.77 4.66 -107.95 -0.50 -14.27 16 5 C 0.15 3.44 1.76 -68.86 -0.12 3.32 16 6 H 0.04 0.96 4.95 -51.93 -0.26 0.71 16 7 C -0.53 -13.81 8.31 -34.44 -0.29 -14.10 16 8 H 0.09 2.68 8.01 -52.49 -0.42 2.26 16 9 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 10 N -0.87 -24.59 13.96 55.43 0.77 -23.82 16 11 Si 0.87 19.69 26.99 -169.99 -4.59 15.11 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -5.71 6.24 56.52 0.35 -5.36 16 15 C 0.46 10.19 2.83 37.16 0.11 10.29 16 16 F -0.19 -4.28 16.89 2.25 0.04 -4.24 16 17 F -0.21 -4.27 15.24 2.25 0.03 -4.23 16 18 F -0.18 -4.11 16.94 2.25 0.04 -4.07 16 19 C -0.18 -2.46 9.82 -26.74 -0.26 -2.72 16 20 C -0.18 -2.30 9.97 -26.74 -0.27 -2.57 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.57 7.90 -51.93 -0.41 0.16 16 23 H 0.09 1.42 6.70 -51.93 -0.35 1.07 16 24 H 0.08 1.40 6.18 -51.93 -0.32 1.08 16 25 H 0.03 0.47 7.24 -51.93 -0.38 0.10 16 26 H 0.36 7.41 8.23 -39.29 -0.32 7.09 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 269.12 15.07 4.06 4.06 Total: -1.00 -26.70 269.12 -4.87 -31.57 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.74 Total: 5.43 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.98 Total: -5.53 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.27 Total: -38.09 kcal Atomic # 9 Polarization: -12.65 SS G_CDS: 0.11 Total: -12.54 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.59 Total: 15.11 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.70 -4.87 -31.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896698614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.927 kcal (2) G-P(sol) polarization free energy of solvation -26.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds