Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 115.55415 * 2 1 4 4 N 1.46900 * 109.47305 * 34.32359 * 3 2 1 5 5 C 1.46898 * 111.00124 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47330 * 325.00076 * 5 4 3 7 7 C 1.50708 * 109.47123 * 205.00379 * 5 4 3 8 8 H 1.08001 * 119.99714 * 275.01063 * 7 5 4 9 9 C 1.37871 * 119.99927 * 95.01137 * 7 5 4 10 10 N 1.31520 * 119.99640 * 184.92423 * 9 7 5 11 11 Si 1.86801 * 120.00261 * 4.91695 * 9 7 5 12 12 H 1.48500 * 109.46896 * 84.83478 * 11 9 7 13 13 H 1.48501 * 109.47329 * 204.83858 * 11 9 7 14 14 H 1.48499 * 109.47131 * 324.84065 * 11 9 7 15 15 C 1.53005 * 109.46956 * 85.00562 * 5 4 3 16 16 F 1.39904 * 109.47082 * 174.66829 * 15 5 4 17 17 F 1.39895 * 109.46902 * 294.66876 * 15 5 4 18 18 F 1.39899 * 109.47081 * 54.66858 * 15 5 4 19 19 C 1.52997 * 117.51618 * 145.69841 * 2 1 3 20 20 C 1.52993 * 60.00153 * 107.48002 * 19 2 1 21 21 H 1.09002 * 109.47165 * 85.58261 * 1 2 3 22 22 H 1.08997 * 109.47372 * 205.58839 * 1 2 3 23 23 H 1.09004 * 109.46721 * 325.58840 * 1 2 3 24 24 H 1.09001 * 109.46797 * 274.32871 * 3 2 1 25 25 H 1.09000 * 109.47573 * 154.32787 * 3 2 1 26 26 H 1.00905 * 110.99240 * 56.05138 * 4 3 2 27 27 H 0.96996 * 119.99363 * 179.97438 * 10 9 7 28 28 H 1.09003 * 117.50164 * 214.96878 * 19 2 1 29 29 H 1.09006 * 117.49911 * 359.97438 * 19 2 1 30 30 H 1.09004 * 117.50151 * 252.50982 * 20 19 2 31 31 H 1.08999 * 117.49691 * 107.48919 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3693 2.3155 0.7809 5 6 1.9732 3.6544 0.8025 6 1 3.0592 3.5629 0.8200 7 6 1.5116 4.3940 2.0319 8 1 0.5741 4.9300 2.0193 9 6 2.2862 4.3862 3.1724 10 7 1.8398 4.9489 4.2742 11 14 3.9694 3.5764 3.1530 12 1 4.9768 4.5408 2.6427 13 1 4.3350 3.1613 4.5311 14 1 3.9345 2.3833 2.2695 15 6 1.5464 4.4266 -0.4475 16 9 2.0207 5.7404 -0.3687 17 9 2.0780 3.8062 -1.5830 18 9 0.1501 4.4393 -0.5337 19 6 2.2368 -1.1209 0.7647 20 6 2.2364 -1.1208 -0.7653 21 1 -0.3633 0.0792 -1.0246 22 1 -0.3634 -0.9268 0.4438 23 1 -0.3633 0.8479 0.5808 24 1 2.2767 1.7415 -1.0248 25 1 3.1823 1.3086 0.4452 26 1 1.2202 1.9705 1.7174 27 1 2.3846 4.9431 5.0767 28 1 3.1720 -0.8750 1.2677 29 1 1.6118 -1.8584 1.2683 30 1 1.6111 -1.8584 -1.2685 31 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896698614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = -155.362554 kcal Electronic energy + Delta-G solvation = -17954.543610 eV Core-core repulsion = 14627.632881 eV Total energy + Delta-G solvation = -3326.910729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.79137 -48.35330 -48.22275 -39.45088 -36.96251 -34.40887 -30.96869 -28.98583 -26.83686 -25.89500 -23.28747 -22.61578 -20.25822 -19.55264 -19.26520 -18.44891 -18.19964 -16.89604 -16.23816 -15.65675 -15.45989 -15.25976 -15.08830 -14.88047 -14.71755 -14.68444 -14.47004 -14.42089 -13.87906 -13.57534 -13.28033 -12.99184 -12.80421 -12.29221 -12.23825 -11.99770 -11.92190 -11.67738 -11.06290 -10.93203 -10.45328 -9.38534 -8.46059 -6.60036 1.25649 1.30036 1.36550 2.09783 2.18241 2.69604 2.89982 3.11840 3.45200 3.51001 3.76041 3.90837 4.07881 4.17175 4.29589 4.36215 4.68121 4.71975 4.79409 5.00924 5.05467 5.08062 5.17027 5.27969 5.29886 5.61734 5.91857 6.18163 6.49313 6.58450 7.07609 8.68822 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.011817 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.983598 B = 2368.929131 C = 3166.842597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C 0.078 3.922 4 N -0.676 5.676 5 C 0.157 3.843 6 H 0.048 0.952 7 C -0.531 4.531 8 H 0.047 0.953 9 C 0.041 3.959 10 N -0.917 5.917 11 Si 0.931 3.069 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.245 1.245 15 C 0.460 3.540 16 F -0.192 7.192 17 F -0.195 7.195 18 F -0.186 7.186 19 C -0.178 4.178 20 C -0.160 4.160 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.355 0.645 27 H 0.276 0.724 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -10.620 -8.068 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.051 4.051 4 N -0.310 5.310 5 C 0.046 3.954 6 H 0.065 0.935 7 C -0.569 4.569 8 H 0.066 0.934 9 C -0.162 4.162 10 N -0.553 5.553 11 Si 0.754 3.246 12 H -0.189 1.189 13 H -0.201 1.201 14 H -0.169 1.169 15 C 0.405 3.595 16 F -0.174 7.174 17 F -0.176 7.176 18 F -0.168 7.168 19 C -0.215 4.215 20 C -0.198 4.198 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.176 0.824 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.443 -10.414 -8.417 13.611 hybrid contribution 1.223 0.213 0.715 1.433 sum 3.666 -10.200 -7.702 13.297 Atomic orbital electron populations 1.21188 0.91208 1.02017 1.01802 1.21483 0.95882 0.89526 1.06928 1.21783 0.93447 0.91224 0.98619 1.60532 1.48909 1.00775 1.20753 1.20301 0.95403 0.89520 0.90133 0.93456 1.20651 1.07687 1.33211 0.95347 0.93434 1.25752 1.01390 0.94668 0.94361 1.69980 1.39248 1.44055 1.02042 0.85995 0.79871 0.80184 0.78588 1.18948 1.20079 1.16905 1.21045 0.74771 0.78056 0.85661 1.93086 1.88435 1.39378 1.96507 1.93049 1.86385 1.82381 1.55822 1.93071 1.30597 1.96436 1.96673 1.23226 1.02207 1.01112 0.94923 1.23073 1.02365 1.00291 0.94025 0.92650 0.91923 0.91979 0.90785 0.95794 0.82384 0.91492 0.89640 0.87651 0.87206 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.85 9.73 71.98 0.70 -2.15 16 2 C -0.14 -3.80 2.50 -52.18 -0.13 -3.93 16 3 C 0.08 2.62 5.55 86.30 0.48 3.10 16 4 N -0.68 -26.85 4.66 -495.44 -2.31 -29.16 16 5 C 0.16 7.04 1.76 44.17 0.08 7.11 16 6 H 0.05 2.09 4.95 -2.39 -0.01 2.08 16 7 C -0.53 -28.42 8.31 25.60 0.21 -28.20 16 8 H 0.05 2.91 8.01 -2.91 -0.02 2.89 16 9 C 0.04 2.20 5.47 84.65 0.46 2.67 16 10 N -0.92 -52.85 13.96 21.45 0.30 -52.55 16 11 Si 0.93 39.88 26.99 68.60 1.85 41.73 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.25 -9.61 6.24 99.48 0.62 -8.99 16 15 C 0.46 20.16 2.83 71.98 0.20 20.36 16 16 F -0.19 -8.75 16.89 44.97 0.76 -7.99 16 17 F -0.19 -7.62 15.24 44.97 0.69 -6.93 16 18 F -0.19 -8.47 16.94 44.97 0.76 -7.71 16 19 C -0.18 -4.20 9.82 30.59 0.30 -3.90 16 20 C -0.16 -3.50 9.97 30.59 0.31 -3.20 16 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.44 7.90 -2.39 -0.02 1.42 16 23 H 0.06 1.98 6.70 -2.39 -0.02 1.96 16 24 H 0.07 2.51 6.18 -2.39 -0.01 2.50 16 25 H 0.02 0.81 7.24 -2.39 -0.02 0.80 16 26 H 0.35 14.50 8.23 -89.69 -0.74 13.76 16 27 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 29 H 0.11 2.19 8.05 -2.38 -0.02 2.17 16 30 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -57.03 269.12 4.99 -52.04 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.33 Total: 18.71 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 2.61 Total: -8.14 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.01 Total: -81.71 kcal Atomic # 9 Polarization: -24.84 SS G_CDS: 2.21 Total: -22.63 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.85 Total: 41.73 kcal Total: -57.03 4.99 -52.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896698614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.321 kcal (2) G-P(sol) polarization free energy of solvation -57.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds