Wall clock time and date at job start Sun Mar 29 2020 21:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 115.54993 * 2 1 4 4 N 1.46901 * 109.46916 * 34.32601 * 3 2 1 5 5 C 1.46905 * 110.99870 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46962 * 34.99990 * 5 4 3 7 7 C 1.50696 * 109.47161 * 155.00107 * 5 4 3 8 8 H 1.08005 * 119.99735 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00295 * 180.02562 * 7 5 4 10 10 N 1.31514 * 119.99693 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00152 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47063 * 59.99743 * 11 9 7 13 13 H 1.48498 * 109.46900 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47092 * 299.99687 * 11 9 7 15 15 C 1.52999 * 109.47094 * 274.99984 * 5 4 3 16 16 F 1.39908 * 109.47039 * 60.00152 * 15 5 4 17 17 F 1.39904 * 109.46931 * 179.97438 * 15 5 4 18 18 F 1.39899 * 109.47581 * 300.00121 * 15 5 4 19 19 C 1.53004 * 117.52044 * 145.69648 * 2 1 3 20 20 C 1.53001 * 117.50356 * 214.33143 * 2 1 3 21 21 H 1.09002 * 109.46775 * 85.58301 * 1 2 3 22 22 H 1.09004 * 109.47374 * 205.58142 * 1 2 3 23 23 H 1.08996 * 109.47350 * 325.58774 * 1 2 3 24 24 H 1.09004 * 109.46889 * 274.32982 * 3 2 1 25 25 H 1.08995 * 109.47384 * 154.32622 * 3 2 1 26 26 H 1.00901 * 111.00067 * 303.95263 * 4 3 2 27 27 H 0.96996 * 119.99950 * 180.02562 * 10 9 7 28 28 H 1.08994 * 117.49968 * 214.97064 * 19 2 1 29 29 H 1.08994 * 117.49242 * 0.02562 * 19 2 1 30 30 H 1.09000 * 117.49637 * 359.96924 * 20 2 1 31 31 H 1.08995 * 117.50218 * 144.99549 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.3691 2.3155 0.7810 5 6 1.9729 3.6545 0.8026 6 1 2.4588 3.8494 -0.1535 7 6 0.9000 4.6856 1.0402 8 1 -0.1277 4.3771 1.1633 9 6 1.2301 6.0230 1.1005 10 7 2.4815 6.3987 0.9501 11 14 -0.0998 7.3010 1.3957 12 1 -0.7608 7.0356 2.6988 13 1 0.5106 8.6546 1.4175 14 1 -1.1063 7.2288 0.3063 15 6 3.0091 3.7286 1.9258 16 9 4.0053 2.7713 1.7052 17 9 3.5846 5.0037 1.9460 18 9 2.3856 3.4784 3.1529 19 6 2.2369 -1.1209 0.7647 20 6 2.2365 -1.1207 -0.7654 21 1 -0.3633 0.0791 -1.0247 22 1 -0.3634 -0.9269 0.4437 23 1 -0.3634 0.8478 0.5807 24 1 2.2765 1.7417 -1.0248 25 1 3.1822 1.3088 0.4452 26 1 0.4249 2.3506 0.4269 27 1 2.7138 7.3394 0.9928 28 1 3.1721 -0.8749 1.2677 29 1 1.6120 -1.8588 1.2676 30 1 1.6113 -1.8583 -1.2685 31 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896698615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:42 Heat of formation + Delta-G solvation = -114.888070 kcal Electronic energy + Delta-G solvation = -18022.781010 eV Core-core repulsion = 14697.625386 eV Total energy + Delta-G solvation = -3325.155624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.26121 -45.92319 -45.50457 -38.19106 -35.07530 -32.49628 -28.91478 -27.64615 -24.50591 -24.32385 -22.19929 -20.71646 -18.74300 -17.17686 -16.73284 -16.53367 -15.58882 -15.06470 -14.86191 -14.34341 -13.69498 -13.20597 -12.99916 -12.87577 -12.66309 -12.37941 -12.21646 -12.16579 -11.88777 -11.77150 -11.46142 -11.25838 -11.04422 -10.83617 -10.69422 -10.46350 -10.17080 -9.81357 -9.45244 -9.27972 -8.62454 -7.58030 -6.15466 -4.36077 3.23952 3.28990 3.31518 3.99131 4.25359 4.59319 4.82930 5.00622 5.04189 5.14703 5.32248 5.44942 5.80668 5.88889 5.91257 5.97764 6.07348 6.10643 6.21358 6.28049 6.34703 6.40692 6.46361 6.67629 6.92747 7.53319 7.70212 7.91774 8.30761 8.67835 9.30294 10.76933 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.031437 B = 0.008664 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.462227 B = 3231.152710 C = 3756.071010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C 0.084 3.916 4 N -0.679 5.679 5 C 0.186 3.814 6 H 0.039 0.961 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.061 3.939 10 N -0.846 5.846 11 Si 0.911 3.089 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.439 3.561 16 F -0.231 7.231 17 F -0.142 7.142 18 F -0.200 7.200 19 C -0.170 4.170 20 C -0.183 4.183 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.027 0.973 25 H 0.080 0.920 26 H 0.348 0.652 27 H 0.265 0.735 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -8.878 -2.291 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.116 4.116 3 C -0.045 4.045 4 N -0.313 5.313 5 C 0.075 3.925 6 H 0.056 0.944 7 C -0.576 4.576 8 H 0.092 0.908 9 C -0.146 4.146 10 N -0.481 5.481 11 Si 0.737 3.263 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.383 3.617 16 F -0.213 7.213 17 F -0.124 7.124 18 F -0.181 7.181 19 C -0.207 4.207 20 C -0.221 4.221 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.098 0.902 26 H 0.169 0.831 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.692 -8.866 -1.677 9.049 hybrid contribution -0.470 0.950 -0.464 1.157 sum -1.162 -7.915 -2.140 8.282 Atomic orbital electron populations 1.21342 0.92299 1.02484 1.01411 1.21478 0.94919 0.91044 1.04122 1.21694 0.97559 0.89690 0.95576 1.60315 1.05764 1.08760 1.56477 1.20067 0.93384 0.87165 0.91846 0.94365 1.20860 0.93595 0.89900 1.53295 0.90769 1.25115 0.95998 0.99033 0.94487 1.70382 1.15973 1.16835 1.44874 0.86344 0.81114 0.79726 0.79069 1.19841 1.21032 1.19941 1.22563 0.81177 0.73146 0.84766 1.92946 1.66474 1.66981 1.94875 1.93395 1.85803 1.36811 1.96344 1.92995 1.82983 1.94250 1.47909 1.23076 1.02606 1.01321 0.93690 1.23018 1.02512 1.01817 0.94710 0.92825 0.92948 0.90435 0.95452 0.90220 0.83065 0.92397 0.88907 0.89288 0.89225 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.52 37.16 0.35 -1.26 16 2 C -0.12 -1.74 2.57 -154.51 -0.40 -2.14 16 3 C 0.08 1.54 5.57 -3.82 -0.02 1.52 16 4 N -0.68 -14.23 5.84 -107.95 -0.63 -14.86 16 5 C 0.19 4.61 2.26 -68.86 -0.16 4.46 16 6 H 0.04 1.01 7.80 -51.93 -0.40 0.61 16 7 C -0.54 -14.20 8.33 -34.44 -0.29 -14.49 16 8 H 0.07 1.89 7.62 -52.48 -0.40 1.49 16 9 C 0.06 1.63 5.20 -17.82 -0.09 1.54 16 10 N -0.85 -23.55 9.51 55.43 0.53 -23.02 16 11 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.44 11.34 2.81 37.16 0.10 11.44 16 16 F -0.23 -5.53 15.04 2.25 0.03 -5.50 16 17 F -0.14 -3.97 12.92 2.25 0.03 -3.94 16 18 F -0.20 -5.25 16.95 2.25 0.04 -5.21 16 19 C -0.17 -2.34 9.82 -26.72 -0.26 -2.61 16 20 C -0.18 -2.34 9.97 -26.73 -0.27 -2.60 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 23 H 0.08 1.15 5.84 -51.93 -0.30 0.85 16 24 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 25 H 0.08 1.55 5.78 -51.93 -0.30 1.25 16 26 H 0.35 6.84 6.04 -39.29 -0.24 6.60 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.09 1.33 8.05 -51.93 -0.42 0.92 16 29 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -27.79 265.02 -5.77 -33.56 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.71 Total: 3.47 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.02 Total: -4.14 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.10 Total: -37.88 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.79 -5.77 -33.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896698615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.331 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds