Wall clock time and date at job start Sun Mar 29 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 115.54993 * 2 1 4 4 N 1.46901 * 109.46916 * 34.32601 * 3 2 1 5 5 C 1.46905 * 110.99870 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46962 * 34.99990 * 5 4 3 7 7 C 1.50696 * 109.47161 * 155.00107 * 5 4 3 8 8 H 1.08005 * 119.99735 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00295 * 180.02562 * 7 5 4 10 10 N 1.31514 * 119.99693 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00152 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47063 * 59.99743 * 11 9 7 13 13 H 1.48498 * 109.46900 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47092 * 299.99687 * 11 9 7 15 15 C 1.52999 * 109.47094 * 274.99984 * 5 4 3 16 16 F 1.39908 * 109.47039 * 60.00152 * 15 5 4 17 17 F 1.39904 * 109.46931 * 179.97438 * 15 5 4 18 18 F 1.39899 * 109.47581 * 300.00121 * 15 5 4 19 19 C 1.53004 * 117.52044 * 145.69648 * 2 1 3 20 20 C 1.53001 * 117.50356 * 214.33143 * 2 1 3 21 21 H 1.09002 * 109.46775 * 85.58301 * 1 2 3 22 22 H 1.09004 * 109.47374 * 205.58142 * 1 2 3 23 23 H 1.08996 * 109.47350 * 325.58774 * 1 2 3 24 24 H 1.09004 * 109.46889 * 274.32982 * 3 2 1 25 25 H 1.08995 * 109.47384 * 154.32622 * 3 2 1 26 26 H 1.00901 * 111.00067 * 303.95263 * 4 3 2 27 27 H 0.96996 * 119.99950 * 180.02562 * 10 9 7 28 28 H 1.08994 * 117.49968 * 214.97064 * 19 2 1 29 29 H 1.08994 * 117.49242 * 0.02562 * 19 2 1 30 30 H 1.09000 * 117.49637 * 359.96924 * 20 2 1 31 31 H 1.08995 * 117.50218 * 144.99549 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.3691 2.3155 0.7810 5 6 1.9729 3.6545 0.8026 6 1 2.4588 3.8494 -0.1535 7 6 0.9000 4.6856 1.0402 8 1 -0.1277 4.3771 1.1633 9 6 1.2301 6.0230 1.1005 10 7 2.4815 6.3987 0.9501 11 14 -0.0998 7.3010 1.3957 12 1 -0.7608 7.0356 2.6988 13 1 0.5106 8.6546 1.4175 14 1 -1.1063 7.2288 0.3063 15 6 3.0091 3.7286 1.9258 16 9 4.0053 2.7713 1.7052 17 9 3.5846 5.0037 1.9460 18 9 2.3856 3.4784 3.1529 19 6 2.2369 -1.1209 0.7647 20 6 2.2365 -1.1207 -0.7654 21 1 -0.3633 0.0791 -1.0247 22 1 -0.3634 -0.9269 0.4437 23 1 -0.3634 0.8478 0.5807 24 1 2.2765 1.7417 -1.0248 25 1 3.1822 1.3088 0.4452 26 1 0.4249 2.3506 0.4269 27 1 2.7138 7.3394 0.9928 28 1 3.1721 -0.8749 1.2677 29 1 1.6120 -1.8588 1.2676 30 1 1.6113 -1.8583 -1.2685 31 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896698615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:41 Heat of formation + Delta-G solvation = -131.118765 kcal Electronic energy + Delta-G solvation = -18023.484826 eV Core-core repulsion = 14697.625386 eV Total energy + Delta-G solvation = -3325.859440 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.34034 -47.98371 -47.64350 -39.43211 -36.79146 -34.40585 -30.53074 -28.94969 -26.52307 -25.97073 -23.24564 -22.67978 -20.07889 -19.07626 -18.77126 -18.56534 -17.41867 -16.80965 -16.44341 -15.85750 -15.25339 -14.98501 -14.77697 -14.51883 -14.41989 -14.32457 -14.22773 -13.91559 -13.75954 -13.26020 -12.90853 -12.82338 -12.62902 -12.62065 -12.22813 -12.15070 -11.70407 -11.40302 -10.98806 -10.64587 -10.51750 -9.29561 -8.18177 -6.45307 1.44159 1.47254 1.54856 2.36155 2.56304 2.87105 2.97080 3.29101 3.82342 3.88505 3.95897 4.01403 4.15528 4.25148 4.43231 4.66389 4.71573 4.82157 4.91390 5.01354 5.08155 5.10311 5.23802 5.32611 5.50826 5.56018 5.70706 6.12143 6.54685 6.72926 7.25042 8.74515 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.031437 B = 0.008664 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.462227 B = 3231.152710 C = 3756.071010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C 0.086 3.914 4 N -0.676 5.676 5 C 0.191 3.809 6 H 0.017 0.983 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.013 3.987 10 N -0.876 5.876 11 Si 0.975 3.025 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.261 1.261 15 C 0.435 3.565 16 F -0.222 7.222 17 F -0.156 7.156 18 F -0.203 7.203 19 C -0.172 4.172 20 C -0.162 4.162 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.355 0.645 27 H 0.266 0.734 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -9.850 -2.638 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.137 4.137 3 C -0.043 4.043 4 N -0.311 5.311 5 C 0.079 3.921 6 H 0.034 0.966 7 C -0.591 4.591 8 H 0.097 0.903 9 C -0.191 4.191 10 N -0.511 5.511 11 Si 0.799 3.201 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.186 1.186 15 C 0.380 3.620 16 F -0.204 7.204 17 F -0.137 7.137 18 F -0.185 7.185 19 C -0.209 4.209 20 C -0.199 4.199 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.178 0.822 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.925 -9.863 -2.034 10.253 hybrid contribution -0.028 1.191 -0.356 1.244 sum -1.954 -8.672 -2.390 9.205 Atomic orbital electron populations 1.21309 0.91091 1.02648 1.02036 1.21446 0.95839 0.89582 1.06809 1.21669 0.96816 0.91185 0.94669 1.60286 1.06356 1.07087 1.57375 1.19865 0.92859 0.89064 0.90295 0.96555 1.21178 0.94147 0.90564 1.53228 0.90267 1.25957 0.98030 1.01043 0.94114 1.70502 1.17745 1.17149 1.45698 0.85342 0.78599 0.77059 0.79114 1.19766 1.20826 1.18582 1.22717 0.81573 0.72808 0.84939 1.92958 1.66150 1.66468 1.94809 1.93366 1.86059 1.37904 1.96415 1.92977 1.83089 1.94243 1.48207 1.23143 1.02155 1.00880 0.94717 1.23102 1.02352 1.00334 0.94115 0.91692 0.91171 0.92118 0.95745 0.91874 0.82228 0.92447 0.90084 0.87584 0.86839 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.85 9.52 71.98 0.69 -2.16 16 2 C -0.14 -3.87 2.57 -52.18 -0.13 -4.01 16 3 C 0.09 3.11 5.57 86.30 0.48 3.59 16 4 N -0.68 -28.24 5.84 -495.43 -2.89 -31.13 16 5 C 0.19 9.54 2.26 44.17 0.10 9.64 16 6 H 0.02 0.91 7.80 -2.38 -0.02 0.89 16 7 C -0.55 -29.14 8.33 25.60 0.21 -28.92 16 8 H 0.08 3.99 7.62 -2.91 -0.02 3.97 16 9 C 0.01 0.69 5.20 84.66 0.44 1.13 16 10 N -0.88 -49.13 9.51 21.45 0.20 -48.93 16 11 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 15 C 0.44 22.70 2.81 71.98 0.20 22.90 16 16 F -0.22 -10.73 15.04 44.97 0.68 -10.05 16 17 F -0.16 -8.84 12.92 44.97 0.58 -8.26 16 18 F -0.20 -10.72 16.95 44.97 0.76 -9.96 16 19 C -0.17 -4.38 9.82 30.60 0.30 -4.08 16 20 C -0.16 -3.68 9.97 30.60 0.31 -3.38 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 23 H 0.06 1.71 5.84 -2.39 -0.01 1.70 16 24 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 25 H 0.06 2.47 5.78 -2.39 -0.01 2.46 16 26 H 0.35 13.82 6.04 -89.69 -0.54 13.27 16 27 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 29 H 0.11 2.33 8.05 -2.39 -0.02 2.31 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -58.18 265.02 4.56 -53.62 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.61 Total: 16.04 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 2.59 Total: -5.28 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.69 Total: -80.06 kcal Atomic # 9 Polarization: -30.30 SS G_CDS: 2.02 Total: -28.28 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -58.18 4.56 -53.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896698615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.500 kcal (2) G-P(sol) polarization free energy of solvation -58.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds