Wall clock time and date at job start Sun Mar 29 2020 21:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 115.56151 * 2 1 4 4 C 1.53006 * 117.49682 * 214.31167 * 2 1 3 5 5 C 1.52999 * 117.49984 * 145.68893 * 2 1 3 6 6 H 1.09002 * 117.49803 * 214.97824 * 5 2 1 7 7 C 1.53005 * 117.51737 * 0.02562 * 5 2 1 8 8 N 1.46896 * 109.46910 * 184.88136 * 7 5 2 9 9 C 1.46899 * 110.99820 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47123 * 325.00397 * 9 8 7 11 11 C 1.50705 * 109.47266 * 205.00223 * 9 8 7 12 12 H 1.07994 * 119.99825 * 359.97438 * 11 9 8 13 13 C 1.37876 * 119.99867 * 180.02562 * 11 9 8 14 14 N 1.31513 * 120.00242 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 119.99722 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47111 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47020 * 119.99693 * 15 13 11 18 18 H 1.48498 * 109.46789 * 239.99425 * 15 13 11 19 19 C 1.53002 * 109.47087 * 85.00535 * 9 8 7 20 20 F 1.39901 * 109.47135 * 59.99660 * 19 9 8 21 21 F 1.39894 * 109.47263 * 179.97438 * 19 9 8 22 22 F 1.39899 * 109.46754 * 299.99869 * 19 9 8 23 23 H 1.09000 * 109.47146 * 274.30840 * 1 2 3 24 24 H 1.08999 * 109.47670 * 34.31422 * 1 2 3 25 25 H 1.09001 * 109.47304 * 154.31393 * 1 2 3 26 26 H 1.09004 * 117.49624 * 145.02427 * 4 2 1 27 27 H 1.08995 * 117.52013 * 359.97438 * 4 2 1 28 28 H 1.08995 * 109.46863 * 304.88457 * 7 5 2 29 29 H 1.09005 * 109.46844 * 64.88440 * 7 5 2 30 30 H 1.00903 * 110.99862 * 56.05175 * 8 7 5 31 31 H 0.96996 * 120.00132 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 3.1716 -0.8751 1.2683 7 6 1.3592 -2.1568 1.4711 8 7 2.2091 -3.0751 2.2406 9 6 1.3991 -4.0855 2.9342 10 1 0.4579 -3.6391 3.2548 11 6 2.1508 -4.5919 4.1383 12 1 3.1321 -4.2025 4.3653 13 6 1.5859 -5.5532 4.9495 14 7 0.3910 -6.0278 4.6727 15 14 2.5173 -6.1803 6.4424 16 1 3.8297 -5.4912 6.5325 17 1 1.7280 -5.9052 7.6698 18 1 2.7349 -7.6434 6.3113 19 6 1.1138 -5.2504 1.9842 20 9 2.3219 -5.8233 1.5727 21 9 0.3429 -6.2129 2.6449 22 9 0.4160 -4.7803 0.8665 23 1 -0.3633 0.0772 1.0248 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3634 -0.9261 -0.4454 26 1 3.1716 -0.8752 -1.2683 27 1 1.6115 -1.8589 -1.2681 28 1 0.6691 -1.6494 2.1451 29 1 0.7939 -2.7206 0.7290 30 1 2.7910 -2.5695 2.8917 31 1 -0.0065 -6.7037 5.2436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896699207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:12 Heat of formation + Delta-G solvation = -121.333783 kcal Electronic energy + Delta-G solvation = -17877.510024 eV Core-core repulsion = 14552.074893 eV Total energy + Delta-G solvation = -3325.435131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.26628 -45.92902 -45.50816 -38.07679 -35.18221 -32.52586 -28.92639 -27.93208 -24.59208 -24.34498 -21.27522 -20.73190 -19.28672 -17.16451 -16.70431 -16.55762 -15.63736 -15.35112 -14.78671 -14.22033 -13.71257 -13.26990 -12.95932 -12.82499 -12.77960 -12.39966 -12.23069 -12.16880 -12.06408 -11.77135 -11.50871 -11.33926 -11.06664 -10.92514 -10.68869 -10.46617 -10.13194 -9.65731 -9.52418 -9.31301 -8.63765 -7.58027 -6.15888 -4.36263 3.21552 3.29656 3.33885 3.96448 4.25269 4.58986 4.81129 4.92342 5.01084 5.13506 5.34292 5.45536 5.76185 5.88943 5.90300 5.94164 6.02969 6.05028 6.10941 6.17027 6.23870 6.41216 6.45480 6.66743 6.91512 7.53694 7.70202 7.91950 8.31298 8.68612 9.30248 10.76511 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.007793 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.631048 B = 3592.006203 C = 3919.172874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 H 0.098 0.902 4 C -0.172 4.172 5 C -0.137 4.137 6 H 0.103 0.897 7 C 0.079 3.921 8 N -0.680 5.680 9 C 0.186 3.814 10 H 0.039 0.961 11 C -0.538 4.538 12 H 0.076 0.924 13 C 0.060 3.940 14 N -0.846 5.846 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.439 3.561 20 F -0.200 7.200 21 F -0.142 7.142 22 F -0.230 7.230 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.346 0.654 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 7.755 -5.658 9.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 H 0.117 0.883 4 C -0.209 4.209 5 C -0.155 4.155 6 H 0.121 0.879 7 C -0.050 4.050 8 N -0.312 5.312 9 C 0.075 3.925 10 H 0.056 0.944 11 C -0.576 4.576 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.481 5.481 15 Si 0.737 3.263 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.206 1.206 19 C 0.383 3.617 20 F -0.182 7.182 21 F -0.123 7.123 22 F -0.213 7.213 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.477 7.176 -6.141 9.457 hybrid contribution 0.026 -0.121 1.201 1.208 sum 0.502 7.055 -4.940 8.627 Atomic orbital electron populations 1.21328 0.93115 1.01698 1.01799 1.22362 0.95349 0.94204 1.05992 0.88346 1.23102 1.02028 1.01075 0.94722 1.22357 1.00784 0.98491 0.93888 0.87889 1.21737 0.93904 0.92271 0.97093 1.60206 1.23605 1.16383 1.31043 1.20071 0.95565 0.87090 0.89739 0.94361 1.20955 1.03973 1.24931 1.07694 0.90616 1.25123 0.95384 0.95712 0.98467 1.70405 1.14684 1.27434 1.35553 0.86228 0.79788 0.78800 0.81438 1.19415 1.20772 1.20638 1.22561 0.73203 0.87262 0.78631 1.92995 1.47158 1.86685 1.91318 1.93396 1.75347 1.65700 1.77869 1.92944 1.80924 1.88852 1.58546 0.92210 0.92682 0.92346 0.89340 0.88825 0.95395 0.90275 0.83414 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.20 37.16 0.34 -1.13 16 2 C -0.16 -2.02 6.41 -90.62 -0.58 -2.60 16 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.17 -2.34 9.82 -26.73 -0.26 -2.60 16 5 C -0.14 -2.05 5.95 -90.61 -0.54 -2.59 16 6 H 0.10 1.49 8.13 -51.93 -0.42 1.07 16 7 C 0.08 1.44 4.75 -3.82 -0.02 1.42 16 8 N -0.68 -14.34 6.22 -107.95 -0.67 -15.02 16 9 C 0.19 4.63 2.26 -68.86 -0.16 4.47 16 10 H 0.04 1.02 7.80 -51.93 -0.40 0.61 16 11 C -0.54 -14.24 8.33 -34.44 -0.29 -14.53 16 12 H 0.08 1.95 7.62 -52.49 -0.40 1.55 16 13 C 0.06 1.62 5.20 -17.82 -0.09 1.52 16 14 N -0.85 -23.57 9.50 55.43 0.53 -23.05 16 15 Si 0.91 20.72 29.54 -169.99 -5.02 15.69 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.44 11.36 2.81 37.16 0.10 11.47 16 20 F -0.20 -5.27 16.94 2.25 0.04 -5.23 16 21 F -0.14 -3.96 12.91 2.25 0.03 -3.93 16 22 F -0.23 -5.53 15.04 2.25 0.03 -5.50 16 23 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.09 1.33 7.94 -51.93 -0.41 0.91 16 28 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 29 H 0.08 1.54 5.76 -51.93 -0.30 1.24 16 30 H 0.35 6.86 8.21 -39.29 -0.32 6.53 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -27.93 267.81 -6.40 -34.32 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.88 Total: 3.23 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.49 Total: -4.56 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.15 Total: -38.06 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.93 -6.40 -34.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.009 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds